Gene detail

Detailed information of XP_065054656.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1672:5607101...5616511
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065198584.1

ttcatgaccaCACCCATCAAACTAACTTGATTATGAAAAATCTCGATAGGTTTTAGATaatgaacaaatttcaaagagaatTCATAGATTATGATCATTGTTACTGTTATGTTCTCGTTTTTGATATTGTAATGCTCTTTTATAAGCTATATGTGTCTACTGGCAGttgcttcaattttgctttttcattgccaaatctctttattttagatttatcactgcacaaaacttgagtttatcactgcacaataATGATTCATCACTGCACCAATTGGGTATCACTGTACGTTAAAATAAACCCTGGGTATTATATTTCTGCATGATAGGGAAAGTATGATTTTGCCACAGTAATAAAAGAACCTATTTTAAAAGCCTTGTTAGCCTAAATTAACTGTAAGTCTAAGCACCATTCATATAAGAATCTTTCtaggtttattgaaaaaaactagGATCTTATAAGCGGGTTTTTACTGCATTTAACAGCGGCGTCCCATCAACTTAGAAGgccaaaattaaaagaatctataacttcaaaaaaatccctagataaaattattagaattttcaaaatcgatAAATGTATTATTACGTTTTTCACATTTACTCTCAACCTCCCAAAGAATAACTCACTTATCCGTGTTGGAATCGAGGTGTCTTCAGAAGCTATTTTGGAAATGAGGCTAATCAACTTCGCGGGAAAGAAAATTGTAGAGAATGGTgaaagaacatatttttggaatatttcCTTGTCTAGGAGCTCTCCAAGCAAACAAGCGGAAGATATACAAATTGATAACGAAAGATGCGTTTctaaaaaagtcaattttgtCAAAATCAGATAAAATAGCATTTATGATAGATGTAGCAAAAGAAAGAGATTTGAAGGTtgacttcaaagaaaaagccTACATTGATAAACTTGTTGGTAGCAGGCCACATCAGAATATTGTTATGCAAGTGTCACATCTTACCCATGAAAAGTTAGatatcaacaaaatgaaaaatacttcaaatgaATGGATGGAAGacaagcattttcaaaagcagtTATGGATTGCATTGGATCAAGTACAGGACCCAATGAATTTTGGTGCTGTTCTTCGATCTGCTGCTTATTTTGGTGTTGAGGGTATCATTGCAACTGCCAAGAACTCGTGTCGTCTTAGTCCAACAGTCAGCAAGGCAAGTGCTGGGGCCATGGAATGGATGAAGATTCATTCTTCAGAAAACTTATCAGCTAATCTCAAAGAACTAGCATGTAATGGTTGGGATGTTATTGGAACTACCATGCCATGCAAAGAGTACACTGATAGCTCCGATGTGATGCCATGTGCCCAGTTAGTCTTAGAAAAGCCCACCGTCCTTGTACTAGGTAATGAAGGGTATGGTGTTAGTGGTGACGTCATCGATGCATGCACTAAACTGACCACTATTGACTCCACTGCAAGTATTAATGACATGGACTCTCTCAATGTTGCGGTGGCTGCagGCATCCTGATAAACCGTTTGATGACGAATGATCAAAATGCATTCATCAAAGGTCGATAATTTTGATTGAGAATACACACACCCCTTGAAGCACGCGTCTGTACATTCGGTAACGCCGTTCAGTGGACGCGTTGAGCAAGCAGGTTTGTTGTGAGGTATTGATGCGCTGTTTGCTGCTCTTTTGTCATCGAATGGTAATTTCGGCTACTACTTAGGCGCAGGTACGTTCACAACGTTCTGTGGAAGAGCAACTTTAATctgtaaatatgttttgatttttggatGAATTAACAAAATCTATATTTGAATGGTATTTCTTATAATGATTGGCAATGAGTGATTGTTATGTATTGGTAGTCGTAGTTTCATTTCGTTTGATAAGcatcatttcatttgataatataaactttttcaattctgCACACGAAAGATTTCCACCAAATGTGTAAAATTCGTGCTTATTCGCGGAATGTGAATCACCTATAGGCACCAACTATGTACGTAGGAACTTTTGGGCCCAAGCCTCTCCCCAAAGGAAGTTTCGCAAAAACGATCAGCCACTGCTGTCGGACAACAACAATGTAGGAGTATATTTGCTCCGTTTAAGTACTATAGATCTAAAAGGTTCTTATAGAAGTCTAGATTCTCTATTAAAAGAACCAACAGTACTTTGCGGATGGTATAAaccatttttataacaatattttaatttcaaattttgagcaatccattggaaaatttaaagttggtaAACGGAAAGGTCCAAATAAATAGTGTACTACACAGTAGTAAGAAAACACAAACTGCACGGAACAGAAACACTGCCAACATATTTTGATAGAGCTAGTTAAAATAGAAATGTCGCATCATGCAGCGTCGTGTAATGTAATGATATCCAGACGATCATGTCCTTTTTACTTATCAAATGCTCTTGCTGGTACAGAGCCTTAAATTTGGAAAAGGTATTCTACTCTTCTACCGAAATCATATATAATGTCAAATCATTGAATACCTTACCCTatatcaaaaaacagaatgagAAACTCACTTTTCACTCTTACAAGCCATCTTTACTCTTCTATATCCTTTCATACTTCTTTCTGCCCACAAAAAGAGATTAGCTATTTGGCAAACCTTTTCCTCAAGTTCCAAAATGAAAgtcttgaaattgaaagcttCTGCTTTTAATACAAAGTTTACAGTTTGTTTGAGTTTTGCCAAAGGTTTTTGGTAACAGAAAGACAGAGAGACACACTTTATTATAGTAACAAAATTCATCTCCAAATTCATTACAGCATTAACTAAAATGACAATCATAATAAGATTTGCAatctatgaaaatttttggataagCCTAAAAGCTGCGTTTCGAATTCATAACAGCTACTCCTTATGATCAAGAATACAAATACTACATTCCTTTGCCTTCATCTGTCTACGACACTATTTCGTTTGTTTTGACATTATTGTGTGAAAGGAATTTATATGTTTATCTTTATCGCACAAAACTGTGTGAACCCTAATGAC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010305 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08032 all species →	SpoU_sub_bind	RNA 2'-O ribose methyltransferase substrate binding	Domain	Interproscan
PF00588 all species →	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029026 all species →	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR047261 all species →	Domain	rRNA methyltransferase 1, methyltransferase domain	Interproscan
IPR047182 all species →	Family	rRNA methyltransferase 1, mitochondrial	Interproscan
IPR013123 all species →	Domain	RNA 2-O ribose methyltransferase, substrate binding	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR029028 all species →	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR001537 all species →	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46103 all species →	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016435 all species →	Molecular Function	rRNA (guanine) methyltransferase activity	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065054656.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.