Gene detail

Detailed information of XP_065052692.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1662:9054766...9066348
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135681947

ATGAAGTTGCAGCATGGAAAGACCAAGTCTGGCTCTGCATCTCTTGATGGGTCATATGACACTTGCATTAAGAAGGATGGTGACGCCTCTGGTTTGGAGGAAAGTTTTGACGATACAACGCCAACGATAAGTGGAAATTCATCTCAGGATTCGACGTATGCTGAAAGAAGCCCAAAAGAAGACGATATTGAAGGGGTGTTGGATTCGGTGGTGGAAAAATTGCAGGCTGAAGAGGAAAACACATTTATTAGGAAAGATTCTTCTGAAATAAAAGAATCATTGACGGCGCCAATTATATGTTGCAAAAATGAAGAAACCATCAATGAAGTTGTAACTGAAGAGCCATTGATGCCACAAGAAAGCGCTACCGAGGCTTCTATTAGCATTCTGAACTATGATAATCATGATGATGATGATGATAATGATGATAGAAGTGCTGATAGGAGAAGTAACTGCGCATCAGTAAATTTTGACAGCAATAGAACTCGAGAAAATTTGTTAGAATCTTCAGGGGAAAATAATAACAATATTGAAGAAGGTTATGCTCCTCCAAAGAAGGTTGAAGCCGCTGTACAAACAATCCCTGACTGTTCCATTGAAACTGTTGCCAGATCATGCCAAACTACAGAATCAATTTGGAACATGAACTTTTGTGATGGTTGCAAAAGAAATAATGGCAAGGTGACGAAAAACATTTTTGAATTAGTGAAAAAGAACATAAAAGATGCAGTAAGGTTTAAACAGTCAAGCATGCTGGTTGACGAAGAAGCCAAAACAGAGTCGAAATCAAAGAAATACTCAGTAAAATTTACCGCATTTGGATCGTTAGAAAAAGCAGATGGTAACAGCATTTCTGCAGCTGATAGTAGCATGGGAATAAAAATTAGGCGACTTGATTTCACGCCTGTGTGGTCACGTGTTTGTGATGAACTGGATGAGGCTGCCTTCAATGAAAGTTTCATTGACTCTCCAGTGAAACGAAAGAATATGCAATCACAGGGAACCAGGAAACGAAAACGTGGAAAGAATGTTGCTTCCAGCAGGAAGCATTTAAGTAGAAGAGTAAATGAAGAAAAGAGTCAGGGTAGTGTCATAGATTCTCAAGAAGCTGATTTCGATGGCGCTCATTCGCAAGAAACTGATGACGAAACTAGAAAACGTTTTGATGGAGATAAAGAAAGCTCTTCAGGGATCGTCAGTCAAGAGACAGAGGTCAGCCGTGACGTCACAGACGTGGTTAACGAAAAGGCTGAACTCTGCGCAGAGAGTTGCAAGGAGCAATCAAACCCTGTTGAAGGAAAAGAAATAGACGATGTTGTACCACCAACGCCTCCATCTGAGCTTCCGTTGAACGATACAGTTTACTCATCTAACAGATCCGTTCTGTCGAAAGTTTTGCAAAAGGGAGGCAAAACCAGACTTATCACAGACGACAAAAGAGATGCAAAGCTTCCTCTAAGTAAGGTAGAAAACATTTCAAATGAAATATCCTTGTCTTCCGTTATTCTAGATGACGTTTCTGAGAATGGCAGTCAGAATATGTTTATGAGTGGTATAAAGGGAAATCAGTCTATATCGAGAAACAGTCAGGTTGTTTTAGAGAGCCAAGAAGACGGGCCAAAGACGCCTAATGTGAAATGTGGTGTGAGTGAAAAGCCAGGAAGAGACTGCTTGGTGCCAGACGAGGACAATTCAGTAGAAAAGAGACAAACAAGACGCGTAACGTTGAAGCGGAAAGCCAAGGGACCAAAAATTGGAACAGATAATGTAACCAAAAAACAAAAACTCGAGTCGATTTGTGAGAATGTTAACACTGACTCACAAAATGGCAATTTATCGGGTAAAAGCATTGCATCTAAAAAAGTTTCTAGTTTCCAAACGGATTCCCTTTATGACATTGATTCACAAATCCTAATCGGTAGTGAAAACCCCAGTGGATTAGGTCAGAATACAGAAAGTAGCGCAGAAGTCAGTAAAAAGTCCCAAGAGACATTAGTTACAACTGGAGAGCATGGAAGCATTGTTGGACAGCACGATGCTCCATTTTTGGTGACAGAAAGCAGAATAGATATTTCATTTAACGACAGCCCGATTGATATTGTAAATTCTCAGAAAACAAACAATTGTGTCAAAGATAATGATTTTCAGAATTCAGCACAAGGTAACGAAGAGCAAAATGATAGGAACCAGGAGGGAGTACTGAATAACAACGAGTTCACCCAGGATATACCCAGCAGTATCTTGGCAACTAGCAATGATCAAAATACCGCCGATGAACTAGCGGACACTTGTCTAGAGGATGTGCCATTGAAAAAGGAAGAATTTCCACTTGAAGAGGATGAATGTATTAATGACGCTGCCATTCTATTTGACAGTAATGAAGAAGTTGACGAAGGAGTTGGCGGAGGAGTTGGCGAAAGAGTTGATGAAGGAGTTGACGAAAGAGTTGACGAAGGAGTTGACGATGAAGTTGAAGATGCTGCGATGGTCAAAGAAAATGGGAACAATGAAGAAGCTTACGAGCTTTGTGGAGTAAAGCGCGCTGGCAAACAGTCTACTGCAAGGGCAGAGCAATTCAGTTGCCTAGATGACGATGAAAAGGATTTGTTTGCATCTGATGAAGAAGATCTTATCGAGGAGGAAGATGCTGCCCATGAAGAAGCGGGTACTACAATTGAGGGAAGGACAGCTGAACCGAAGAACGATGACCCGGAGAAGAAAAACACATCTGATTTTAAAAGCTTGGTAAGGAGGTTTTCAAAAAAGGGATACGAAGAAAACGAGGCTGAAGAAAGCTCAGAAGAAGAACCTGAATTTATCAAACCTTCTCCTGAGCGTTATCTCGAAAACAATACTTCCATTAAGATGAAACGCCATTATGCAAGTGAGGCTGGCTCTGAGCTAGTCTTAGTTAAAAACACAGAGGAGATCACAGATAATTGTGAGTATGAAAGTCCCCCGTCGCCAACACCACCCCCTAGGATAAAGAAGAAAAAGACCTCTCCGCAGTTCCAAGAGACGATGGAAATGCTGAAGAAACTTGCGGCCAAAAATGATAGGCCTATGCTCATAGAAAAAGTTGACGATGCTACAGTTCCCCACAAAGTAAAGCCTAAAGCAGCAGGAGATGTTGAATCACTCTCTGTTATGACTGGAGTGAACATCAATACTCGAAAAACTGAGAAAGCAGAAGGCTGCCACGCAAAGAACTTCCGAAAAACCACAGAAAACGCCCTTTTGCCTTTTACAGGTGCCAGCGAGCGGTTCCAGCCAGGGAAAGGGCAAGTGGATAACCACGAATTCATGCGGCAAAATACACCAAATCGCGGTGATGCACATGCTGTCAATAAGATGACTGACAACAAGTTAACTGTTGTCCCACAATTGACAGTCAAGAGAGAAATCGTCACCACACCAAAGTTAAAGTCTGAAAGTCAATTGAGGGATAGAGGCAATCTGAACACTGTTGGTGGTTCATTTGAAAGTCCAGCAAGGACACACAAGACACCAAGCGTGCTTGTTCCGTCAAGACTGAACAGAAGGCAAATGGTTTGTTGCAAGGCTCTAGCAGATAAAATAGGCTGCAAGTTTTCAACATCTTTCATCGACGGCGTTTCGCATTTAATCATGGGAACTGACGAAAACTTTGCCATCGATCGGTTTGCTTACACTTACAAATACTTGATGGCCTTAATAACTGGTTCATGGATCGTGAGTTTTAAATGGGTGACATCCTCTTTGAATGCTCAAAAAGTAGTTGATGAGGCACAATATGAAGTGAAAGGTGACATTTCCTCAAATCATGAAATGGTACCCAAGCTTGCGAGGAATTCAAAGCAAAGGAAGGATTCGCCGCTATTTACTGATCTTACATTGTCACTTGTTGGGGATTTCCAAACATGCAACATGACTAGAGAGCAACTCGCCCAGCTACTGGAAAAAGGTGGAGCAGTAGTCATGTTTGAATTACCCAAGTCCATACCATCGAAGAACTTTCTGCTAATCACGGATTCTGAAGACATTGAAGGCTTTAAAAGTCAATTTATCGAAGCAAATATTCAGCCAGTTCATTACCAATGGATAACGGAGTCTATTATCAACTATAAGGTACAAAATCCCGCGGAATTTCTCATAAATTTATGA

Transcript

rna-XM_065196620.1

