Gene detail

Detailed information of XP_065055299.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1672:317892...340881
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065199227.1

GATATATGCGAGGGGGTAGAAAGCGTATATTTGAGATACAGTGATTTTCATGTTGGCTGGTGTATGGCCATCTTTGTTGAAATGGGAAAAAACTACGCATGCGcttaatgacgtcataattttAGTTTAAACCCCTTGTCAGAAAAGTTGCAAGCTGTGCATTTACTTTCAGAAAATTTAGAGCACTACCATTTCAATGGTCTGATTCCACAAATAATCAGAATGAATGGAAAAGAGTCACTCGAAACTGACTTCGACAAGGAAAACTGCCTAGACCATTGTTATGCCGAAAGTATAGAGCTACCTGCGGcggaaataattgaaaatttacacAACGCAAAGAAATTTGCCATTGATATTGGTGGTTCCTTAGCAAAAGTTGCGTATCTATCAGAGGCTAGCAGGATAGGTGCAAGGCATTACTGTAGGGGTGGGCCATCAATTAGTCCTGCAGATGAGGTAGGAAAACTGCCCGTCTCCACTGCGCAAGAAGAACAAGAGAAAGTAGCAAAGCTGCACTTTATCAAGTTTGAATCAATCGAAACCTGCGTGGATTTTATCCAAGAGAATATTTTTGATCATCGAAGTGAAACTGAAGATGAATCGATGCAAATCACCGGTGGCGGAGCTTTCAAATACGCAAACTTCTTTTCATCAAAGCTTGGAGTGAAAGTTGACAAGCTAGATGAAATGGCATGTTTGATAAGAGGTTGCaactttttgttgaaaaatattccaaacGAGTGttttacatttcaaaaagACGATGATTTGAAGAAACCGATATACACCTTTCAAAATGTCGACTCCCGCAGCTTATTTCCGTATTTATTGGTAACTATTGGAACCGGTGTCAGCATTGTCAAGGTAGACAGTGAAAGTCAATATATAACACTTGGAGGGACAAGAACAGGTGGTGGGACATTTTTGGGACTTGGTTCCCTTCTGACTGGCGCAAAGGGCTTCGATGACTTGCTGCACCTTGCAACGAATGGTCAACACAATAATGTCGATCTGCAGatcCAAGATATTTATGGTGGTGATTATTCCATGATTGGTCTCCCAGGGCAATTTACTgctagcagttttggaaaagCAGCTAGAATGTCTCGCGAGGACAAAGAAGGAAGCGCGTTTAACAAGGCCGACCTTGTGGAGAGCCTCCTCCATATGATTTGCGATGACATAGTCCAgATATCAACCTTATTTGCTCAGATTTATGGGcttgaaagaattttctttggcGGGAACTTCATCAGAGGTCATCCACTGACAATGCACACTATAAGTTTGgcagtcaaaatattttccaggGGCAGCAGACTGGAGGCTTTATTTCTGAGACACGAGGGCTACTTAGGTGCTGTTGGTGCATTTGTTGCCGGAGCGATAAAAAATGCACCGACAATGAATGGTCTTGTTTCATGGCATGAAAAAGGAGAAGATCATTCGTTACCTTCGGCGCTCTGTGACTTAGATAAATGCCGAAAGTCTTGAAGTCACAATCAAGAGTCCATGACTTGCTTTATacctttgtaaaattttgttcgGGAGATGATTGACTGCATGAATCAGCTTCAGTTTTAGATTTATCAACGACATAACTTTATCAAGTAcaattaagaaaacattttacatcaCTTTCATTAAAATAGTGGATTATTTTACAAACACAGTACAAGCAAAAGACTTCAGTCGATCAACCTCAAATGACACTTGACCAACTGCTCAAAGGTGATATCCCGCTGTTTTTAGAATTGCACCTTTAAGAATATTTGCCTGTGATAGCTATTTGACTATTAAACTCGTTTTTGACTTTGCTTGAAATCAAAAATAGCTGCACTACTTTTCGtaatttgatttattcatATTGGATTAATTAAGCAATGCACTCATCTCATGTTCTTTGTTGCTCGACCCGATAATGACAAGCCAGAACTAGTGGATCTTGTTGCAAAAGTTCCGACTCTCCTGATTTAAGGTAAGGGTCTTCTTATTAAAGAGTTCAGCTCCCATTTCAAACTTGACCTCCCGCTTTCAGGAAATTTACTTATAAATCCTATAAATCCCATATCCAAAAACATGTTCAGCGAATAAATAATATCTACACAAACGTATTTGAAGCTtatcacaaaaaaataaaaatcttaaaaaaatacaaaaaaaaggaaggaaaaaaaattaaaaaaattaaaaaaaagaaaaaaagtactcaaaaagtaaaaaaaattaaaacataccaaaaagaaaaaaacaaattaaaaaataaaaattaccaCTCAAGACCCTTTATCAggttttgtaataaagatgTTATTGTTAGCCCGTAGAGATTTTAGTGGTTGGAAATGCtctctatgcaaaagaaaatcaggGTGGTCGATGGGAGAGCCGCTATACGCATATGCCAAATCGCTTAGTCGTGCTCGTAATTTCTTAAATTCCAAAGGGTTAGAAATCTCACGTTTGGCAAGTTGAGTGTGTATAATTTCGAATTAACCAAAGAGTTCCTCTCTGTTGATTGTTTGGGGTGGGATACAAAATTCAAGTACACTACCTGAGACAAATGTTTCAGTATCGGAGAGCGAATAATccgaaaaattgaaaatatgtttttgggTATCGCTCAACTtagacaggacatatagcctgacaatctgacattgaagctaatgtttgctttctcgACAGATTCTCGTAGTAGGGAGTCCAGGCTTTCATATTCTGCCAGGTaactcttttgaaaatgcctggaTGCCACGggactgatgacgtcatttaagtttaaaaaatcattttcatttttttttcattttaaaattatttatgcacGGTAGCCCCGTCAGTCATGACTGCTTTTCAGGGGGCCGTGccaaaaactttacaaattaaaaaatctactaaaattaataacaaaaaaaggaaactaattacaatcataaataatttatttacaactatttacattaaatttacaaaaaacccTTTATCCTGTTcttaaaagaagataaagaggGAGCTTGCTTGGCCTCGCGGCTGAGATCATTCCAGATTTTTGCTCCACGAAATGCGATGAATGGCACTAGCAAGTCAGTTTCGGCATTTCTAAGGTTGATACAATTGCGTTCAGAATTTCTAACAAATAAATGCGAGAGATAATCAGGCGCGAGACTATTAACAGATTTATATACAGTTGTTGCAGTCTCACTTCTGTCATATCCCTCACAGTTGGCCATTTAATTCTGTAATCAAAGCTTCAGCAGGAGCATCGTAGCTGCTATTTGTAATAATTCTAGCGGCTCGattctgcaatttttgaagcttaacCAGTCGGAACTCTGCACAGCTCCCCCACACAGTACAGCAGTACCGAAAATGTGGCTCTACAATACCTCTATATAGTTTGCAAAGtacattttttggcaaaaatttctttgcatattttaaaaaacctaaCGAGCGGGAGACTTTGGCTTGAACAGATTTAATTTGCTCGTCCCACACGAGGTATTGGTCAACTTGGACACCAAGTTGTAATCAGTTGTAATCAAGTTGTAATCAGACAAAGTTATCGCTAGCTCTTTACTggattgttattttttgacgcaaattgcatattttgacTCGTCTCGTTGCAAGCTTTCAACTGATGTATATTTAAGCATGATTTGACACCAtcagtattttcattataacgtcatcaaaaattttgcatgaagtCATCAAAGATCTTATTGTCATTAAATGATAAGTTGGCAAAACTTTGTATTAGTATGAGGCTGGATGTCAGCAAAAGCATTTcctcaataattttttcaatcaaataattAGTATTTAGATTCTTCTATTTATCACAGACAATAACAATTTATGTGTGCCGGGCTGGAATTGGAACAAGTATGTTGGTCGCCATTTGTCTTATAGTAGATGTAGGGCCAACAAAACTTCGAATAGCTGCGGCAAGGTCCAAGAAGTACGTATTCAATATCTCCGCAAGTGGTAGTTCATCTGGACTAACGATGGATAAGTCGCTCATTACAGCTTCATACAGTGTGCTCTTAACGGTCTTTCTGATGGCACCATCTGCTGTGCTGAGAGGCATCGATACTGGTGCAAGCGGAAATGACAGGGTGGTCTCGAGATCCACACCTGCTTCATGCTTGTTCGAGTAAGCAACTAGAATGCCAAGAATGTCTCTCTGAAATGTgagctctttttcttttcctttaatCTTTAGCCTAGTCTTAAGTGATGAGTCCTTGGAGGTTGTCAGAGGCTCTCTCTTGATGGGaccaaaaaattctttatctgCAGGACTTTTGGTTAacctttctttaaattcattcattcaatctCTTCCCCTTGCCTCCATAGTCAACAAGCAACTGCTGACTTTTTCTTCTACAGGATAGCCGGACACCAAGTTGTACAACTGGTCCTTGTCAAGGTTTTGGCTAAACGGATTGATGAAATGATCCTTAAAGgttgcttttattttctcaaCCATTTTGTTGGACTTAATGAATTTGCTTTGCCGGAGACATTTTCGTGTGTTTGACATGGTGCTATCGATTTCTGCTATCTCCATCAACGATTCAGTAAATCTTGCTTGGAATGGTCGATACATTACCCACTTTCTAACAGTATTTTCTTTCGTTGCAAACAGTGTAACATCACCAGTAAAAAAGCTATAtatgaaatgcaaattcaaatgagAAGAAAGCTACAATAAAAGATCTCCCTGCAATAGTGGTGCATAGATGAGCATCAAAAGACCCCTTACCATGTGGTACAGTTCTATCATGCAAACTAGTGGGCATTTAGAAGTTGACAACAAAGCATCatacaaataatttctatCAAATGTGACTGAACATTTCGGAAATTGAATAGTACCTGTTGTCTTTGCTGATCGCATGTAACTCTGCTCTCCAGCTAGGTCGATTGACTGTCCAATTCCAAGCTTAATACGCCGAATTGATAGGCCAACACCCTTGATCTCATCTTTTGCTCCAGGATGCGTGCTGTCTATGTGTTCCAGAAATTGAAGGTAGTATGTACCGTACCTTGAATAGTGCACACGATTCGTAGCAAAGCAGAGTGGTAAAGAGGCATTCCAGATTATCATTCTCAGATCGTAGTCATTGCAATTCACTGAATAATGTAGCATGTGCTGTCGATTCACCATCTTCATGTATTCGGTCAAGTACTGGGGTGTTCTCCCGAAATCACCATTTATACATCAACATTTTGTAGATTGATATCGGCTAAGATACTCCTTTACATCATCTTCGTGAATGACTGTCGGAACACCTGTGACCTATGGAGGCCctttgaagtattttttaattgaatctGGCATATCTGGCAAAAATCTATCGAAGAAAAGACGTTCAAGTACTTCTGCAAATGCTTCATGAACTAGCCAGCATCGGTTATATTGCTTCCCACAagttttttctgtcattttcaATCGATGTGGGTGGTGTGATGAAGtgtttgttatattttgaaaaggtatAGACAACACTTCTAATAAAACTTCCTTTGGTAAAGGTAGTTTACTTTTACTTATTTCTGAAAGTGATGTACCCAGAAACCTGGAAGAGACTAAAGGTTCGGTTTGGCCAGGGTTCCAATCACTCGGTTCTCAATCGTCTCTCTTTTGTGAACATATTCATGACCTCTCACTCCGGCCTATCACCCTGTCCGAATCTTCTTTATAGCAGAGAGACAGTAATTGGTAGATGTAGATGAATTAcgttgtaaaatgtttgtcatTTCTTGTTATGTTAGAACTTCATTTTACATTGTGAAAACGAGGCTGCTTGCCCTCCTGACAAGCCAAAATTATATGTTTAACGTTAATGCCCAGCAAGCATAgcggtcaaatctttgattggccGAGAGCTCTGTTCGCTACCATGTTCTAAGCTAATCAGCACACAGGATTCTCACAACAAAATCGCTTCGCAGCTagaattaggcccattttcgcCATTTCAGCGTGTTTTCACCACATTGTCTACGAAAAACATTGCACACCTCTATAAAGCGAATTTTCACTTTGGTTGTTGGAATGGTTTCTGAAGACATGTTGTGTAGTGCACGTGTTTAGCACAAGTcgcatttttatttatcttcggTCAAGGGAGATGTCTTTTTCGGAACCTCTTCTCtgacaatttttgttcaagaaTTGTACCACTCTAGtgcttgacaattttcaagtgattttcatTGCCtaacaaaacagcttttggATGTATCATTTCCTATCATGGGGAAAATGTGTAAATTTTCCTGGATTCTTCAAACTCTGGTTGCAAAATGTCCTCAACTTTCTAAAGG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001785 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03630 all species →	Fumble	Fumble	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004567 all species →	Family	Type II pantothenate kinase	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12280 all species →	PANTOTHENATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004594 all species →	Molecular Function	pantothenate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015937 all species →	Biological Process	coenzyme A biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09680	PANK1_2_3, CAB1, coaW; type II pantothenate kinase	EC:2.7.1.33	Pantothenate and CoA biosynthesis	ko00770	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.