Gene detail

Detailed information of XP_065055587.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:886609...910920
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135684112

ATGGTTGAATCTTTAAACAACCAGGAGCAAGAGCTTCTTCAGAGCTATGACAGTCGACTCTTTGGTTTCATGAGATGGTTTGAGCCCATTTGTGAGGGTGCTCAGAGAGTTAATCACGGTAATTTATTGCAAAAAGGAATTCAGTTCTTGGAAAATAAACTTAAAGCTGAAGGAAAGCAAGCAGACACAAGAATTTATTGCCAGCTTGGCCATTTTCACCTCCTCTTAGAAGATTTTAACAAAGCTATGTCTGCATACCAGCGTTTTTTCAATTTACATGAAGAGTATTTCAAGGATGCACCGTTTTTGTATGGTTTAGGAATAGTATATTTTCACTTTAATGCATATCAGTGGGCAATTAAAGCATTTCAGCAATTGTTATATATAGATCCAAGTTTTAACAGAGCAAACGAAGTCCATTTGAGACTTGGTCTTATGTTCAAGTCTATGGCAAATTATGATGCTAGTTTGAAGCATTTTCAACTTGCGCTGCTAGATTCAAATCCTTGTTCTCTTTCAAAAGTTGAGATTCAGTTTCATATAGCTCATTTATTTGAGATGCAGTCAAAATTTGATTTGGCAAAAGAAGCCTACCAAGCCATTATTAGTGCAAATGGGATGCCTCCTCATATACAGTCAGTTGCTTGGAGGCAGCTAGGATGGATGTTTCATTCGCACGAACAATTAGGAGAGAAAAATCAGAGGACGAAGGAGGCTGTAGACTGCCTGCAGAAGTCACTAGAACTAGATCCTTCCAGTGGATCATCCTGGTATTTTCTAGGGAGATGTTATTCACAACTTGGAAGAGTACACGAGGCCTTCACTGCGTACAGGCATGCAATAGACAAAGCAGAGGCTAATGCTGATACATGGTGTTCCATTGGAGTGCTATATCAACAGCAAAACCAGCCAATGGATGCCTTGCAAGCTTATATCTGTGCTGTTCAATTAGACAACTCGCATTCGGCCGCCTGGACGGACCTAGGGGTGCTATATGAATCGGGAAACCAAATCCAAGATGCCATCATCTGTTATACAAATGCTTTGAGATCATGCGGAACTGCAAATCCGAGCTTAGAGAGTCGAATGAGGTATTTGCAGAGTCAGATGACAAGTCACCCGGCCCCCGATGCCGCCAAAAAGAGTCTACCAAACATTGAAGAAGCTTGGAAGTTGCCAATACCAGCTGAACTGACAACCAGAACTGTCCGCCTTGTTCAACAGGCGCGTATCAATCAACAAGCAGCTTTAAGCCTTCAAAACCAAAGCCAAACTCAGCCGCCTGAAGGAGAAAACAAACAAGCTCAAGCCACCAGCATGGCCTCTGAAATGGCACCGAGGCTGAATCCACAGCAGCCCGCTTTTGCGGCTGGGCAGCCAATTGCCTCGCTACCACATGACATGAACTCAGCAATCCCCCTTGGGCATGGCCAGACAAATTTGAATGGCTCGCAAAAACTCAATGAAAAAGAAAAACTTAGCAAGTCACTTCCACTCGAATCTGTCAATTTAAATGAAACGTGGAATAAATCGTCACAATCACATTTAGCCCATCAAAATAACAATCCAATTTTTGCCTCACATCTTACAAGAAATGGAGGAGAGCAGACCCTCAATGCTGTCAACGGTCTAGGGAGCCAATCAGAGTTCAGCAACTATCCAACTACATCATCAATGGTGTCTCCACTACTCTCTCCTAAAGTGTCCCATATCAATGGAGGTGTCCCGAGCTATCAGCAGCCTCTGTCTATAACGAACCCTTCCAACGTGCTTTTGTCACCTGGCGTGGTCTCGCCCAATCTGTTATCGCCTCATCAGCCACTGCTGTCACCAAATACTCCTAAAATTGGAGCAAACACTAATGGCTTCAAAATACCAAAGATATCCCTGCTTTTCAATCCAAAGGAGGTACCAAGGGCTCCCCCTCCACCACAGCCACAGTTACCAATTGAAAAGCTTTCACCACCAACACCCAGCATAACCGTCGAGTCAAGGAAAGATGCTATGTCAGTTGCATTGAAAAGATTTTGCATGGACCCCAACAATCCAGTGACTGTTATCAGAGGCATTTGTGAAGCTTTAAAAATAGATTTGAGCTTATTCACTACAAAGAGACTTGTGGACGACCACCCAGATTTCACCGTGGAAATCAGACATCAGCGACAGCAAGCACCTGACGAGAACTGGGATGCTGAAGGAACTAAGCAAGTTTGGTACTGTGAAAGTAGCAGGTCTTCGACTACAATTGCTAAATATGCAAAATACCAAGCCAAGTCTTTCAAAGAACATTACAATGAAAACAAAGACGGAGCAAACTTAACAACAGACAGTGATTCTTCTTCGGGCGACCGAAAGTTGAAGAAATCTGGTAACTTTACTATGATTAAATTCGGCACTAATGTGGACCTCTCGGACACTAAAAAATGGAAACCACAATTGGCAGAACTTGCAAAGCTTCCCCCTTTCATGAAGGTTGTTAGCGGATGCAACATGTTAAGCCACGTGGGACATAATGTTCTCGGAATGAACACAGTACAGCTTTACATGAAAATTCCCGGATGTCGAACCCCAGGCCATCAGGAGAATAACAATTTCTGTGCGCTTAACATTAACATTGGACCAGGTGACTGCGAGTGGTTTTGCACTCCTAAAGAGTATTGGGGAGTTGTCCATAATCTCTGTGAAAAGCATAATTTAAACTTCTTAGTAGGATCGTGGTGGCCTAAGCTAGAAGAATTATACGAGGAACGAGTACCTGTGTACAGGTTCATTCAGAAACCCGGAGAACTTGTCTGGCTAAATGGCGGCAATGTACATTGGGTGCAAGCCTTGGGCTGGTGCAACAATATTGCTTGGAATGTCGGTCCACTAACGGAACACCAGTTTAACTTGTCAGTTGATCGTTATGAATGGAACAAATTACAAGCCGTTAAGTCAATCGTCCCGATGTTGAATCTCACTTGGAACCTTGCGCGTAATGTCAAACTGAGCGAGCCCAAACTGGTGGAGCATATAAAATCGCTGCTAGAGAGATCACTCAGTTATTGCGAAGTTACGATAGAAATTTTAAAGCAATCAGGAATCGAAATTGTGTTTCATGGTCGAGAAAAGAACGAGGCGGCACATTATTGCTCTACTTGCGAGGTTGAAGTGTTCAATCTGCTGTTTGTGAAAGAAATAAACCGAAAATTAATGGTTCATTGTCAAGACTGCGCAAGAAAAACAAGTGCGACGTTAGACGGTTTCAAAGTTTTGAATCAGTTCACGTTAGAGGAATTGAGAGAGGTTTTCGCCAATTTTTGCAACAATTCAATGCAGAGTCAGCATCTCGCCCCGCAGCCTATTTCATCTTAG