ATGAAGTTGCAGCATGGAAAGACCAAGTCTGGCTCTGCATCTCTTGATGGGTCATATGACACTTGCATTAAGAAGGATGGTGACGCCTCTGGTTTGGAGGAAAGTTTTGACGATACAACGCCAACGATAAGTGGAAATTCATCTCAGGATTCGACGTATGCTGAAAGAAGCCCAAAAGAAGACGATATTGAAGGGGTGTTGGATTCGGTGGTGGAAAAATTGCAGGCTGAAGAGGAAAACACATTTATTAGGAAAGATTcttctgaaataaaagaatCATTGACGGCGCCAATTAtatgttgcaaaaatgaagaaaccaTCAATGAAGTTGTAACTGAAGAGCCATTGATGCCACAAGAAAGCGCTACCGAGGCTTCTATTAGCATTCTGAACTATGATaatcatgatgatgatgatgataatgatgatagAAGTGCTGATAGGAGAAGTAACTGCGCATCAGTAAATTTTGACAGCAATAGAACTCGAGAAAATTTGTTAGAATCTTCAGGggaaaataataacaatattgAAGAAGGTTATGCTCCTCCAAAGAAGGTTGAAGCCGCTGTACAAACAATCCCTGACTGTTCCATTGAAACTGTTGCCAGATCATGCCAAACTACAGAATCAATTTGGAACATGAACTTTTGTGATGgttgcaaaagaaataatgGCAAGGTGacgaaaaacatttttgaattagTGAAAAAGAACATAAAAGATGCAGTAAGGTTTAAACAGTCAAGCATGCTGGTTGACGAAGAAGCCAAAACAGAGTcgaaatcaaagaaatactCAGTAAAATTTACCGCATTTGGATCGTTAGAAAAAGCAGATGGTAACAGCATTTCTGCAGCTGATAGTAGCATGGGAATAAAAATTAGGCGACTTGATTTCACGCCTGTGTGGTCACGTGTTTGTGATGAACTGGATGAGGCTGCCTTCAATGAAAGTTTCATTGACTCTCCAGTGAAACGAAAGAATATGCAATCACAGGGAACCAGGAAACGAAAACGTGGAAAGAATGTTGCTTCCAGCAGGAAGCATTTAAGTAGAAGagtaaatgaagaaaagagtCAGGGTAGTGTCATAGATTCTCAAGAAGCTGATTTCGATGGCGCTCATTCGCAAGAAACTGATGACGAAACTAGAAAACGTTTTGATGGAGATAAAGAAAGCTCTTCAGGGATCGTCAGTCAAGAGACAGAGGTCAGCCGTGACGTCACAGACGTGGTTAACGAAAAGGCTGAACTCTGCGCAGAGAGTTGCAAGGAGCAATCAAACcctgttgaaggaaaagaaatagaCGATGTTGTACCACCAACGCCTCCATCTGAGCTTCCGTTGAACGATACAGTTTACTCATCTAACAGATCCGTTCTGtcgaaagttttgcaaaaggGAGGCAAAACCAGACTTATCACAGACGACAAAAGAGATGCAAAGCTTCCTCTAAGTAAggtagaaaacatttcaaatgaaatatccTTGTCTTCCGTTATTCTAGATGACGTTTCTGAGAATGGCAGTCAGAATATGTTTATGAGTGGTATAAAGGGAAATCAGTCTATATCGAGAAACAGTCAGGTTGTTTTAGAGAGCCAAGAAGACGGGCCAAAGACGCCTAATGTGAAATGTGGTGTGAGTGAAAAGCCAGGAAGAGACTGCTTGGTGCCAGACGAGGACAATTCAGTAGAAAAGAGACAAACAAGACGCGTAACGTTGAAGCGGAAAGCCAAGGGACCAAAAATTGGAACAGATAATGtaaccaaaaaacaaaaactcgAGTCGATTTGTGAGAATGTTAACACTGACTCACAAAATGGCAATTTATCGGGTAAAAGCATTGCatctaaaaaagtttctagTTTCCAAACGGATTCCCTTTATGACATTGATTCACAAATCCTAATCGGTAGTGAAAACCCCAGTGGATTAGGTCAGAATACAGAAAGTAGCGCAGAAGTCAGTAAAAAGTCCCAAGAGACATTAGTTACAACTGGAGAGCATGGAAGCATTGTTGGACAGCACGATGCTCCATTTTTGGTGACAGAAAGCAgaatagatatttcatttaaCGACAGCCCGATTGATATTGTAAATTCtcagaaaacaaacaattgtGTCAAAGATAatgattttcagaattcagcACAAGGTAACGAAGAGCAAAATGATAGGAACCAGGAGGGAGTACTGAATAACAACGAGTTCACCCAGGATATACCCAGCAGTATCTTGGCAACTAGCAATGATCAAAATACCGCCGATGAACTAGCGGACACTTGTCTAGAGGATGTGCCATTGAAAAAGGAAGAATTTCCACTTGAAGAGGATGAATGTATTAATGACGCTGCCATTCTATTTGACAGTAATGAAGAAGTTGACGAAGGAGTTGGCGGAGGAGTTGGCGAAAGAGTTGATGAAGGAGTTGACGAAAGAGTTGACGAAGGAGTTGACGATGAAGTTGAAGATGCTGCGATGGTCAAAGAAAATGGGAACAATGAAGAAGCTTACGAGCTTTGTGGAGTAAAGCGCGCTGGCAAACAGTCTACTGCAAGGGCAGAGCAATTCAGTTGCCTAGATGACGATGAAAAGGATTTGTTTGCATCTGATGAAGAAGATCTTATCGAGGAGGAAGATGCTGCCCATGAAGAAGCGGGTACTACAATTGAGGGAAGGACAGCTGAACCGAAGAACGATGACCCGGAGAAGAAAAACACATCTGATTTTAAAAGCTTGGTAAGgaggttttcaaaaaagggaTACGAAGAAAACGAGGCTGAAGAAAGCTCAGAAGAAGAACCTGAATTTATCAAACCTTCTCCTGAGCGTTATCTCGAAAACAATACTTCCATTAAGATGAAACGCCATTATGCAAGTGAGGCTGGCTCTGAGCTAGTCTTAGTTAAAAACACAGAGGAGATCACAGATAATTGTGAGTATGAAAGTCCCCCGTCGCCAACACCACCCCCTaggataaagaagaaaaagacctCTCCGCAGTTCCAAGAGACGATGGAAATGCTGAAGAAACTTGCGGCCAAAAATGATAGGCCTATGCTCATAGAAAAAGTTGACGATGCTACAGTTCCCCACAAAGTAAAGCCTAAAGCAGCAGGAGATGTTGAATCACTCTCTGTTATGACTGGAGTGAACATCAATACTCGAAAAACTGAGAAAGCAGAAGGCTGCCACGCAAAGAACTTCCGAAAAACCacagaaaacgcccttttgCCTTTTACAGGTGCCAGCGAGCGGTTCCAGCCAGGGAAAGGGCAAGTGGATAACCACGAATTCATGCGGCAAAATACACCAAATCGCGGTGATGCACATGCTGTCAATAAGATGACTGACAACAAGTTAACTGTTGTCCCACAATTGACAGTCAAGAGAGAAATCGTCACCACACCAAAGTTAAAGTCTGAAAGTCAATTGAGGGATAGAGGCAATCTGAACACTGTTGGTGGTTCATTTGAAAGTCCAGCAAGGACACACAAGACACCAAGCGTGCTTGTTCCGTCAAGACTGAACAGAAGGCAAATGGTTTGTTGCAAGGCTCTAGCAGATAAAATAGGCTGCAAGTTTTCAACATCTTTCATCGACGGCGTTTCGCATTTAATCATGGGAACTGACGAAAACTTTGCCATCGATCGGTTTGCTTACACTTACAAATACTTGATGGCCTTAATAACTGGTTCATGGATCGTGAGTTTTAAATGGGTGACATCCTCTTTGAATGCTCAAAAAGTAGTTGATGAGgcaCAATATGAAGTGAAAGGTGACATTTCCTCAAATCATGAAATGGTACCCAAGCTTGCGAGGAATTCAAAGCAAAGGAAGGATTCGCCGCTATTTACTGATCTTACATTGTCACTTGTTGGGGATTTCCAAACATGCAACATGACTAGAGAGCAACTCGCCCAGCTACTGGAAAAAGGTGGAGCAGTAGTCATGTTTGAATTACCCAAGTCCATACCATCGAAGAACTTTCTGCTAATCACGGATTCTGAAGACATTGAAGGCTTTAAAAgtCAATTTATCGAAGCAAATATTCAGCCAGTTCATTACCAATGGATAACGGAGTCTATTATCAACTATAAGGTACAAAATCCCGCGGAATTTCTCATAAATTTATGAAGACTATGCATTTCTCAACCTGCagtttattgtaaatattagcatacaaatttttcatttttgtaaattcataCTGATAAGGTTTTGTTTCGTTGCTTAAGTCTACGCATACTGCTTTTAGTAATGTTTTAACAAATAATAGCGCGGCTAATTTtaatatcaaatcaaataatgaCATCcctacaaaata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR031099 all species →	Family	BRCA1-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13763 all species →	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0035066 all species →	Biological Process	obsolete positive regulation of histone acetylation	Interproscan
GO:0035067 all species →	Biological Process	obsolete negative regulation of histone acetylation	Interproscan
GO:0045717 all species →	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065052692.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.