Gene detail

Detailed information of XP_065052585.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_107:1509757...1536371
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135681875

ATGTTAACTAAGTTTGAGACCAAATCAGCTCGTGTGAAAGGGATAGCTTTTCATCCCAAAAGACCATGGGTTCTTGCTGCACTTCACAATGGTGTTATTCAACTTTGGGATTATCGCATGTGTACACTTTTGGAAAGATATGATGAACATGATGGACCTGTCAGAGGCATTGACTTTCATGTTGCTCAACCACTCTTTGTTTCTGGTGGAGATGATTATAAAATTAAAATCTGGAACTACAAACAAAAGAAATGCATTTTTACCCTCTTGGGTCATTTAGACTACATCAGAAGTACATTTTTTCATCATGAATATCCATGGATTCTAAGTTCTTCAGATGACCAAACTATTCGAATTTGGAACTGGCAATCTAGGACTTGCATTTGTGTATTGACTGGACATAACCACTATGTGATGTGTGCACAATTTCATCCTACAGAAGATTTAATTGTTTCAGCCTCACTTGATCAAACTGTGAGAATATGGGACATGTCAGGGCTTAGAAAGAAAACAGTGGCTCCTGGTGGATCTGCACAAGAAGACAGCCACAAAGCACCAGGTCAAATGGACCTATTTGGACAATCAGATGCTGTTGTGAAACATGTTCTTGAGGGTCATGACAGGGGTGTCAACTGGGTGGCATTCCATCCAACGATGCCTTTAATTGTATCAGCTGCTGATGACAGACAAGTCAAATTATGGAGAATGAATGAGGCAAAAGCTTGGGAAGTTGATACCTGTAGAGGTCACTACAACAATGTTTCGTGTGTTTTGTTTCACCCAAGACAAGAACTCATATTAAGTAATTCTGAAGATAAAAGCATTAGAGTCTGGGATATGTCAAAAAGAACTGGTGTCCAGACATTCCGACGAGAAAATGACCGTTTCTGGGTCATGGCAGCACACCCTACCTTGAACCTGTTTGCAGCAGGCCATGACAGTGGGATGATCGTGTACAAATTAGAGAGGGAACGCCCCGCCTATGCGGTGCATGCAAACACCCTTTATTATGTCAAGGAACGCTATCTTAGAATGTATGAATTCGGTACGTCAAAAGATGTACCCATAATGCAATTCAGACGAAGTACTTCAAGACCATTACCAGTCTCCTTGTCGTTCAACCCGGCGGAGAAATGCATCTTGCTCACTTACAATGGAACAAATTCGTCAGGGACAGATTCGGCTGTTTACGAGCTCCACTCTCTCCCTAAAGACGCTAACACCAATGATCCTGAAGTTTCGGAGGGACGACGCGCTGCAGGAATTAACACTGTTTGGGTTGCTCGAAACAGATTTGCTGTATTGGATAAGCAGCAGAATGTTGTCATCAAAAATCTAAAGAATGAAATCACAAAGAAAGTGCAGACTCCTCCATGTGAAATGATTTTCTACGCTGGAACTGGATGTCTTCTTTTGAAAGATCCTGAGCAAGTTACACTTTTTGACGTGCAGCAGAAGAGGAACTTAGCCTCAGTAAAGATCAGCAAAGTTCGATCTGTTGTCTGGTCTTCAGACATGACTTATGTTGCTCTTTTTTCCAAGCACGTTCTTGCCATCTGCAACAGAAAGCTGGAGAGCCTCTGCACCATTCACGAAAGCGTTCGTATAAAAAGCGGTGCCTGGGACGATTGTGGTGTTTTTGTATACACAACAAGCAATCATATAAAATACAGCCTTACAAATGGTGACAACGGAATTATAAGAACTCTGGATCTCCCAATCTACATAACAAGAGTCAAGGGAAGCAGTGTTTATTGTTTGGACCGAGAATGCAAGACTAGAGTGATGAATATTGATCCAACTGAATTCAAGTTTAAACTAGCCTTGGTCAACCACAGATATGACGAGGTTTTGCATATGGTTCGAAACGCTAAACTTGTTGGTCAATCCATTATCTCCTATCTGCAGAAAAAAGGATACCCAGAGGTGGCACTTCATTTTGTAAAAGACGATAGAACAAGATTTGGTTTGGCATTGGAGTGTGGAAATCTAGAGGTTGCAGTCGAAGCTGCCAAGACTTTAGATGACAAAGGATGCTGGGAGAAACTCAGTGACATGGCATTGCAACATGGAAACCACCAGGTTGTTGAAATGTGCTACCAGAGAACAAAGAACTTTGATAGGCTATCCTTTCTGTATCTTATCACCGGCAACAATGAAAAGTTGAGGAAAATGCTGAAAATTTCTGAAATTCGAAAAGATGTGAGCGGGCATTTGCACAATGCTTTGTACATCGGAGATGTGGAAGAGCGAATAAAGGTTTTAAAGCAAGTTGGACAAGGTTCTTTGGCCTACCTCACAGCTGCCAACCACGGACTTGCTGATGAGTGCGCTGAAATAATGTCAACATTCAATCTAGATCCAGAGAAGCTTCCACCTGTAAATCCAAATGCAAAGTTGATGCGACCCCCCGTCCCTATCATGCAAAACGAAGGGAACTGGCCTCTTCTTGCCGTTAGCAAAACACTCTTTGAAACAAAAGGCGGACTGAAAGATTCTGCGACTGCTGGTCTGGATGCTGGAGATATCGGCGAAGCTGGTGGAGAAGGCTGGGGTGATTCAGACCTCATTATCGATGAAGAGGGTGGATTTGGAGAAGACGCGGAGGAGAAGCTTGCTTTGGACGAAGAAGGTGGTGGCTGGGATGTCGGGGATGACGATCTTGAACTGCCTCCTGATATGGATGTCGGTCTACCGAGTGCTGATGGAGAGGGTTATTATGTGCCGCCTACCAAAGGACTCAGTCAGTCTCAGGTCTGGGTGACTAATTCACACTTGCCTGGTGATCATGTTAGCGCAGGCTCCTTTGACAGTGCAGCTAGGCTCCTAAACGGCCAGCTAGGCGTTGTCAACTTTGCGCCTTACAAGCAGCTATTCACGTCAACATACGCACGCTCAAGAACTTCGATTCCCGGATTGCCTTCGACACCAGACCTCTTTGGATATCCACATCGTAACTGGAAGGAGGCTGGTGCCAAGAGTGGCCTCCCCTCAGTCAGCTTGAAACTCAACGACCTCGTTCAGAGACTGCAGTCTGCCTACCAATCGACAACTATGGGTAAATTTCAAGATGCGATCGAAAAGCTCCACGGAGTACTTCTCAGTATCACGTTGTTGGCAGTTGATACAAAACAGGAAATCTCAGAGGCACAAGAGCTCCTTGGCATTTGCCGAGAATACATTGTCGGTCTCCAAATGGAACTTATTCGCAAAGATCTTCCAAAGACCAATGCGGCACAGATGAAACGTGTTTGTGAGCTTGCGGCCTATTTCACACACTGCAATCTACAGCCAATTCATCTCATTCTCACACTCAGGACAGCTTTGAACCTTTCATTCAAGATGAAGAACTTCAAGACAGCTGCGTCCTTTGCTCGCCGTCTTTTAGAACTCGGACCGAAACCAGATGTCGCTCAGCAGACACGAAAAATTCTCCAAGCATGTGACAAGAACCCAGTCGACGCCGTCCAGTTTGATTATGATGAGCTAAATCCATTTTCCGTTTGCAGTATTTCTTACACTCCAGTTTACAGGGGTAAGCCACAAGAGAAATGTCCTTTATGCCAAGCTGTTTATCAGACAGAACACAAAGGCAAAGTTTGCACAGTTTGCAAGGTTGCTGAAATTGGAAGACCGGGACAAGGCTTGAAAATAAGTGTTTCACAATTCAGATAA

Transcript

rna-XM_065196513.1

AGGGTAGGTTCCATTCCTCTGAAGAAGACGAACTGACGTGGCGGCCATGATGTGGTAAAGTTACTTTGGCCTTATCAAAGTGAACATTGTTATTGGTTTGCAAAGACAATATTTTGCGCCATGTTAACTAAGTTTGAGACCAAATCAGCTCGTGTGAAAGGGATAGCTTTTCATCCCAAAAGACCATGGGTTCTTGCTGCACTTCACAATGGTGTTATTCAACTTTGGGATTATCGCATGTGTACACTTTTGGAAAGATATGATGAACATGATGGACCTGTCAGAGGCATTGACTTTCATGTTGCTCAACCACTCTTTGTTTCTGGTGGAGAtgattataaaattaaaatctggaactacaaacaaaagaaatgcatttttacCCTCTTGGGTCATTTAGACTACATCAGAAGTACATTTTTTCATCATGAATATCCATGGATTCTAAGTTCTTCAGATGACCAAACTATTCGAATTTGGAACTGGCAATCTAGGACTTGCATTTGTGTATTGACTGGACATAACCACTATGTGATGTGTGCACAATTTCATCCTACAGAAGATTTAATTGTTTCAGCCTCACTTGATCAAACTGTGAGAATATGGGACATGTCAGGGcttagaaagaaaacagtgGCTCCTGGTGGATCTGCACAAGAAGACAGCCACAAAGCACCAGGTCAAATGGACCTATTTGGACAATCAGATGCTGTTGTGAAACATGTTCTTGAGGGTCATGACAGGGGTGTCAACTGGGTGGCATTCCATCCAACGATGCCTTTAATTGTATCAGCTGCTGATGACAGACAAGTCAAATTATGGAGAATGAATGAGGCAAAAGCTTGGGAAGTTGATACCTGTAGAGGTCACTACAACAATGTTTCGTGTGTTTTGTTTCACCCAAGACAAGAACTCATATTAAGTAATTCTGAAGATAAAAGCATTAGAGTCTGGGATATGTCAAAAAGAACTGGTGTCCAGACATTCCGACGAGAAAATGACCGTTTCTGGGTCATGGCAGCACACCCTACCTTGAACCTGTTTGCAGCAGGCCATGACAGTGGGATGATCGTGTACAAATTAGAGAGGGAACGCCCCGCCTATGCGGTGCATGCAAACACCCTTTATTATGTCAAGgaACGCTATCTTAGAATGTATGAATTCGGTACGTCAAAAGATGTACCCATAATGCAATTCAGACGAAGTACTTCAAGACCATTACCAGTCTCCTTGTCGTTCAACCCGGCGGAGAAATGCATCTTGCTCACTTACAATGGAACAAATTCGTCAGGGACAGATTCGGCTGTTTACGAGCTCCACTCTCTCCCTAAAGACGCTAACACCAATGATCCTGAAGTTTCGGAGGGACGACGCGCTGCAGGAATTAACACTGTTTGGGTTGCTCGAAACAGATTTGCTGTATTGGATAAGCAGCAGAATgttgtcatcaaaaatctaaagaatGAAATCACAAAGAAAGTGCAGACTCCTCCATGTGAAATGATTTTCTACGCTGGAACTGGATgtcttcttttgaaagatcCTGAGCAAGTTACACTTTTTGACGTGCAGCAGAAGAGGAACTTAGCCTCAGTAAAGATCAGCAAAGTTCGATCTGTTGTCTGGTCTTCAGACATGACTTATGTTGCTCTTTTTTCCAAGCACGttCTTGCCATCTGCAACAGAAAGCTGGAGAGCCTCTGCACCATTCACGAAAGCGTTCGTATAAAAAGCGGTGCCTGGGACGATTGTGGTGTTTTTGTATACACAACAAGCAATCATATAAAATACAGCCTTACAAATGGtGACAACGGAATTATAAGAACTCTGGATCTCCCAATCTACATAACAAGAGTCAAGGGAAGCAGTGTTTATTGTTTGGACCGAGAATGCAAGACTAGAGTGATGAATATTGATCCAACTGAATTCAAGTTTAAACTAGCCTTGGTCAACCACAGATATGACGAGgTTTTGCATATGGTTCGAAACGCTAAACTTGTTGGTCAATCCATTATCTCCTATCTGCAGAAAAAAGGATACCCAGAGGTGGCacttcattttgtaaaagacGATAGAACAAGATTTGGTTTGGCATTGGAGTGTGGAAATCTAGAGGTTGCAGTCGAAGCTGCCAAGACTTTAGATGACAAAGGATGCTGGGAGAAACTCAGTGACATGGCATTGCAACATGGAAACCACCAGGTTGTTGAAATGTGCTACCAGAGAACAAAGAACTTTGATAGGCTATCCTTTCTGTATCTTATCACCGGCAACAATGAAAAGTTGAggaaaatgctgaaaatttCTGAAATTCGAAAAGATGTGAGCGGGCATTTGCACAATGCTTTGTACATCGGAGATGTGGAAGAGCGAATAAAGGTTTTAAAGCAAGTTGGACAAGGTTCTTTGGCCTACCTCACAGCTGCCAACCACGGACTTGCTGATGAGTGCGCTGAAATAATGTCAACATTCAATCTAGATCCAGAGAAGCTTCCACCTGTAAATCCAAATGCAAAGTTGATGCGACCCCCCGTCCCTATCATGCAAAACGAAGGGAACTGGCCTCTTCTTGCCGTTAGCAAAACactctttgaaacaaaaggcGGACTGAAAGATTCTGCGACTGCTGGTCTGGATGCTGGAGATATCGGCGAAGCTGGTGGAGAAGGCTGGGGTGATTCAGACCTCATTATCGATGAAGAGGGTGGATTTGGAGAAGACGCGGAGGAGAAGCTTGCTTTGGACGAAGAAGGTGGTGGCTGGGATGTCGGGGATGACGATCTTGAACTGCCTCCTGATATGGATGTCGGTCTACCGAGTGCTGATGGAGAGGGTTATTATGTGCCGCCTACCAAAGGACTCAGTCAGTCTCAGGTCTGGGTGACTAATTCACACTTGCCTGGTGATCATGTTAGCGCAGGCTCCTTTGACAGTGCAGCTAGGCTCCTAAACGGCCAGCTAGGCGTTGTCAACTTTGCGCCTTACAAGCAGCTATTCACGTCAACATACGCACGCTCAAGAACTTCGATTCCCGGATTGCCTTCGACACCAGACCTCTTTGGATATCCACATCGTAACTGGAAGGAGGCTGGTGCCAAGAGTGGCCTCCCCTCAGTCAGCTTGAAACTCAACGACCTCGTTCAGAGACTGCAGTCTGCCTACCAATCGACAACTATGGGTAAATTTCAAGATGCGATCGAAAAGCTCCACGGAGTACTTCTCAGTATCACGTTGTTGGCAGTTGATACAAAACAGGAAATCTCAGAGGCACAAGAGCTCCTTGGCATTTGCCGAGAATACATTGTCGGTCTCCAAATGGAACTTATTCGCAAAGATCTTCCAAAGACCAATGCGGCACAGATGAAACGTGTTTGTGAGCTTGCGGCCTATTTCACACACTGCAATCTACAGCCAATTCATCTCATTCTCACACTCAGGACAGCTTTGAACCTTTCATTCAAGATGAAGAACTTCAAGACAGCTGCGTCCTTTGCTCGCCGTCTTTTAGAACTCGGACCGAAACCAGATGTCGCTCAGCAGACACGAAAAATTCTCCAAGCATGTGACAAGAACCCAGTCGACGCCGTCCAGTTTGATTATGATGAGCTAAATCCATTTTCCGTTTGCAGTATTTCTTACACTCCAGTTTACAGGGGTAAGCCACAAGAGAAATGTCCTTTATGCCAAGCTGTTTATCAGACAGAACACAAAGGCAAAGTTTGCACAGTTTGCAAGGTTGCTGAAATTGGAAGACCGGGACAAGGCTTGAAAATAAGTGTTTCACAATTCAGATAATGTGACAATTGTTTTGAGACATTATTCAGTAACTGGCTTAGAGGGTTTCCAGGAAAAGTGAGTTGCTGCCAGAGAGAACGATAGATACTGTCATCTGATAATTTGTTTTCGAAATCTTATAGAATTATAATTAGATATTgctaataatgaaaatatggACCACTTTTTCTTGTTGTATCGAACTGATTAAATCATTATTTACATGTTTGCAAGCTAGTCAAATTTGGATCTTTCGGTTGATATTATGACATATGTGATATTTCCAACCTTCAGTCTTCAGACTTCATTATCGATAACGTCGTTAATAGAGATCTGGACATAtttaacatagaaaaaaattacactGCTATCGTCAAATATAAAAACGCTCCCCTTGGTAAGATGTGGCTTGCTAGTGGCCTTTAAACATGAACTGTGCTTTgtcaactttaaaaaactcGTTGATTACCATTTCCCTTTCTTTGCATTTATAGCTGTATGAAGACCCGGGACCTAAACCTCCACGTTTTATTATATCAGTTTCGAAATAGTTCTTTTACGGCATGCTAAATATGTATAATTCTGAAGAGTTAATGAGAAACTTTAGATAGTAGCTGGGTATTCTTTGAGCTATTCTCTTATAAATCTCGAAAGATTTTATTATCTTA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF06957 all species →	COPI_C	Coatomer (COPI) alpha subunit C-terminus	Repeat	Interproscan
PF04053 all species →	Coatomer_WDAD	Coatomer WD associated region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050844 all species →	Family	Coatomer complex subunit	Interproscan
IPR010714 all species →	Domain	Coatomer, alpha subunit, C-terminal	Interproscan
IPR016391 all species →	Family	Coatomer subunit alpha	Interproscan
IPR006692 all species →	Domain	Coatomer, WD associated region	Interproscan
IPR047312 all species →	Domain	Coatomer subunit alpha, WD Associated Region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19876 all species →	COATOMER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05236	COPA, RET1; coatomer subunit alpha	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.