Gene detail

Detailed information of XP_065054641.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1672:8396499...8413460
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065198569.1

CTATAAAAATGCTAGACgcgaaaatttttagataaataatTTCACAGACAAGGGAATAAACATGGCCAAATCTAGCACTATTACAATGTGGCCAGATACTCCTAACCCCAAAATGCAGCTGTGCACAAAAAATGCAGCTGTGCATGAATTGTTTGAAGATGCTATGAATTTACTTATTCATCCCACATGGTGTCGgtgaagtaaaaaaatatctatacACTTCTGGCAAAATGCGGTCTAGCcaattcttctaaaaatgcGTAAAAAGTATTTCgtatagaaaaataacaatgtttCGAAGATTGTAGTTCTAAAATGGTGCAAATAGCAGATATTTCTGCAAcccaaaaattttccaatagAGATTATGATGTCCATTATCCAATGTAACAGTGTCACTGTCACAGGTTTTTTCCCTCAAGTTGATGAATCTGCGGCTCCGCGAAGGCGCTTTGATGGCCACGCCATTTCGGCATGTTAGACCGTGGgaattatcttcaaaaaatcattcacAGAGGCTTGAAGGGGAAGCGCCAATTCAAGATGGCTGCCGACACATCTGATCCACGTGGAGTGAGATCTTGGAGGCGTCTTGCTGACGTGAGTACGATAGAAACATGTGATGATCGAGTACGGAAGCATTCGCGTAGGAGAATATCTCCAAACCTGAAAGGAACTTTTCCCAGCGATATTAAGAAGGTATTCGTGTCTGCGTGGTTAGGCCTTTACAGTCTTATCCCGTGGCGATGCgttaaaaacagaaagataAAGACCGTACGCGATCACAAAGTTTCAAGAATAGTTTGGGTTTGTATCAAATCATATccttcttgaaaaagtttgtcaGATGGTGCTGTTGAGCGAACGAACCAGCTTGCTGGAGACGGTACTGACCATGTCCGACATGCCCCACGAGAAAGATGGTGGCGGCGACCCAATGTCATGCCCCCTTTGGAACAGTGGTGTTATGGAATCAACAGAGCTGGAACTAGAAGAACAAGGAGCTATAGATAGAAGTACAATTGTCATTTCAACGGAGTTTGTACATGCCGGTTCGATGCTAACTGCCTTCCAGAGCATGGGTGACCCATCAAAACTGCCTCTAGATTCACTTCACAGCAGGCCACAGAGTTGTTTCGACAATTATCAAGCATTTTGCATAGCAGCAACGTATTACCCAGGCGCTGTACCTGTGGAGAGTCCAAGCAGTGAAGTCATACCACCATATCACGATATACCACCATTGGGTGAGGTTGATGCATGTGACCATGAGAGTTGGATGTCCAGGATGAGTTGCCTGAAGCTACTTGATCGCTCGAAAAGTTCTCGCCGTTGTCAGTTCTCAAGAATTCCAAGAGATACATGGGTGTTTGAGTTTCCTCAAGAGCTGTGTGGCCGGCTCATCGGAAAGGGTGGGCGCACCATACAATCAATCATGCAAGATTCTGGAACTTACCTGACACTGTGCTCTGGAAAAATGAATGCGTCTGATCAGGTTCTTAAAATCACTGGCACAGAAAACCAGATTCTAAAAGCGATCAAGATCATCGATTCGAAATTCTCCAGCGATGTCAAGGCAGCTGAAAGCAGGGTACTGCCATTGACGAGAAGCGATCAGGCCGTAGAGGTGAGGCAGGTTCAGATCCCAACAGACAAAGAGGTGGATGTGGTGATTGCAAACATTCTAAATGCTGGTCACCTCTATCTTGCTATGCCCAGGTTAGCAGCGGTGGGACATATGAATGCATTTGAGAAAGAAATGGCAAAATGCTACAGCTTGGGTCATATTCCTAAAATGGACAGAGTCCCTCTTCCTGGAACCTACTGTGTTGCAAAGTCTGGTGATAAATGGGTTAGGATTCAGGTTGTCAGCAGTTTTGCACAGTCCAAGAAGGTTGAAGCGATTCTTGTAGACTATGGAACCTATGTCATGTTTCCAATTTCGTCACTGCGCAAGATCAGGGCAGATTTCTTGGAGATGCCGTTCCTGGCTGTTGAATGTTGTTTGGCTAACATAATACCGCTAAATGgtgatttattcttttcaatgaCCGTAACGAATCTCTTTCAAACGCTCACGGAAAATCGCAAGTTGAAGGCAGTTGCGCGCGCATCTACAAATGGCGTGCAATATGTCGAGCTGTTCATCCAAGAAGATAACAAGCTATTGTCTATAAATAGACGGCTGGTGGCCTGTGGAGCTGCGCAGTGGATCGATATGTAGCTGCGCATTTGTTTGACATGTATAACAAGGCATCACAGAGGTTTGTCAGATAATCCAACTAGGTGATAATTGCTTCCAGGAAAACCTATGTTTTCTTTAGAGGTTTCAAAACAGGATTCTAATGATAACAGtactttttctgtttgttgataatcctgtataaatattcgatttattattataattattataatttattatagtttattattataaataaTACAATTGATTTACGTTTAACCTGTTCATCTCATTTTGTCTGTTAAATCTTCTAAGTGAAAGTCTTCATCGCTGTAGTTGCTTTGCTTgtcaaaaacaacttttgaagATAGCATGGAAAACCgaaaaacaaacgaaaaaaaaGTACTTTCCATTCGACTCTCTTCATGGTATAAACGTCGGATAACAACGAAAgttaaacagaaaatttatatccagatgCGGTCCGAATCTGATTTGTTCCTTGCTTTGACCAATCAGCAACGTTTCTATTCATTGGAGTGTCGGATGAAAAGTTCTCTAGTATGTTATGTTTCCGCTTTCTGTGCTATCTTGAGTAACAACTTTGTAGATTCGTTACTCTAGCTTGAATTGCGGGACAAATTGACTCTATCGTACACGTTTCTTCCTGTTCATTGGTCCTCCCTGATAGTCAAGAAACATTGTTCGGAGAATGGGTTCAGTAATGTGAACAGTGAATTTGCCATTTGCCAAACAACTCTATCAACAGTTTGAGACgatatttcaagattttcaagttattttgcCAGTTTGCACTGAATATGGGGTGCTCAAGTTTATTTGGTCAGGTACTAACAAATATCTAGCTTGTGTAACACGTTGTGACATAGTCAGGTGTCTGAACTTAAAGCGTTTAATGAGATTTGAACTTGTCTAAGACGAATAAACAGCACACTTTTGCTGGTTAATTaaacttttcttaattttgttatatgtttaattttctagaaatatatAAAGAGACAGCTCTGCTCATTTCATAATAATTCAATAATCGATTAAATCTATTAAAGGGTTAAGGGGGGTGTTTATATAGATAGAGCTGCCCCTATTAAGTTAGCTGGCTCTGTTTGCCAGGGTATTTTTTTCGCAGCGTTTGCATGCAGCAAGCACTGAAAGCCCTTACTACATTGcagccaaaatgaaaattgctatCTTTGCAAACTTAGAAAATACCTATCCTGTTTAAGCGAGAGGTCTTAGAAAATGAGCTAGCTTACCTCCACCCAGGGCCCAGACCCCCTGATTTTCCCCCACGTGATGTTTCAGACCCCCTGatttcccccccccccccgtgaTGTTTACGTACGCATTACACGGAAATTTGGGTGCAACACTCTTGTAAAAATGCCCATTTTACAAATGTAACACTGCTGGTGAAATCAAAGCCAACGCCGACATCGATGCATCCTGCCTTGATAacttatttttcaactttactAGTCGCTGAAGATATCCCCTTCCATCCTGCAGACCCTCCAACAAACCTAATCCGCGGTTTCCCTCACTAGAACTTTCTAACAACCGGCTACCTTCATCCAAAGCAAAGACTATTTTCTCAACAACAATCATAATGATTTGTcttcaattttgcaataataaccttggcaattttttaatcGTTTCTCTACAAACAATCTTTTAGTGTATTAACATTTTATCTAGTTATTCATAGCATTTAGTAACCATAAGTTTTGATGTTGAGAATTCTATTCAGGACAGTAAATATTTATCGAAGAAttaatttcatcttttcataTTCTACGTTTAGTATTTAAGGAAAGAATAAATCTTTGTCTTGGTGTTATATTATGATATTTATTATGGAATATATTATACTCATTACGAAGTggattgaaattgaaaattatttttcacgTGTTTTGCCTGCTATACTAGATTGTCGTTGCAAATAGCATGCTTTTAGGGTTGGTGAGTGCCTCTGTCTTAGCCGAAAAAGCTTGACCTAAACCAAGTAGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR039117 all species →	Family	RING finger protein 17	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16442 all species →	RING FINGER PROTEIN 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065054641.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.