Gene detail

Detailed information of XP_065053873.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1662:15153652...15168444
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065197801.1

CAAATCAGAGAATATATCTTCGATGTGGTATTGCGATGGACGTATTGATATTGGTGCAGTGAGACGgcatattttgcattttcgaACAGATGGTTAACAAACATGCCTGCCCTTGCAAccagaaaacaaatttcttcagGATATTGAAACAAGAGTAATGGCCCTAGAAGAAGACATCGCTGAACTGAATTCCGTGCTCGACGATCTCAACAGCATGATGAAGGATATCAGCGTTCAAACAGTTCTGGAGTTTTTTCCATCAAATAATAATGAGACATTTAAAGACATTCTTACTTCTGAAATGGACACTGATGGGCCAGCCGGAAGGCTGTTGCGCACTCTGTCAAAAGATGAAGGAAACAAGAGCCTTTTACATGCAAATAACATTAGCAAAAGCAATGAAGTACAAAGCGTTAGCTCTTGCAACGTCAACAGCAGTTGCAACCATGAAAATGACCAGGCCAGCTCGGTCTCCTCAAactctttttcaattgatgAAACTATAGTGGATCTGGCCTACTGTTCAGAAGGAGGCTCGCATACCAGGCCGAATTCGATTGTCAAGTTAAAAAGCGAATGCAGTTCTGAAACCAGTACTGAGTACGAAAATTCTTCGATGGAAAATTATCCACTCTCCAACGGGAAAGTATCACCTGAGAAGTTGCATGTCACTGTATTTTTCCAAGAAAGGCCTATTGACCTGGAGATTCCGTTTTCTGCTACTGCCAAGGACATTGCACATCGCATTATTATCATCAACCGTCTTCAAAGAAGCCAGGAATGGACAATTTTTGAATGCTTAACGGATTATGATTTGGAACGAAATTTAGAAGATCACGAACTCATCAAAGATGTGGTCAAAAATTGGCCTAAGAATTCGGAAAACCgtctgcaaatgaaaaatttcaccaaaaagtacgaatgttttgaaaaaccgGCAATCTACTTTCCAAGCTATCTTCTTTGCAACGATGAGACAACGAAAACTGCCACACTAAGAGCCGATGAACAATTGAGCCCCGAATATGCTaGTTATTTCATGTCCGACAACAAAGTTCCTCAATTGGAAAACTTTCTTCACTTGAAAGAATATCGCAAAAAAACATGGAAGAGAAAATACTGCCTGTTGAAAGCTTCTGGTATTTTCAGTTCAAGCAAAAGTGGCTTTAAGCGAAGTTCAAGAGAAGTTAAATGCAATGTCGAGTTTGAGGACTGTAAACTGTTTTTTACTACATCGTCGTTCAAAGGGTCACAAAGTGCTCCATTTGCCCATTGTTTCTGCTTTGTTCCTGACAATCTTGCATTCcataaagatatcaaatgtttCTGTGCTGAAAATGAACAAGTGATGCAAAGTTGGGTTGTCGGATTTCGACTTGCAAAGTTTGGCTCGAGATTGTACAGGAATTATAAAATTGCCACTCAGGATAACAGAGCGGCTAAAACTGTTTCTGCGCCGGTTGATATGGATTCTGTTATCAGAAGAAAGCGTCCGTCAATTGACTATCGCGTGCCTATCGACTTTTCTGGCAATGCAAGCCGTGTCGTGTCAGACCCCGATGCAGCAAAAGCAGTTATTAACTCAATTTCGTCTAAACTTCCGAAGCGCTTGAAGAGAAGATCAACTGGAAGTTTTCATTCACCTTATTCATCCGGGGTGCCAGCTGTCGTTGAGAAACCATGGTTTCATGGGAAATTGGAAAGAGAGCAAGCTGCAAAGCTCCTTCGAAGCGGCGGCCTAGAAGAAGGactGTTTTTGGTCCGAGAGAGCTGTACGTCAGCTGGCGTCCATGTCATCAGTCttgtgaagaaaaaaaagattctCCATCATCAAGTCTTCAAAGCCGTTGGTGAAGGCCAAGTCTTTTACGGCCTTGAGCATGGGCCTCGATTTCAGTCGCTCGAACAGCTCATAGAATTCTATCAAAACTACAGACACGCTGGAAAACCTCCATTGCTGCGAAAAGCTTGTAAACGTATTGAAAAATAGATCAAAGTTTATTTTACTTGCGAATGCCTTGGCTGGTACATGGACGCAGTCTTGGCAGTCGCTAGATGACAGATTACGAATCATGAAATCGTCCCCATGCCGCCAGAGATGATACAAACCACCTTGTACAGCTGGGAACGTGGAGCCTCAGTTGCACattgaatgcattttttgCGCCAAACtctttgtaaatattgtaatgtACATAAACCTGTTGTTGTCTTAATTTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR039665 all species →	Domain	APBB1IP, PH domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR039664 all species →	Family	GRB/APBB1IP	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11243 all species →	GROWTH FACTOR RECEPTOR-BOUND PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_065053873.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065053873.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.