Gene detail

Detailed information of XP_065052944.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1662:6080394...6101450
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135682133

ATGGCGGATTGGGCAGACTACTTCTCACGATCGCGACCACCATCGAATCTTGAGGAGGCCAAAAGAGCAATAGAAGACTTTGCATCGAAACATAGACAGCTGGGCAGGAATATTGTGCTGGTGACGAGTGGAGGAACAACAGTTCCATTGGAAAGTAACACAGTTCGCTTTGTTGATAATTTCAGTCAAGGAACAAGAGGTGCTTCCTCTGCCGAATACTTCTTACAATATGGCTATGCAGTCATATTTCTCCATAGACAAAGGTCACTTGAACCATTTTGCAGACATTTTGAAGGCCACAATGCTTTGGATATGCTTGATGTGCAATTTGATCAAAACGGTGCTTGTTCCTTATCAGTTGATGAATCAAGAGCTCCTTGGCTTCAGGATATTCTAAGAAAGTACAAGGAGGTACAGGGGTCATGTCTGTTGCTGCAAATTGGTTTTCTAACACTGTCAGATTATCTATTTTTATTGCAAGCTTCTGCCGAGGCATTGTCACCCATGGGCTCACATGCAATGTTTTATCTTGCTGCAGCAGTTTCTGATTTTTACATTCCAGACAGTGAAGTGGCTGAACACAAAATTCAATCAGTAGATGGTGTGCTGCAATTAACAATGTACCCAACACCAAAGATGCTATCCCCATTGGTTAAGCAGTGGGCGAAGGCTGCTTTTGTTGTGTCTTTCAAGCTGGAAACGGATGTGAACATTTTATCAAGAAAGGCAAGAGAAGCTCTGGAAAAATATAACCATCAGGTTGTGATAGCAAATATTTTGCAAACGAGGCGGAAGACTGTCGTAATAATCACACCATATGATGAGTATGCCATTTGGATGGCTGAAAATGAGCTTGAGACTGGCAAGGAAATAGAAGAGAAAATCGTTGAAGAGCTATCGAGGAGACACTTGCAGTTTATAGCTGACAATCCAGTGGCTGCTTCAAACAGCGATGATCCAAGCACGCCGAATCATCAAGTGCCAGTAAACACTCTGCCAGCATCTTTACAATTTCAGAATCAAGGATCTGATAATGCGGCTGAAAGCCAGAATATCCAAGCAGGAGGGAACAACCAAGTAATGAACAACGGTGTTGTTGGAAGCCAGATCGTGAGTCAGTCAAAGAGCCTTTATTTTCAAATGAAGTTTAACCCCGATGGAACAACAGTGACTCAGGCGATTCCGAACCCACCACATAATCTTCGTCGATCCTTCTCAAGCAAAGACGATCACGGACTGTCCGACGAAATGCTGGATTTTATCAAATACTTCAAAACCAAAAGGATGTCATTAGGGTATACCCAGGAAGATATTGGAAGGGAACTTTCAGAGATGAATGGTCCAACATACAGCCAATCCTTTATCTCCAGGTTTGAAGGCAAGCAGCTAGGGATGAAAGCTGCGGAACGAATGAGGCCTATTTTGGAACTATTTCTGCAACAGAAGGAGGCTGAAGGATCTAAAAATATGAAATTCGGAAAGAAAAGACGCAGGCGAACTTGCTTCAGTCAAGAGGCGCAGGAAATTTTGAACAACCACTTTAGCAAGAATCCAAAACCATCTCCAGAGGAAATTCAGCTGATAGCTAACGAACTGGGATTTGAACTGAACACGGTCAAAGTTTGGTTTTGCAACCGTAAACAAAGCCTTAAAAGGCAGGGCCAGCCAGTACCTGATAATTCACTTCGAGGCGAATTAGAAGCGAGGCGAAAGCAAAGCCAAACAAACGAGGCTTCTGAAAACCAATTTCAAAATACGTTGAGTGTTCCTTCTAGCCAAGTAAAACATATGTTATCACCTTCACCACCATCTGGTGGTGTCACGAATTTGCCATTTATATTGAGCCAAGACGGCATGGCAATTGTATCTTCGCCAAACTCCTTACAAGGGGCGCACATCATTCCCCAGTTTATAGCTTCAAGTACTTCGCAGCAGTTAGTTCTTTCGCAGGTTCCCTTTGTACAGACAGTTTCTGCTATGAACCAAGCGATATCCGGTGTTGTCACAGTCCCTGCTGTCCAGCCAGTACAGGTACTGGGAACGAGACAGGTTTTGTATCACCAGGGAACACCCGTTAGCGCCGTGGCGATAAACGAAGATCCTCATCGTGTAGCGCCTTCAACCGCCACCTCTCCACGCAAGACGGATGCACTTCTAGCCGGACAGTTTTCAAATACGGACACACGACCGCCGAGTGAACTGACTGTTGTTAGTCCATCGATGATATCACGATCAATGTCAAACGAAATAGGAAGCACAGTAACGGACCAACCAATCAGCGATGAATTACATCCTCAGTCACGTGACCAAATTCGCTCGCCTCCACCCGTCGTTATTATGGGTGACAGTATGGACGAATCAAGAGACTTGACGCAGATTAAATCTGCAGAGACGGACGTTAGCATTACAAAGAAACTAAGGACCTTGTCGCATAGCTGA

Transcript

rna-XM_065196872.1

TATTCTTGTTTGATGCCCTGTGGCCATGTGACCTGTAGCTGTGTGgtccaaaaaaaatttgctgtagTGCCTTGTCATACCAATGCACTAGACGTAAGTGTGGTTTGTGACAGGGAGATAAGGTACATGTATATTATTTGCCTTCAAGAGAAAGGAGGACCAGTTTAGCTACCTGCAAAGCAGTTGAGATGAAATCATAAACAATAGCACAACACGTGAACTCTTGACAAGTAAACAAGTTTGATGAAACATGGAAACGGAAAGAAATAATGAGAACGACTGTTTGAGCCCAAAGGAACAGAAGGTTGCTGTTAACTTTATTTGGAGTCAACCAGATTTTTCCCCAGAAGCAACAGCTGTCGACCTTATTGTAGGCCACGCTGTTGGTGCtaacaatgatatttttgaaatgtacATGGAGGGGACAGAATTGAAGGAAAATACGCCAATTTCAGAATATAGACTTGACAAAATGACAGATTCTTCAAACTGTACCtcatttgatatcaaaattaatttaccAAAGAATTCATACCAATTTCTGTTTCGAATTGAGGATGTCAACAACTTAATTTATTTGGCAGTCAGTGAAAGttacaaacaaatacaacttGTCAGTGGGAGGACAGTAAATTACTTGGAAGTAGATGATAACAATTGCAGCACAAAGGAAGACAAAGATGAATTTATGGATGTCAATGAATCAGCCCCATTGGTTGAAGGCGAGAGAagaaagaatggaaaaagggaaaaaggaACAAGAATCGGGTGAAAATGGCGGATTGGGCAGACTACTTCTCACGATCGCGACCACCATCGAATCTTGAGGAGGCCAAAAGAGCAATAGAAGACTTTGCATCGAAACATAGACAGCTGGGCAGGAATATTGTGCTGGTGACGAGTGGAGGAACAACAGTTCCATTGGAAAGTAACACAGTTCGCTTTGTTGATAATTTCAGTCAAGGAACAAGAGGTGCTTCCTCTGCCGAATACTTCTTACAATATGGCTATGCAGTCATATTTCTCCATAGACAAAGGTCACTTGAACCATTTTGCAGACATTTTGAAGGCCACAATGCTTTGGATATGCTTGATGTGCAATTTGATCAAAACGGTGCTTGTTCCTTATCAGttGATGAATCAAGAGCTCCTTGGCTTCAGGATATTCTAAGAAAGTACAAGGAggtACAGGGGTCATGTCTGTTGCTGCAAATTGGTTTTCTAACACTGTCAgattatctatttttattgcaagCTTCTGCCGAGGCATTGTCACCCATGGGCTCACATGCAATGTTTTATCTTGCTGCAGCAGTTTCTGATTTTTACATTCCAGACAGTGAAGTGGCTGAACACAAAATTCAATCAGTAGATGGTGTGCTGCAATTAACAATGTACCCAACACCAAAGATGCTATCCCCATTGGTTAAGCAGTGGGCGAAGGCTGCTTTTGTTGTGTCTTTCAAGCTGGAAACGGATGTGAACATTTTATCAAGAAAGGCAAGAGAAGCTCTGGAAAAATATAACCATCAGGTTGTGatagcaaatattttgcaaacgAGGCGGAAGACTGTCGTAATAATCACACCATATGATGAGTATGCCATTTGGATGGCTGAAAATGAGCTTGAGACTGGCAAGGAAATAGAAGAGAAAATCGTTGAAGAGCTATCGAGGAGACACTTGCAGTTTATAGCTGACAATCCAGTGGCTGCTTCAAACAGCGATGATCCAAGCACGCCGAATCATCAAGTGCCAGTAAACACTCTGCCAGCATCTTTACAATTTCAGAATCAAGGATCTGATAATGCGGCTGAAAGCCAGAATATCCAAGCAGGAGGGAACAACCAAGTAATGAACAACGGTGTTGTTGGAAGCCAGATCGTGAGTCAGTCAAAGagcctttattttcaaatgaagtttAACCCCGATGGAACAACAGTGACTCAGGCGATTCCGAACCCACCACATAATCTTCGTCGATCCTTCTCAAGCAAAGACGATCACGGACTGTCCGACGAAATGCTGGATTTTATCAAATACTTCAAAACCAAAAGGATGTCATTAGGGTATACCCAGGAAGATATTGGAAGGGAACTTTCAGAGATGAATGGTCCAACATACAGCCAATCCTTTATCTCCAGGTTTGAAGGCAAGCAGCTAGGGATGAAAGCTGCGGAACGAATGAGGCCTATTTTGGAACTATTTCTGCAACAGAAGGAGGCTGAAGGatctaaaaatatgaaattcgGAAAGAAAAGACGCAGGCGAACTTGCTTCAGTCAAGAGGCGcaggaaattttgaacaaccaCTTTAGCAAGAATCCAAAACCATCTCCAGAGGAAATTCAGCTGATAGCTAACGAACTGGGATTTGAACTGAACACGGTCAAAGTTTGGTTTTGCAACCGTAAACAAAGCCTTAAAAGGCAGGGCCAGCCAGTACCTGATAATTCACTTCGAGGCGAATTAGAAGCGAGGCGAAAGCAAAGCCAAACAAACGAGGCTTCTgaaaaccaatttcaaaatacgTTGAGTGTTCCTTCTAGCCAAGTAAAACATATGTTATCACCTTCACCACCATCTGGTGGTGTCACGAATTTGCCATTTATATTGAGCCAAGACGGCATGGCAATTGTATCTTCGCCAAACTCCTTACAAGGGGCGCACATCATTCCCCAGTTTATAGCTTCAAGTACTTCGCAGCAGTTAGTTCTTTCGCAGGTTCCCTTTGTACAGACAGTTTCTGCTATGAACCAAGCGATATCCGGTGTTGTCACAGTCCCTGCTGTCCAGCCAGTACAGGTACTGGGAACGAGACAGGTTTTGTATCACCAGGGAACACCCGTTAGCGCCGTGGCGATAAACGAAGATCCTCATCGTGTAGCGCCTTCAACCGCCACCTCTCCACGCAAGACGGATGCACTTCTAGCCGGACAGTTTTCAAATACGGACACACGACCGCCGAGTGAACTGACTGTTGTTAGTCCATCGATGATATCACGATCAATGTCAAACGAAATAGGAAGCACAGTAACGGACCAACCAATCAGCGATGAATTACATCCTCAGTCACGTGACCAAATTCGCTCGCCTCCACCCGTCGTTATTATGGGTGACAGTATGGACGAATCAAGAGACTTGACGCAGATTAAATCTGCAGAGACGGACGTTAGCATTACAAAGAAACTAAGGACCTTGTCGCATAGCTGAAAGCTTGTTGTATTTTGtccaattttgtttcatttcacccacatttttgttcttctttttgcttttgtacAGTCGCAATAATTTCCCCAAAGGGTAGCTTTTCACTTCCTTTGTCTGATTTTAGTTTCCCTTGCTATGACATattatgttaatttatgtCATATGTATGTCCATATATGGCGCCTTTTACATCTCGATGTCTTCTCACACTGCAAAACCTGTTGTTTGCAGTCAACGGTTTACTGACGGGACATAGTGCCTAAAATATTCCATTATATTGGAGTTCTAGACGTTATATGCCTGCAATAGATTTTATCTACTATTTCCTAAAGGCATCACTTACTTCGTTTGATTTTTCACATACCATTTAGTATCCCTCGTAAATTTCAACCCTAATCTCATtcattgatcaattgatctcATTGATCAACTCTCATCTTTAGCAGAACTTAAGGGTTCCATTCATGTTTATGAAATTAGTTAGCCCTTCCTAAACAtcttgaatgaaattttcattccatactaaaacttttctcaatttttcaatttattttttcttcatctgtCTTTTTTTTACATGTTCACTTTATGGTCGTTTAGCTGTAAACCTTGtaaagttatatttttagataatttttcCTCGTCGTTTTTCTCTAAATGTGTTTTGAACTGTTTTTGTAGTTTCAGATTATACAATATTATGGTTTTAAAAATCCGACTTTTATCCTTATCAGCTTCCATTTCTTACGTTCAACTTTTTGTATGTACCggttttgaattattttgctttttaaatcgATGGGAAATTGAGAAGAtactaaaagcaaaatatttttccattcttAAAGACCTTGTCCagtcattttcattgaaaactgaATGGTTGGTTTCGTTAAAGTGCTGTCAGACTTTGTGTCCAGGACTCTTCGCCTTGCAAAAACTATCAACATTCAAGCAAGCAGAGGGCCAAGCCATTTGTCTATTTTAAAGCCATATCCCATAAGAGATGGAGAACTTCTTCCCTTGGGAATGGTTTCTACGCTGTTTTTACATTCAAGCCGGAGTTTGTTTTGTGCTCTCCAATCCAAGTGATGCACAGGCGTAAAGGCCTATTACTTTCGCAATACTATCGCTTCAGCAgggcaaaaatgaaaacgatgAAGATTTGCTAGTATAATAAAGAGAGAAAAATAGAGTTGAgaacaaaatgtaaagaagGTTGAATCCAAGGAAAAGAGTAAGTAAACGTGCGTTAAGCtctgtttttttgcaaaatttcgcTCAATTTTGTATCTACATTTTTTACACGTGCTCTAAGCCTAAATTATTATAAGCAATACCTAAATTGTATTTCGTTTACTGTGAATTACGTAGGTCATATTGATCACCTAAACAGAATCTCGTTGAAATAGATAACCTTTTGAGAATGTTTTCTCAGTGTTTGTTTGGCaccaaacaaaaagcaaaCCAGAAGACAGAGAGATGTCAAGGCTCCTTGACTGGACTCTCATTTGCCAAACATGAAGGAGCCTGAGCTACTTATTGTTTCACAAATTGCTCAAAATCTGTAGTTTTGCAGTCTgtttattcatatttctgGGTCCCTTGAAAAGTGCGGTTAGGCCATTAGGTGAATAATTTGCTCTATTATATGCTTTGTTAAGATGTTAAAAGTTATTAAACATGGGCAGAGTGTGGAGGGCGGAGTCTTTTTCTCCAAAACGAGAAATACCATGTACTTTACTCCCTAGTGGATCCCATTAAAGCCTGAATGGCTAAGAGGCTTCTTGACTGCCTCCATACCacagattttttctttcttctgcCTAAACATGGCCTAAATAGATCCCTTTTCCCCTTCCTTCTTTATCgtaaagaatttgaattattaatCAAAGATAGGATCGTATTCTGACCTGCAGGGTATAGGAACAGCCTACTTTGGGTGTTTACGGGTAATAACCTGGAATCAGGTCGAACGGAGGCGGACAGCCTGAAAATCCACCGCATCGGTTGTTTGCGATATCCTTTAATGCCACCGACGACGTGAACGTGGTTGAGCTTAAGCGAAAGTGGTTTGGCCTAgattaaaatatatctttcaaGATAAGATATGCCATTTTTATCGCAATGTAAAGCCAACGCTCAACACAAACTAGTTTGCTGAATCCGCgtaaaagcaaacattcaaATTGGGATATCACATGTGACATGTTGCTCTTGTCATATTCTTGAGAGAAAAGGACAGCTAAAGCGTCTATTTGAACTCTTTCCAGGGTTTGATTGGCTAGATTCTGTCGAGTCATTCATTTCATTGGCTGCCCTCCCCGATTGCTATCATACTGGAAAATGCCGAAAAAAGTGCTTATATTTTAAGCATTCTAAAAGAAAGGCTTAACATAAACCCACAGACAATAAGTGTGATTATTCAAGAATTTCTTGTGATGAAGAATCTAATTCTTTAGGATTCTCACAGGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006300 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF04127 all species →	DFP	DNA / pantothenate metabolism flavoprotein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR035929 all species →	Homologous_superfamily	CoaB-like superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR007085 all species →	Domain	DNA/pantothenate metabolism flavoprotein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065052944.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.