Gene detail

Detailed information of XP_065052235.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1659:2653805...2673097
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135681612

ATGAAGTATGGCGACAGGTCGATTGCTGAATGCATTTCTAGTGGTGTTCCAACGTTTCTAAAAGAAAGATCAAGACAGAAATTCTGCTTTTATGTTGCTACGCTGTTGTCAGAAGACGCCAATCTGGCAATTTTGATGTCTGTGCGAAAGTACAATCGGCAGTCTGAAGGGCACTACGAAAAGATATGCCTAACAAATGAGAATGATAAGTATCTTTCAAAATCACATCAAAAAGCCGTGTACAATGACTTGGTGTCATCAAAGGAAAGAAGCTCTCCTCATGGCAACTATAATGGCCCTGCAAGCAAAAGACTCGATTATACTTCAACCCAAAACAAAAACAGCTCAAAGTCGTCCCATTCAAGTAGTGGACAGAAGCAAAGAGACCATGATAGTCCTTCTGCTGATAGACACAGTAGCAGTTCTCGTTATGGAAAAAGTTATGAGAACAATACTAGTGACGATTTTGAATGGACCATGCACACAAGCTCATCAGGCAAGACTTATTATTACAACAAAAGAACAGAGTGGTCCCAGTGGGAAAAGCCAAAGGAATGGATTGAAAGGGAGAACAAGGCGAGAGTTAGAGACAGAGATAGGGAAAGGGAGCGAGAGAGGGAAAGAGACAAGAGAGTTCGGGAAATTAGCAACAGGGAGTCAAGGGAGCAGTCCAAGTATGCCAAGCTCTCCCCTTTCAAGAAAGAATACTCACAGGGTAGAGGAAACAGCCAAGCCCGAAGAAATCATGAATACGCAGAAATTGACCGGCCTAAAATTGTGCAGACTCATGGCTCTAGTACTTCTGCTGTCAGCACAACGTCTAGCAGGTCAAGTGGCTGCCCCACACCGGACACAGTCGGAAGCCCTATTGGCAGTGTTCAAGATATATCACCCCCAAGCACCCCATCGAACAGTGGAATCTCTTCCCTTTCCCCATACGTCAATTCATCAACAGGAAACAATGTGACGTCACCTCACGTTTTTACCAGTTCCCCTGGCGTTTCATCAGTAGCACAAATCAGTTCACAATCTTCGCATCTCTCATCATCAGCCCATGCCAACTTTTATCGTTACTCCTCAAGCGAACCGAAAGTGCAGCCAGTAACACCCAATTCGCAATCATCGGCCAACCCGATTTCAAGCAGCTATGGCTTGTCTCAGACATCTGTTGAAAGTAGTGTCATGACGTCACCTACACCAACCCTCCACCCGTTACAACAAGCGATGCTTCTTCAGCAACAGCAACAACAGCAGCAACAGCAAATAGCGCAATCGATTTATGGAACAGCAAACATTGTGTCAGCGTCATATAGCCAGGCAACCACACCTATTGAGCGGAAGTATCGGCCTGATACGGGCCCCCCTCCGCCTCCTCCACAACAACACGAGCAAGTTGCCACTCCGCCGCCGCCGCCACCACCGAATCAGTATGAGGCTAGCGCAGTGACGCCAGGGGGTCAAACCACTTCGCGATATCGTGATCCAAGATCAGATCCGCGATCGGGTAGTAAGTCTGCTTATGGACCTTCTTACGAATCGTCTTCGGCAGCTAGCGGTTTGGATAACGGTGGTAATTGGGAAAGCTCTCGAAGGAACACAAAAACACCTGAGACACCACTTCCGGACTTACCAGATATGACGCCATATGCCCAGTATTGTTGTAGGAAGGCATACGAGGATGTGGCCGGATGGATGGGCAGCATTCTTGAACGTCAGGCCGCTGTTGCCTGCATCGAAGTAGATTCCTGTCTTGCGTTAGCAGGGGAAAGATCAAAAGCGAATCTTATGATTTCAAATATGGTATCGTTAATTTCTGAATCAAGGCTTCAAGTGTCCAATTCAAGGGTCAGCTGCGTCCGGGAGGTGCTGGATCAAGTCGAGGGTCTTCAGGATTCTAGGATAGAGCGTCAGGATTCGAGGTTGGAGCGACAAGATTTGAAAGCGAAATCCGACCGAACGGATTCCAAGTCGGATCGTATGGGGACGGATCAAAGGACGGAGAAAAGGGATGTGAAAACTGATCGGAGGGAAGTGCAATCTTAG

