Gene detail

Detailed information of XP_065053262.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1662:5106799...5126163
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135682336

ATGAAGTTCCGGAGAATCCGTCGATATAGGCCGATGAGCGTGCAATCGCCGATGATGGAGATAGAAACACCAGAAAGCCCATCAATTTTAGATATTGGCCGATTCATTGACGATCTCAAGTCTGCGGCGCAGAAAACTGACATGGATTTGAAAAACTATAAACAGCAACAGGAAGATTTTGTCATTCGATACCAGGAGATATGCAAAGTTGACGTGGAAATCAGCAAGGCCACAGAGCGCCGTGATACTAAAGACCAGATGATTATACTGCAAAAGAGGAAAGCTGATATTGAAAACATGTTGAAAGAAAAAGCCCTTGAAATCCTCAATGACCGTGAGGCGATTTTTATACAGCTGGAAAGTCTTAGTTTGAAGATAGAACAGGTTTCCCAAAAGGTTTACCAAGAATTGTTTTTGTGGCGTATGAATCAGCAAAAGTCACTCAGTGGAGGAGACAAGCCAGACCCACTTGACGAATTGCAAAACTGGTTTGAAGCCTTAACAGACACATTGTGGTCCATGTACCAACTGTGCACGCAGTTCAAGTTACTTTTTGATGCTCTGCCAATTATAAGGAATGGCGATGAAAGGGATAAAACCGAAAGGGTCTTAGCAGACGCAGTATCAAGCCTCACAAAGCTAATCCAGAGGTCATTTATTGTTGACAAGCAGCCACCACAGGTTCTGAAAACCCAGACAAAATTTCAAGCGTCTGTTAGATTGCTGGTTGGTACCAAGCTCAACTTGCAGCTTAACTGCCCAGAAGTTGTTACAACCATTTTAAGTGAGAAGCAAGCCAAAGAGCTATGCCATGGAAAGACGATAGAAGATACTGGTAGCTGTGGTGAAATTCTGAACAACAGAAGCGTAATGGAGTACGACCAGCAATTGAATGCGCTACATGCAGACTTTAAAAATTTGTCCTTGAAGAAAATAAAGCGTCAGGACAGAAAAGGACAAGAGTCTGTGCTAGAAGCGAAAAGCTGTTTGGTGTTCTCTGCAGCGATAACAATTGGAGGAGAAAAGCTTCCAGTTATGTGTATGTCTGTACCAGTTGTGGTTGTTGTGCATGGCAACCAAGGCCCAAATTCTGAAGCAACGATATTTTGGGACAACTTTTTTTCAAACCCGGACCGAGAACCTTTCGAGGTGCCAGAGGAAGTCGACTGGGATGAAATGTCCTTCGCTCTTAATGCAAGATGGGCAATGACGACAGAGTGTGACTTGAAAGAAGAGCATTTGGAATATCTAGGCTCGAAATTGTTTCAAAATTGTGAGAAATCCCAAAGCAGCCGTAAGAAGGTATCTTGGCATGCATTTAATAAGGAGCCATTGAAGGGTCGCAATTTTACTTTCTGGGAATGGTTTCATTCAGGAATGGAGGTGGTGAAAAGGCATCTTAAAGATCATTGGAAAGAGGGATATCTGGAGTTCATGTCAAGAGAAGAGGCTCGCAAGAAACTGAATGATATGTGTGTTGGGACGTTTATAATAAGATTCAGTGACGGAGAAGTTGGAGGGGTCAGCATTGCTTGGGTTATTGAGAAAGAAGGGGGAGGCGCTGATATATGGAATGTGCAGCCGTGGACTACGAAGGATTTCAACATCAGATCTCTTGCAGACAGGATCTTTGATTTGGATCTGTTGAAATACGTCTATCCTGGTGTTGAGAAGGAGCATGCGTTTGGAAAATTCAGATCACAAGACTACTACCCGCGTGAACCTGGCCCAGATGGATATGTCATGGCCAGCATTATGGCGAGAATCAATTGCAATCAGCAGCAGCAGCATCCGGCAGCGTCAAGAATGGACTCGCTTCCCTCCCCTCCTTCTCGTGAAATGCTCGAGTCGCAACTGATAAACAGGTTCAACCCCATGATGAATTTATCTGGGGACAGCGATGCCATGTTCCAGAATGCCGATATTTATGACGAACCAGCTGTTCAACATTTCATTGAAGATATTTTGGCTAACGGTGATGGCAATTCGCCTAGTGTGGAAGATTTTATCCGCAACTTGGAACTGGAGTAA

