Gene detail

Detailed information of XP_065055311.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1672:1286123...1298884
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135683858

ATGGCAACCATGGAGGAACCGAAAGGAGATTATTATAAAGCAAAGTACCAGGAGCTGTTAATGGAGAAAGACAAAATTGAGCATGAGTTTGGCCTTAAAAGAGCCAAATTTAGATCAATGTTTTTAGAATGTGAAGCATCGCTTAAAGAGGAAAAACTGAAAAGTGAAAGCGCAGTACAAAGGGTAAAAGATCTTGAAGAAGAGATTGCTAGCTTAAGGGCCAGTGTAGAAAGTGTCCAAACAGCTGCAAAATTATCATATGAAACAAGAGATGAAGAATTAGCTGCAATGAAAGTGAAACATGTTGAAGAACTTGCTTCAATGGAGCACATATGGAAAGAAGCTGTAAATGAAGCAAGGGGAACAACTGCTAAGCATTTTGATGAAGAAAATAAAAGACTTATTGCTGCAAACCAGAAGCTTGAGCAACAAATTAAAGCCATGAAGTCGGAGGAGAAATCAGAGGGTATAATGTCCATGGTTTCACAAGCGATAAAAAGAGGGGCCGGTGCACCTCCAGCACAAGATACAAAGGCAGAGAATAAAGATGACGAGCTTTCTGACACTTTGAAACAGGCACAAGAAAGTGTAAAGGCTTGGCGATCAATAGTTTTGCCCCTCGAAGAGGAAATACAGGCATTGAAATATAAGCTTAAAGATGCCAACCAGAGGCTTAAAATATTTGAAGCAAAGGCTGCTAAAACCGCAATAGAAGGTGAAACCTCCACAGAGGCTTTAGTCAGTAAAGTACAAGAGCTACAGACCTATTTAGATGCAGAGCGCTCCTCGCGGACCGATCTAGAGATGTTTGTTGCTGTATTAAATACCCAAAAAGGCGTACTTCAAGAAGACGCAGACAAATTAAGAAGCGAATTACATCATGTTTGCAGGCTGTTAGAGCAAGAAAAGACAGACCATAAGGACCTGAAAGAGACTTGGAGGAAAGCAAACGAGCAGTTTTTAGAACAACACATGGCCCTCTCTTGGGAAATCGAAAAGATGCGCGAGCTTCTAACACCAGCACAGAATGAGCGTCTCTCAAAGGAATACCGCCAAATGCAAGCCCGACCGGCGCATGCTGTAAAAACACCTACCGGACATTCCCAGGCGGCCGGGAATTCAAATGACGACCTCATTAACTTTGATGATAGCCCTAAGAAAGACAAAATTTTGAGGCAGAGTAGTGTAGATCCAAACGACGTTCATCTTATTGAGAAGATACAATCTTCGACACCTTCAAGTAATGGAAGCGTTGATAGTCCTGATTCATCACCATCTAAAGTTTCAATGAATCGCTTTGGAAGCTTGGAAGAAGGGGAGGAATTACAGGAAGATATCGACGGAGTGAAGCAGGACAAAGAGCATATGATGAGAAAGTCTGCATCAAGCTCGGATATATCCAATGAAAAAGGCATACGTATTCCATCGCCGGCTGGCAAATCTTTGTCTCAAGGCGACGTCTCTGCAGTTATTTCTGCATCAGGGGAAGATGCTTGGGCAGTCATTTCATCCCCAACAGTAGCCGAATTAGAGAAGAAATTACATTTGAACGAGACTGGATGGAGTACAATGAAAGAGTCTTTGACAACACATCCAGCTTGTATGATGTGCCAAAACTACGAAAAGCAGTTGCAACGGTTGCAGAGAGAACATCTTGATTTAAAGGACAAAAAAGATGCATTAATGACTTTCGCAAAGAAGGAAAAGCTGGAATTACGTGCAGAGAAGGAAAAAGTTGACAAGCTGGAAAAAAGTATTTGTAAAGCCTCTGAAGATGCCCAAAATCAGATTCATCTACACGCCGAAAAGGAAAATGAGCAACAGAAAATCTTTGACGAAATCCAAAACGATTTCTTGTCGCTACAAGAAGATGTTCATTTCAAATTGCTACAACTTTCTGAAGATCGAGATAAAATGATGAGCGAGTTGGACTCACTGCGCGAAGAAAATGCAAATCTAAAAGCAATCCAGGAAACGTTAAGAGACGATCAACAACTCACAATGGCTTCAAAAAGTGAAGCTGATCCTCAAGTTGTCAAAGACAAGATGGAACAATTGCAACTCAATGCCACGATAAACGAGCAGCAGCTACGGAGTGAGATAATGTTCTTAAAAGACCGTGTAATGGCAGAGCAGTTCGATAAAGAAAGTACCGAGAAGATATTGCAGTCAGATCTGGACCAAGCTCGACAAGAAATAGCTATGCTAAAAGAGCAGCTTTCAATTCAAGACACCGGAAAACGAAAAGAGGTTGCTGAAGATGAAAACCAACCCTGA

