Gene detail

Detailed information of XP_065052421.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1659:3005053...3016501
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065196349.1

TAGCCGCTTTCAATAATCAGTGCAATAATCTGACAAACAAGAGCTCCGGCAGTGCAGTTGCTCGCACGCGAGCAGGATCTAActcttttttgccaaaaacttttagcaaatacaaattaaaaCTAAGCACAGAAATGTTATGGACAAACAAAGTAACTGGTGGACCCAGACGAGTGAACCATGCTGCAGTTGGTGTCCCGAAAAAGCGACTCGTCTTTACATTTGGAGGTTATTGTACGGGAGAGGAATACAACCAGATATTAAAGATGGATGTCCATATTTTTAATGCGTGTTCTTTGCAATGGTATGCAATGAAAACCCCATCAAGACTAAATAGTAATCAATATTGCTGTGTACCATACATGAGATATGGTCATACTGCATCCCTTGTTGGAAGTAAAGCATATATTTTTGGTGGCAGGAGTGACAGAAATGGTGCATGCAATGTCCTATATTGTTTTGATACTGATATGTTTACTTGGTCTATTCCATCAACTGATGGCATTCCACCTGAAGCCAGAGATGGGCATTCAGCTTGTGTAATtaagacaaaaatatatatatgtggAGGATTCAAGGAAATTgACCAGCGTTTCTCGTCAGATCTCCATATGCTGGAAACAGAAACAATGACTTGGCATAGGCCATTCCAGaCAACCCTGTGTATATGGCGAGATTTCCACACTTCAACTGCCATTGGAAATAAGATCTATGTATTTGGTGGCAGAGgTGACCGCAATGGCCCTATACACACTAATGAAGATATATATGATAACGCAGTTTATGAATTTGACACAGAGAAACTGAAATGGACTGTCCTGTCAGTATCTGGAAATGTACCACATGGCAGAAGGAGCCATTCTGCAATTGCATATAACGACAATATTTACATCTTTGGTGGCTACAATGGACAGCTAAACAAGCATTTCGCTGATCTTTGGAAGTTTAACCCAGTAAACAAACAATGGACAGAAGTAAAGACAAAGGGCGATGGGCCCTGTGCAAGGCGAAGGCATTCGTGGTCTCTTCTTGATAACGAGGTTGTTTTATTTGGTGGCACATGTCCAAGTGCAATTCCAAAACAAGTCGATGTACAGGATGAAGATGAGCTTGCgaatttaaaagatttatcTGACGTTTATATTCTTGATCTCAgtcCAAGTTTAACAACGCTGTGTAAAAAGGCTGTTCTTGCATACAATGTTGATTGTTCTGAGCTGCCGCTTCAAATAagAGGTGAACTTGAGTCGATGAGACACAATAGCTGCGAACAGAAATTCTCAACAGGGATGACACAAGGCTGAGTTTCAGCAACTAAAGAGATCGTCATTTGTGTTGAGCACAAGTGCTTCACCTTAAGTAGATGTAACAAATCTAATCTTCGGTTGCTGTAGCCCACTTCCAACTACCACACCAGTAACTTTagttcatttttgttttttagttgGGAAATCCCTTTTTGGAagtaatattttgtaatgatgtttttgtaaatataataataatttatcGAGCTACTTGTTTAAGATTGtaaaattctaagaaattttattacgttttattagttttaaggttttttaattcaagaGATATAAATATTAGCATAAGACTATCGTAGTTAAATAAATCGTATATTAATGCTTTGTTGTGATGGCGTTTGAGGCGCATTACTTCATTTAGTGTAAGAGGATTTAATACCTGGCTATGCTTCGTTGTTTGTTCTACTACTGACTTGTCATAACTTAAATTGCCGAGTGAAAAGTGCAGCCTAAAATAATTTCAGTATCGTTTATTGATTTAGTTGCGATTGATTCCATGTATAATGTTTACTTATATTGAGGTGGAAGGCCAAGGCAAGACATGGCCAAACTCATCTATATTCACACACATGTTTACATGGTGTCTTTATGCGTTGCCCAGAGGGCCTGGGACCTACTCTACTACACCATGAATCAATCAGTTTCCAAATGCTGCATGAGCTTATCTTCGAATACTACAATTTTAAGTCCGGGCAAAGCAAATccagtattttattttatttaacttCATATTTTCAGTCTTCTCTAAGATTATctagctttcaaaatatatgaatAGAAGATGGTGGTATTCGATTTTTTGGCAAAGGCATTCTGTACGTGTCAGCTATCACCTATTCCCTActgataaaattgtttaaaaaatcttatattCAGATTCAAAAGGTTGAATCAACCTACCCTAATTTATTCCTactcatttctaaactttcttGGTAATACTGAACTTTGTTTAtgtaaaagattttgttttacCAGTGCTTGAGCTAGCATTGTTTTATACGCATACTCGTATTGACGTCATCCTAAAgtgatttttacttttagcATTCATGTACATTctgtaaatcaaaatattattgagGATTTTATGAGTTGTAagga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07646 all species →	Kelch_2	Kelch motif	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011498 all species →	Repeat	Kelch repeat type 2	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25808	KLHDC3; kelch domain-containing protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.