Transcript

rna-XM_065196163.1

TTTCAATCGAGGCCTCACTAAGACGTAATGAAGATCCCGGATGAAGTATGGCGACAGGTCGATTGCTGAATGCATTTCTAGTGGTGTTCCAACGTTTCTAAAAGAAAGATCAAGACAGAAATTCTGCTTTTATGTTGCTACGCTGTTGTCAGAAGACGCCAATCTGGCAATTTTGATGTCTGTGCGAAAGTACAATCGGCAGTCTGAAGGGCACTACGAAAAGATATGCCTAACAAATGAGAATGATAAGtatctttcaaaatcacaTCAAAAAGCCGTGTACAATGACTTGGTGTCATCAAAGGAAAGAAGCTCTCCTCATGGCAACTATAATGGCCCTGCAAGCAAAAGACTCGATTATACTTCAacccaaaacaaaaacagctCAAAGTCGTCCCATTCAAGTAGTGGACAGAAGCAAAGAGACCATGATAGTCCTTCTGCTGATAGACACAGTAGCAGTTCTCGTTATGGAAAAAGTTATGAGAACAATACTAGTGACGATTTTGAATGGACCATGCACACAAGCTCATCAGGCAAGACTTATTATTACAACAAAAGAACAGAGTGGTCCCAGTGGGAAAAGCCAAAGGAATGGATTGAAAGGGAGAACAAGGCGAGAGTTAGAGACAGAGATAGGGAAAGGGAGCGAGAGAGGGAAAGAGACAAGAGAGTTCGGGAAATTAGCAACAGGGAGTCAAGGGAGCAGTCCAAGTATGCCAAGCTCTCCCCTTTCAAGAAAGAATACTCACAGGGTAGAGGAAACAGCCAAGCCCGAAGAAATCATGAATACGCAGAAATTGACCGGCCTAAAATTGTGCAGACTCATGGCTCTAGTACTTCTGCTGTCAGCACAACGTCTAGCAGGTCAAGTGGCTGCCCCACACCGGACACAGTCGGAAGCCCTATTGGCAGTGTTCAAGATATATCACCCCCAAGCACCCCATCGAACAGTGGAATCTCTTCCCTTTCCCCATACGTCAATTCATCAACAGGAAACAATGTGACGTCACCTCACGTTTTTACCAGTTCCCCTGGCGTTTCATCAGTAGCACAAATCAGTTCACAATCTTCGCATCTCTCATCATCAGCCCATGCCAACTTTTATCGTTACTCCTCAAGCGAACCGAAAGTGCAGCCAGTAACACCCAATTCGCAATCATCGGCCAACCCGATTTCAAGCAGCTATGGCTTGTCTCAGACATCTGTTGAAAGTAGTGTCATGACGTCACCTACACCAACCCTCCACCCGTTACAACAAGCGATGCTTCttcagcaacagcaacaacagcagcaacagcaaATAGCGcaaTCGATTTATGGAACAGCAAACATTGTGTCAGCGTCATATAGCCAGGCAACCACACCTATTGAGCGGAAGTATCGGCCTGATACGGGCCCCCCTCCGCCTCCTCCACAACAACACGAGCAAGTTGCCACTCCGCCGCCGCCGCCACCACCGAATCAGTATGAGGCTAGCGCAGTGACGCCAGGGGGTCAAACCACTTCGCGATATCGTGATCCAAGATCAGATCCGCGATCGGGTAGTAAGTCTGCTTATGGACCTTCTTACGAATCGTCTTCGGCAGCTAGCGGTTTGGATAACGGTGGTAATTGGGAAAGCTCTCGAAGGAACACAAAAACACCTGAGACACCACTTCCGGACTTACCAGATATGACGCCATATGCCCAGTATTGTTGTAGGAAGGCATACGAGGATGTGGCCGGATGGATGGGCAGCATTCTTGAACGTCAGgCCGCTGTTGCCTGCATCGAAGTAGATTCCTGTCTTGCGTTAGCAGGGGAAAGATCAAAAGCGAATCTTATGATTTCAAATATGGTATCGTTAATTTCTGAATCAAGGCTTCAAGTGTCCAATTCAAGGGTCAGCTGCGTCCGGGAGGTGCTGGATCAAGTCGAGGGTCTTCAGGATTCTAGGATAGAGCGTCAGGATTCGAGGTTGGAGCGACAAGATTTGAAAGCGAAATCCGACCGAACGGATTCCAAGTCGGATCGTATGGGGACGGATCAAAGGACGGAGAAAAGGGATGTGAAAACTGATCGGAGGGAAGTGCAATCTTAGGTAATATAGACTGTTAAGCATTGGAAATAAAGTGCCTTTTTACAAATTACGCATTGGCACTTTGATATGGCTGGGTTCTTTTGTGGTCCTTGTTCCTGATATTTCCTTTCGCTGCGTAATCGTGACACTTGGCTGGCAGTCAAGTTGATGGTGTTTCGTTGGCATTGGAccacagaaagtttttttattggcttacattgaaagctttttttattcCTTATTGTTATTAGACGATGTCTTTGTAATTCCGTCACCTGTCCCTTGTATCTGATTGAGCCGGATTTAGGCGATTGCTGTTGTTAAGCAAAACTGGTTATTAGAGCCTTGTAATCATCACAGCCTTTTTTCGGTTCACATTCTGAGAATCCTCTATGATGGCAATAATGGTAATTAGAGgttgtttttattgacaaaaacCTTGCTCTGCATGATAGTACTTAAGTAATCCCGTATATTATCAAAGTAACAATTTCTTAAAAGGGACGTACTCTCCATCGGTTTGGCACATTCCTAAGCCCAGCCCATTGTAAATAGACAGCATACTcgctttttgtcttttcagcTATCCTCAAACATGTACAATCATCTTTCTCTATTGCAAATCGTTTGCCCAAACTTCATGCTACGGGGTTTAGTTTAATTAAGTGACAAATGTTTAGAATAGTCATCGCGtaagtaaaatgtttaaacCCATTTTACGAAcctgtttgtttttgttccaaaacatATCAATTCATTGGCGTCATAAATAGATACAAAACATTATCGTTAACGTATCTCATTCGCTATGCCGATTCTTAAATGTTAGTTACATTTCTTTGTTCAAACTTTCGATCTGTAGTATTTTAAATATGGAAATAGTTGAGCATGGGTGATCGGCTGGTGGCCCGTTTAATTTTGTGtccttctttttcctttttggtaAAATCACCTATTATTACATGAATCGTCTCTAATTGCCTCTGTGCCCATTTCAACTTCCCCTTCTGTATTCCCATATGGAATTATTCTAATTTCTCTAATTTGCTATAAAGCGCATACAATGGTTCACAAGCTAAATAATTAAGTTCTATGTAATGAATAAAGTTGTATCAATGAATGTTAAACTCATAGAAAATGCTTGGTCCCTAGCTTATGCCATTACCAGTGATCATAAATGATATAAGGCTCAATAATGATTATCTGATTTCAAGGCAATCGACAAACACTTAAGGGGCTTGAGccattttcaatcaaaaattgaccaatcagtgagcgtgACTCCACTCCCATGATCATcgattggctaatattgattAACGGATGGCTTAACccacttttctttttatcgattgcctttaatgtTTAACATTGATCGCTGCTTTCAAATCTAAGACTTAAGCACAGCACTTTCAATATTCCTTATTCCACAGTTTCGCCCGCAgctttcataaattttgaaatatctgtTACCTTAGAAAGCGTCAAATGTCTTTTCGAAATATTTGCTGGTCAGTATTATTGATCATTCTAGTTCTCTTAAAGCAGCCTGTTagtcattttatttgctcttCGTTGTTCTTTCTTGCCCTTTATGAGTATAAGAAGCGAGAGAAAGATATTCCTTCTATCCCGACCGGCACTTATTTCTTAACAATTTGTAATCACTTAAACTGCTGAGGATACCCAAGAAAGTCTGTCTGCTATTTGCTATGAATTTCGCCATTAATGATATGAAATTACTTGTTTCTACTCTTACCCCACTGTTCCCTAAATTGTTAGAACTATTCATTGAAAGCCTCAGAAAGATGCGTCCTTTTCTCCTTCCTTAATTTGGACTGTGCTACATTACCATCCTGAAAGTTTTTGTTGCCCTTCCAAGCGCAATTTCATCGCATTTAGCCCGCCCTTCCTTTGTTAACGACATACCCGAACCAGGGCTTCTGTGCTGCTCTCCCTTCTACGCGTCCTTGGTTCTTTCAAATCAAACCTTTCGGTACCTGTTTCCGTGCAACTAGTTAGGCCCCAGTCGTTTACGTCACATTTCAGCTGCACCGAACTCTAAGTCACTTTGTTCCAGTTTAACGATATGTGAACAAATTTGCCATCTGCCGTTGGGTCTACTTTTGGATATGCAGATACGCCTGTTATTGTCATTACGGCCATCAAGATTCCTCTGTATATTATGGTATAGTGTAATTTAGCTTTCTgtgcaattttataaaaggaATAATCTTGAAAAG

Protein

Pfam domain

No Pfam domain signature was detected for XP_065052235.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR038867 all species →	Family	WW domain-containing adapter protein with coiled-coil	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15911 all species →	WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065052235.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.