Transcript

rna-XM_065199239.1

agaaaaagaaaaacaaaatcgAGGCCTTATGAGAAAAATGGCTGATGAAAAGTTAGGACACCGACCAGTTCATGAAAGTCTGCATGTTAACACAAACGAAGGAAActaattttaatattaaatAGGCAAGAAGAATGGCAACCATGGAGGAACCGAAAgGAGATTATTATAAAGCAAAGTACCAGGAGCTGTTAATGGAGAAAGACAAAATTGAGCATGAGTTTGGCCTTAAAAGAGCCAAATTTAGatcaatgtttttagaatgtGAAGCATCGCTTAAAGaggaaaaactgaaaagtgaAAGCGCAGTACAAAGGGTAAAAGATCTTGAAGAAGAGATTGCTAGCTTAAGGGCCAGTGTAGAAAGTGTCCAAACAGCTGCAAAATTATCATATGAAACAAGAGATGAAGAATTAGCTGCAATGAAAGTGAAACATGTTGAAGAACTTGCTTCAATGGAGCACATATGGAAAGAAGCTGTAAATGAAGCAAGGGGAACAACTGCTAAGcattttgatgaagaaaataaaagacttATTGCTGCAAACCAGAAGCTTGAGCAACAAATTAAAGCCATGAAGTCGGAGGAGAAATCAGAGGGTATAATGTCCATGGTTTCACAAGCGATAAAAAGAGGGGCCGGTGCACCTCCAGCACAAGATACAAAGGCAGAGAATAAAGATGACGAGCTTTCTGACACTTTGAAACAGGCACAAGAAAGTGTAAAGGCTTGGCGATCAATAGTTTTGCCCCTCGAAGAGGAAATACAGGCATTGAAATATAAGCTTAAAGATGCCAACCAGAggcttaaaatatttgaagcaaagGCTGCTAAAACCGCAATAGAAGGTGAAACCTCCACAGAGGCTTTAGTCAGTAAAGTACAAGAGCTACAGACCTATTTAGATGCAGAGCGCTCCTCGCGGACCGATCTAGAGATGTTTGTTGCTGTATTAAATACCCAAAAAGGCGTACTTCAAGAAGACGCAGACAAATTAAGAAGCGAATTACATCATGTTTGCAGGCTGTTAGAGCAAGAAAAGACAGACCATAAGGACCTGAAAGAGACTTGGAGGAAAGCAAACGAGCAGTTTTTAGAACAACACATGGCCCTCTCTTGGGAAATCGAAAAGATGCGCGAGCTTCTAACACCAGCACAGAATGAGCGTCTCTCAAAGGAATACCGCCAAATGCAAGCCCGACCGGCGCATGCTGTAAAAACACCTACCGGACATTCCCAGGCGGCCGGGAATTCAAATGACGACCTCATTAACTTTGATGATAGCCCtaagaaagacaaaattttgaggCAGAGTAGTGTAGATCCAAACGACGTTCATCTTATTGAGAAGATACAATCTTCGACACCTTCAAGTAATGGAAGCGTTGATAGTCCTGATTCATCACCATCTAAAGTTTCAATGAATCGCTTTGGAAGCTTGGAAGAAGGGGAGGAATTACAGGAAGATATCGACGGAGTGAAGCAGGACAAAGAGCATATGATGAGAAAGTCTGCATCAAGCTCGGATATATCCAATGAAAAAGGCATACGTATTCCATCGCCGGCTGGCAAATCTTTGTCTCAAGGCGACGTCTCTGCAGTTATTTCTGCATCAGGGGAAGATGCTTGGGCAGTCATTTCATCCCCAACAGTAGCCGAATTAGAGAAGAAATTACATTTGAACGAGACTGGATGGAGTACAATGAAAGAGTCTTTGACAACACATCCAGCTTGTATGATGTGCCAAAACTACGAAAAGCAGTTGCAACGGTTGCAGAGAGAACATCTTGATTTAAAGGACAAAAAAGATGCATTAATGACTTTCGCAAAGAAGGAAAAGCTGGAATTACGTGCAGAGAAGGAAAAAGTTGACAAGCTGgaaaaaagtatttgtaaAGCCTCTGAAGATGCCCAAAATCAGATTCATCTACACGCCGAAAAGGAAAATGAGCAACAGAAAATCTTTGACGAAATCCAAAACGATTTCTTGTCGCTACAAGAAGATGTTCATTTCAAATTGCTACAACTTTCTGAAGATCGAGATAAAATGATGAGCGAGTTGGACTCACTGCGCGAAGAAAATGCAAATCTAAAAGCAATCCAGGAAACGTTAAGAGACGATCAACAACTCACAATGGCTTCAAAAAGTGAAGCTGATCCTCAAGTTGTCAAAGACAAGATGGAACAATTGCAACTCAATGCCACGATAAACGAGCAGCAGCTACGGAGTGAGATAATGTTCTTAAAAGACCGTGTAATGGCAGAGCAGTTCGATAAAGAAAGTACCGAGAAGATATTGCAGTCAGATCTGGACCAAGCTCGACAAGAAATAGCTATGCTAAAAGAGCAGCTTTCAATTCAAGACACCGGAAAACGAAAAGAGGTTGCTGAAGATGAAAACCAACCCTGACCACCTTAAAGAGTTGAAATTGACTGTATGCAAGACATTCCAGTATAGTGCTCAATGATAAATTATTACCTAAgtctattttctttaactaCGTTTGTAGATGGGGACAACAGGCTGTTTGTTGTCAATAAAGCTATTGTCTGTTAAATAGATGACATTTTACGCTTATTATTGCAGAATGGCTCAAACGATATCTTCACGACTATGATAACTAAGGGGAATGACAAAcgatcattttgttttatgtacATGTTTATTTGTTCGATTCATTATTTGAAAGACGACGACAAAGTAACTGAGGTGTAGTTGCAGACAGAGACTCGCAAAGgaacaaaatgatgaaatacAGCTTGTTATTTTCTAGctgtaaatgtaaaaattaaacGAAGCTTGGCTTTACACTGATCCTCCTTTTATGTATCTTATCTCTTTTTATGTCTTGATAACTGATAAATGATGCATAAAATCATATTCCAAAACTACTTTGTACCTCAAGTGGCGTTGGTTATAATCTGTTGACAGCTAGTAGTAAGTAGTGCAGTATGTATCAGCTGCATCGATTGATCTGATACCAGTTCGTTGGCTTAGCCTTCCTTTACTAAATCTATGAATTTGATTCCATTCATTATCCGCATAACATagtatttcaaattgattcgTGTTATCAAACCAAATATGAAATTGTAGAATCAGATACTAAAACCTGTCAGAgctacttttatttttatttcgttttagACAGATTTAGTAATGCTTTATATAGAATTTACTCTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09311 all species →	Rab5-bind	Rabaptin-like protein	Coiled-coil	Interproscan
PF03528 all species →	Rabaptin	Rabaptin	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003914 all species →	Family	Rabaptin	Interproscan
IPR015390 all species →	Domain	Rabaptin, GTPase-Rab5 binding domain	Interproscan
IPR018514 all species →	Domain	Rabaptin coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31179 all species →	RAB GTPASE-BINDING EFFECTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12480	RABEP1; Rab GTPase-binding effector protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.