Gene detail

Detailed information of XP_065055544.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1672:9780677...9789271
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065199472.1

AAGACTAAAAATGATTATATAAAAAGATTATTatgatgattttatttctaggTGCTTTAAtaaaaggaatttgaaaaactataaaatatcaataacactaagtattttcaaaaaatggagaagaaGAATGGGCCCGGGGAAGAAGATGCTTGATTGTCTGCCTTTTACAGATAGATCTGGTGAAACAATGAAATGACAATAGCCCGCTTGCAACCACACATTGAATGGAAAACAATCAAACAGCTTACAAATTATTACTTACAAAGTGGATATTTTACACTATTATAATATTACAATATTATTAAGTACAAAAACCATGAAAAACACTAATGCTACCCTGACTAAAGCATTTTACCAACAGACTTCTACATCAAATGGTTTCTCTGCTATTGATTGGGTGTTAAGGTTCCTCTACTAAGGCAAAGGGGATATTGTTAAATAAgttcttttatcaattaataGTGAATGGAACAATCAAACATCCATGGTTATAAGCCTAAAAGGTGTGTGTTATccatacaaatattttatgcctAACATTATAAAATGTCAACTGGTGTTGAGAAACAAATacttttgctacttttttatGACCTTATTGTGTCATTTAAATATACATAATAAGTACcttgatataaaaattatacacaacacaacaacaaattcatttatCTCAATTGGTAGTGCACACCAGGTTGGAAAGTTTGGATCCTTGGGGTGCACTTCAAAACTGTGGTGTGCAAATGTAAGAAGATTTGTGCGCAGAGCACATGAAATATCAGCATTTTAGTGACATATGGCGCACATTCTTGCTACAGTGAGTCAGAACAAGAGGTGCACATtatcattcttaaaatgaacaaatgtTTCTTATTCTGGATGTCAATGCTTTTAGAAATTGGAAAGAATTCTATCACTGCTTGTACTATTGTTACCATAGAAGAGCTGAATGCCCGTCCAAGCGATTTGGAGTCTGCGCAGTATCAATCTCAAGGTCATCGCCCTTCATCCTATCTTTGTGAATTTGAGCCCGTACAATGATTGAATCACAATTTTTGAACTAAATGAGAGCTCACGGAACATGATAAGATGATATGACATTGTCAAAAAAAATCGTAAttggaccccccccccctcactaTTTCCATTGTAATTTTGGCGCatattaatttcaattttagtgCGCCAAAATTTTATCTGTCTCCTGACATTTAGTGCGCAGTTAATGAACTTTCCAACCTGAAGTGCACACAAAAATTCCCCACTGAACTTGCGAAACTGCTGTTGACACGTATCATAAATCAAACATGTTCAGTACAAGGACTGGGCTCTGGGAATTTTCGCTTGGTCAATAACGGCAGTCAGACTCGACTTCGTTGGCTTCGACTTAACATTTTCACTACCATGTCTTGGGACAGCAAGATTCTCAGAAgattttgcagtttctttaCTTGATACGGACTTCTTTTGTAAAGCCATTCTTTTTACCACATCAGATATTGTGTTTGGATTGACATTCAAGCGTAAAAGATCAACAATGATCTTAAAAACATCCTGACTCATTTTAACGCCACTTAGCTGGCATATTTCGAAGAGCTCGTCGTCAACAGATTTGTTTCTCGAGTACCCTGACGTTTTTGTTGCTTCAACTGTGACTTTGAATAAGTCAGGCTGTGACCTAGACTTCCTTTTCACGTCTGCGGCAGACTCTTTCGTTAAGAGCCTAGCTGCCGCCATATTTGTGTACTTGATACCACTGCTTGATACCTGTTCCATACCTGTGAAAGTTGCGCGGCAAGTAGCCTCGGAATAAACTGGAGGTTGAAAAAAGATGTTCTACGATACCAACGAAAATTGAGCGTTATATTGCCTAGTTAACTAACGAGTTTATTGgaaatgattcaaaaatgTCAGTAAGCCAggttgaatttgttttctgcTAAAAATCACACGCCAGTCTCTTTGCTGGCTGGAGAAATGGAGAAAGCACTCGTTCGTAAAAGAAAAGTCGAAAGTGATGCTGATGATGGTAGTATTAGTAATACAGCAAAAAGCGATACAAGTCTCGTTCAACTGACACCAACGTTTAAGGATAAAAAAACAGGACTAGTTAAAAAGCAGTATATCTTAGAAGAGGATGAATATATCGAGGCTGTGGACAAAATCATAGAGAGGGATTTTTTTCCAGATCTTCCAAGATTGCAGTTGCAGACAGAGTATGTAGATGCATTGAATTCCAATGACATAGAAAAACTTAGAGCTATTGAATTGAAACTTGACAGAGGATTGTCTGTGAGAAGATTTAATGACAACACACCAAGCGTATTTGAGACTCCATCAATAGACCAGGCTAAAACACCATCTGGAAATACTGAAACACTAAAAACCCAACCAAGCAATATTGTTAATGTTACAGATAAAACACCAAATGTTTCCTTGGATAAATTTCTTGCCAAGCATACAAGTGAAGACAATGCTTCCTTTGAAAGAATTATGGAAGAATCAAAACTTAGGATAAGAGATAAATTTGCTTGGTTATTCAAGGCTGAGGGAAGTCAGGCCGATAAGCAGCATGCAAATCTAGCACTTCCTAGTTGTGAGGAACAAGCACAGAAATACCTTGATGACAAGCCATATAACCTTGATTCATGGACTTATCAATCAAGAAACGCCCTCATGTATGTACCAAAAGGTGTTGATTTGAGTtctgcagaaaaaattttgcagaaggggaagaaagaaagagagataaagcatgaaaatacaagATTCAATGCAGATCCTTTTCACTCCTTGGCTTGCAAAGCAGCTCTTACAGAAGCAGCAAGTGTCAATGCGAACATCAAGAAACAAGTAGGGAAAGTTGGAGTAGATGGTTCCTTAGAAGCTGCCTCAGTAACTCCAACAGTTAAAGGTTATGGTTTTGTCGCTACACCGTCACCAGCACCAGGTGCAGATTCTTCCCCTTTTATGACATGGGGAGAAATTGAGGGAACACCAATGCGCCTGGATGCAACTCCTGGTTCAACATCTGGGCCAACATTCAAGATACCAGAGCCCCCTAGGAGAGAGCAGCTAGGGCACCAGTTGGTTGAAAAGATGAGCAAAGAACACCGCAATAAAAGAAGAGAGGCTATTGCTAGAGCAGCTGCCTCAATAGGGAAATCACCTGGAAGATCATCTACAGACCGCATAACTCAGCTATCTCCTGCAGCACAAAGACTAGTTCAAGCCAATGCAAGATTGACAGGTGATTCAGCTTTGAGAAGCAGTTACTCTCCATCTCCAAGGAGACGTGCCACAACACCCACAACACCAAATATACAGAAGACTACCCCAAATGTTAGATCTTCTAGGTCAAGACTTTCAGCAGCTAACAAGACAGACGTTTCTTTAACTGATAACTTACTACAACTTCCAAAAAcctaatttttgcaagatagtttcatttgaaaaagcttaGTAGCATAGTTGCAATGAGACCGTCACACCTTTGTATTCAAGAAGACATTGCAATTTGGCCCTCACTTTCCAAGGAAGCTTCTAAAGCTTTTACTGATATTGCAAACAAAAGggacaaaaatagaaatattacaaaaacaacACTATATTGGTGAAATAGGAATGTTGGAGCACATttgaggggggagggggggattCTAGACAAGTTGGCAAACTTTTATTGAAGATTGCAACTATCTACCTTAATTGTAAAACCTCAAAAAGCATACTTCAGCACCACCCCTCTAGCCACCCGGCTCCAGCATGCCTGATACAGGAAAGAATCATGTTGATGGTGTTTGTTCATTCAGAAGCACTTTGGATAAACCAAAGCATGATTTTGCTTAACTTTCAGTTGCATTATTCTCGAGTATATCAAAACATTAACTTCAAATATACATTCAAAAAGGGATGGACTAACTAACAGTAAGATGTATTGCAGTGTATATTTATTTGTAGATATCAATTTAAACGCATCTGGAAATacaaattgtattttatctgTTGGTATATAAAACAAGATTTTGgcattttgtcattttttgataagcTGAGTAGCAAGTAAAGAAATAGATACATGTTCACGTTTTTTACActtttgccaattattttaacatttatttttaccatttcatttaaaatacgtttttagtaaaaattcAGAAGCACCTGTAAgcataattattattttttacttaacttttttgtatttaaagctttgaaataCTGTTATAAACAGTCTTCATGTGAAAACAAGAGTATACATCTAGAAAAACCGagcaaaacaataataaaacaaaattcatttaaacCTTTTACTTTTATCTTAAACTTTTCTAATAGGTTAAGTTGGgtaaaagctttaaaatcttAATAATTTTAGGTAATCACTGAATGgaaaataaaccaaatttAGGATTTTTATGGCTCTGAAAGCTaatattaattaaaatttacaaatgatctttaaaaatttttactctCAGCACTCAAAGGTATAAGCAGTGCAAGAACCTCCTGcttaattacaaaataatgtttagGGTTATCTGGTGATGTCTTGTTTTCAAAGCTATTGACATATATattcatttagaaatttatttagaaatcATATATATCGACTcatatatttagaaatttaaagcTTTGACCTCAAAGCAATGTAGCAAATTTATGATCAGAtttctaacaaaacttttaattttaatattgttaaaatttctttgaccCCTCATCACAAAGCTTTAAACATAAAGGACATTTTCATACATTTCTAGtcattattttattctttgttaatAAATAGCATAAATtgtgtatcaattttattttaaattcaaaatataaccACTTTCGGATGGTCAACTACATGTTATAATATTATGTCCAGCCCATTTAAATTCATGTTTCATCTCTGATATGCAGGGTGAATCGTATTACTCAGCAACTTCAACttgacttttttaattctaaaatgATCAATTTAAGTAATTTAGTAACTAGTAATCACAATTAAAACtaccttttctttgaaaaggcAGGTAATGTCAACACATATTTGTGATATGAATTTGCCTTCTGGTAAAAACACAATCGACAGATTGCTTTGGCTTTGCAATCCAGCCAATTAGGCATACATCAAACAGATTTTAATTCTGTAGACAAGTATAAATcgataataaattttgaaaaaacaaacatttcacaacatactactaaaagttttttcgtctgacactcctcagagtataaaacgtcagaataacggtccgaaagaacacgatggaaaatatatacccagttgtcgatcgaaataggccaatcaggaGAAAatgaactccttctgtctatTTCGTTTATGGCGGcttttatgtttgtttgtaGATCAgttctaaaactgctagatgaaaagacGACCGGCATTTCCACATTAAAAGTTGCACGGTTATCTGGgttatctaaaaaatgttgaccgatggcagtatcacttgttttaacagtgtttctagacctacaagatcgaggaggctgttcaCTTTGGGGGCAGTTTTGCTTATTATGTTGGAATAAGTGTTGTTTGATCCTATCCTCAATATTTGagttgtgcgtcctacgtagccagaatcacactggcacgtaaattcattaataacggaacttttttggttggtaggaacgcaatccttttgaatggatggaagggctctccaGTACTGTTTACAAAACGAGGATTGACAGcgaagaaacattttgtgatggcCTGTTTAATCTGACTTTCAAATCGCAAGGGAGTGTCACCAATCCAAGGTAGTTTAAGATAAACTGGGCTCTTGGACCGAACTTTTGgacagccgaaaaacttgcgatctttTTCCGTGTAAGAAGAAATTACATCTTCTAgatagccgttgtccagaAAGGTCGTTTAAAGTTTGTTCAGCTCTGCGTGGAGTTTAGTTTCAGAGCAGATCAAAAGTATCCACTAAAGTTTTGACGAGGTTGACTAAATTGATACTTACTGAGGAAATAATTATATCAAATGAATACGAAGTTTTTCAATTGGCAAATACAGTTAAACATACTTTCTGGTACATGATTAAAACATAATGTGTTTATTCTCACTAAGTTACGATATATTTTGCaagtgaaaaaatattctgctGTCTTAACTTTCCCAGATTTTCCTTTCCCATACTAGTCTATTCCTGAATTATTACTGAAgtatcatatttttcatagttGTTGgttatatttgaaagaaattctGTTGTTaatcaaaaaatctgaaaataaattttattgtgTGCTTGAAATTTTAGCCAAGGAAAAGCgccttatttcaaaatgattttcccTGATTTCTATTCACACCTTAGCCTTTTTCTGGTAGGCTAGATCCCCTAAGAACAACGAAAAAGACGCAACAGTGTATTGCAGGGTGGAGAACACATAGTAAATacgaggatggctcagttgagggtccgtggttcgagtccctgacatgaccaaactttcacccagagtggggagagtcgccagctctctgtaattccaggcgtaggaatcacgaggtgtggtcacatcgagaggaagtaccaggacactgctcgataagcatagcttctcagtgtcctaaagTCTCCCTCGGATGCTAcgtagcaacaaatacaatacaaaaacaaacaaaaacaactgTACTATAGTAATAACAAAGAGGAAATGATATGGAAAGGAATCAGGCAacagttttaagaaaatctaaagcaaaCTGAAAAGACTCTGAACAATAGGAATTTTAATGCTGGAACAAAAGCCTGGAATTATGTTAACTGCCAGTCACATTTACAtatgtaaaatattatttatggAAATAATAAGCTACAGAGAATTAACACTCAAGATGAACTAGCAGTCTATTAACATATTAATATAAAGCCTGACTATAACATTTTCATCTTAGCATGTTCAAAATTGCCCTGCAAAAACGTATGAGTTGATTCACAGATAAACTTGGTGTCAAGCAAAACATTAGATGACAAATCAATCAATGGAGCAATGATTCATCAATCATGACAATTTCTGCATCACATAGGTCTCAAAAAAATTCCCCTTCATTGTTgatgaatatttaaaaatgattgttagtgaatcaatttctt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007078 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09751 all species →	Es2	Nuclear protein Es2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019148 all species →	Family	Nuclear protein DGCR14/ESS-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12940 all species →	ES-2 PROTEIN - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13118	DGCR14; protein DGCR14	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.