Transcript

rna-XM_065197190.1

GAACAAGGTATCTCCGTCTTTGCAGTCCAAGAGCATCACTCTCGAACAAAAATGCGCATCATTATCATACAATCATTATTGTTGATATTGATCATGATTATGATTGGTCGCGACTGAAAGACGATTCATTCATCATGTTTTCGACTTCTGGTATTGATTTCTAAGATTGTGAACATTATTATGATTATTCATTTGTAACTGTTGTGAACTGATCGACTAAATTATTCATATGATGTTGGAAATCCCGCTTAATGTCGTCGCAAATACGAATCCAAGATAGCAATGAAACGAAAATAGTTTGCAGTTCCTTGTGGAAGTTCCTCTTCGCCCGCAATTGACAATCTCTTCCACATCCACCTGCTTTGGTTCCTTAATCCCTCGCAGCGTCCTTAAAAACTTGCAGTGCGACTTCCTATATCAACCTGCTTATTATAATATCAGAAGGCTTTTTGCCAAGTTGTTATAAACACCCGAGCAGTGacataatttttaagaaaaatgaagttcCGGAGAATCCGTCGATATAGGCCGATGAGCGTGCAATCGCCGATGATGGAGATAGAAACACCAGAAAGCCCATCAATTTTAGATATTGGCCGATTCATTGACGATCTCAAGTCTGCGGCGCAGaaaactgACATGGATTTGAAAAACTATAAACAGCAACAGGAAGATTTTGTCATTCGATACCAGGAGATATGCAAAGTTGACGTGGAAATCAGCAAGGCCACAGAGCGCCGTGATACTAAAGACCAGATGATTATACTGCAAAAGAGGAAAGCTGATATTGAAAAcatgttgaaagaaaaagccCTTGAAATCCTCAATGACCGTGAGGCGATTTTTATACAGCTGGAAAGTCTTAGTTTGAAGATAGAACAGGTTTCCCAAAAGGTTTACCAAGAATTGTTTTTGTGGCGTATGAATCAGCAAAAGTCACTCAGTGGAGGAGACAAGCCAGACCCACTTGACGAATTGCAAAACTGGTTTGAAGCCTTAACAGACACATTGTGGTCCATGTACCAACTGTGCACGCAGTTCAAGTTACTTTTTGATGCTCTGCCAATTATAAGGAATGGCGATGAAAGGGATAAAACCGAAAGGGTCTTAGCAGACGCAGTATCAAGCCTCACAAAGCTAATCCAGAGGTCATTTATTGTTGACAAGCAGCCACCACAGGTTCTGAAAACCCAGACAAAATTTCAAGCGTCTGTTAGattGCTGGTTGGTACCAAGCTCAACTTGCAGCTTAACTGCCCAGAAGTTGTTACAACCATTTTAAGtGAGAAGCAAGCCAAAGAGCTATGCCATGGAAAGACGATAGAAGATACTGGTAGCTGTGGTGAAATTCTGAACAACAGAAGCGTAATGGAGTACGACCAGCAATTGAATGCGCTACATGCagactttaaaaatttgtccttgaagaaaataaagcgTCAGGACAGAAAAGGACAAGAGTCTGTGCTAGAAGCGAAAAGCTGTTTGGTGTTCTCTGCAGCGATAACAATTGGAGGAGAAAAGCTTCCAGTTATGtgTATGTCTGTACCAGTTGTGGTTGTTGTGCATGGCAACCAAGGCCCAAATTCTGAAGCAACGATATTTTGGGacaactttttttcaaacccGGACCGAGAACCTTTCGAGGTGCCAGAGGAAGTCGACTGGGATGAAATGTCCTTCGCTCTTAATGCAAGATGGGCAATGACGACAGAGTGTGACTTGAAAGAAGAGCATTTGGAATATCTAGGCTCGAAATTGTTTCAAAATTGTGAGAAATCCCAAAGCAGCCGTAAGAAGGTATCTTGGCATGCATTTAATAAGGAGCCATTGAAGGGTCGCAATTTTACTTTCTGGGAATGGTTTCATTCAGGAATGGAGGTGGTGAAAAGGCATCTTAAAGATCATTGGAAAGAGGGATATCTGGAGTTCATGTCAAGAGAAGAGGCTCGCAAGAAACTGAATGATATGTGTGTTGGGACGTTTATAATAAGATTCAGTGACGGAGAAGTTGGAGGGGTCAGCATTGCTTGGGTTATTGAGAAAGAAGGGGGAGgCGCTGATATATGGAATGTGCAGCCGTGGACTACGAAGGATTTCAACATCAGATCTCTTGCAGACAGgatCTTTGATTTGGATCTGTTGAAATACGTCTATCCTGGTGTTGAGAAGGAGCATGCGTTTGGAAAATTCAGATCACAAGACTacTACCCGCGTGAACCTGGCCCAGATGGATATGTCATGGCCAGCATTATGGCGAGAATCAAttGCAATCAGCAGCAGCAGCATCCGGCAGCGTCAAGAATGGACTCGCTTCCCTCCCCTCCTTCTCGTGAAATGCTCGAGTCGCAACTGATAAACAGGTTCAACCCCATGATGAATTTATCTGGGGACAGCGATGCCATGTTCCAGAATGCCGATATTTATGACGAACCAGCTGTTCAACATTTCATTGAAGATATTTTGGCTAACGGTGATGGCAATTCGCCTAGTGTGGAAGATTTTATCCGCAACTTGGAACTGGAGTAATCCCAATCAACACGATGGAAACCATTCTATTaaatattagaaaaagttCGATTTGGGAATTGTATCTCATAAAATTATAAGCTGATGGTAGATAAAGATATAATAAttattaactttttctttgtcgtTTGAGACGCAAAACACAATTTGGAATTTCATTAAGGAATTTCATGGTTTCATAAACCAAAGTATTTCTAATATGCCATCTGATAACTTTAGGAAACCTTACCTGATTTCCTCCTGCGAAAAAAGAATTGTGCCTTGCgactaaaaatgaaaggctttgattattgaaatgttttcgtATCAAATATCTGTGGTACAGAGTTGCAAAACTTGGTTGAATTACATTATAGGAGAAAAACAGAAGGAAAACTCCGATCATTAGAATTTGCCGCTTTGTGCTACCCCATgctcaaatgttttcaatctTACCCAGTTTGTCTTCCTTGAGGAAGATCATTGCAGGCAAATTTGTGGTGCTAACGCCTTCCCACACAGTCAGTCAAATACTGTTTGGCACAATGAAACTTGAGGAAGGTACGGTCAAATCGGTTTTATAGCCTGTCGCCCTTTCCCGAAAACGAGGCTAGCCAATGAACATTATTCTCCTCACGTCTAACAAACAACAAAGATACCGCTGAGAGATCCCCCACAGAGATATGATTTCGTTTCTGCCCTTCCACATTAAATATCACGTGATTTAGGTACCTGAATTTGATATTCGttataaactttgttttgatttcatacAAACGTTAAGTTGCTTCAGACAGCAAACgtgtttaatttttagaaaggtAATTAATAGCCTCTGTCTTGTAGTTTTGTATAGTTTAGTTGGTTTGAAAGAGAGACTGTTTTTCGTCATAAAACAGGGAATCTTTCCTGAAATATCTGAGGCATGGCCAGACTGTGTCCATTGAAATAAGTTTAAAGTTATGCTTTGACTTGATATGTATTGAAGAAGATGAGCTTGTCTCTCTTAAAAATGAGAATAGTGCATCTATGGatttatagtttttatttttatcactgcactTGTAACTCGTTTCCGGTATTATCAAAACccgaatttttttttaatttttttgttttcatttctggAATAAAAAGTTGTAGATAAAGCTGCCATAAAGCTGTgtatgaaagtttttgatttcttATCAGAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01017 all species →	STAT_alpha	STAT protein, all-alpha domain	Family	Interproscan
PF02864 all species →	STAT_bind	STAT protein, DNA binding domain	Domain	Interproscan
PF21354 all species →	STAT_linker	Signal transducer and activator of transcription, linker domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR013800 all species →	Domain	STAT transcription factor, all-alpha domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013801 all species →	Domain	STAT transcription factor, DNA-binding	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR048988 all species →	Domain	Signal transducer and activator of transcription, linker domain	Interproscan
IPR015988 all species →	Homologous_superfamily	STAT transcription factor, coiled coil	Interproscan
IPR001217 all species →	Family	Transcription factor STAT	Interproscan
IPR012345 all species →	Homologous_superfamily	STAT transcription factor, DNA-binding, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11801 all species →	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006952 all species →	Biological Process	defense response	Interproscan
GO:0007259 all species →	Biological Process	cell surface receptor signaling pathway via JAK-STAT	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11224	STAT5B; signal transducer and activator of transcription 5B	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.