Transcript

rna-XM_065199515.1

AGTTGGCTTGCTTTTGTGTACACTTGATTGTAGATCGAGCGTGCCGGACAAAGAAAATGGCTGCCTAATGCTTATGTATCCAAGTGTTTGCCGCTTGTATTTGACAGTTACGAAGAAAGCTGCATTCATATTTCAGGTGACAGATGGGAAAAATATACAGGAACACTCATAGCGTTCTTAAGGGGACTTGGACTCTGCTACAGTGGAAGTCATGgTTGAATCTTTAAACAACCAGGAGCAAGAGCTTCTTCAGAGCTATGACAGTCGACTCTTTGGTTTCATGAGATGGTTTGAGCCCATTTGTGAGGGTGCTCAGAGAGTTAATCACGgtaatttattgcaaaaaGGAATTCAGTTCTTGGAAAATAAACTTAAAGCTGAAGGAAAGCAAGCAGACACAAGAATTTATTGCCAGCTTGGCCATTTTCACCTCCTCTTAGAAGATTTTAACAAAGCTATGTCTGCATACCAGcgttttttcaatttacatGAAGAGTATTTCAAGGATGCACCGTTTTTGTATGGTTTAGGAATAGtatattttcactttaatGCATATCAGTGGGCAATTAAAGCATTTCAGCAATTGTTATATATAGATCCAAGTTTTAACAGAGCAAACGAAGTCCATTTGAGACTTGGTCTTATGTTCAAGTCTATGGCAAATTATGATGCTAGTTTGAAGCATTTTCAACTTGCGCTGCTAGATTCAAATCCTTGTTCtctttcaaaagttgagattcagtttcatataGCTCATTTATTTGAGATGcagtcaaaatttgatttggcAAAAGAAGCCTACCAAGCCATTATTAGTGCAAATGGGATGCCTCCTCATATACAGTCAGTTGCTTGGAGGCAGCTAGGATGGATGTTTCATTCGCACGAACAATTAGGAGAGAAAAATCAGAGGACGAAGGAGGCTGTAGACTGCCTGCAGAAGTCACTAGAACTAGATCCTTCCAGTGGATCATCCTGGTATTTTCTAGGGAGATGTTATTCACAACTTGGAAGAGTACACGAGGCCTTCACTGCGTACAGGCATGCAATAGACAAAGCAGAGGCTAATGCTGATACATGGTGTTCCATTGGAGTGCTATATCAACAGCAAAACCAGCCAATGGATGCCTTGCAAGCTTATATCTGTGCTGTTCAATTAGACAACTCGCATTCGGCCGCCTGGACGGACCTAGGGGTGCTATATGAATCGGGAAACCAAATCCAAGATGCCATCATCTGTTATACAAATGCTTTGAGATCATGCGGAACTGCAAATCCGAGCTTAGAGAGTCGAATGAGGTATTTGCAGAGTCAGATGACAAGTCACCCGGCCCCCGATGCCGCCAAAAAGAGTCTACCAAACATTGAAGAAGCTTGGAAGTTGCCAATACCAGCTGAACTGACAACCAGAACTGTCCGCCTTGTTCAACAGGCGCGTATCAATCAACAAGCAGCTTTAAGCCTTCAAAACCAAAGCCAAACTCAGCCGCCTGAAGGAGAAAACAAACAAGCTCAAGCCACCAGCATGGCCTCTGAAATGGCACCGAGGCTGAATCCACAGCAGCCCGCTTTTGCGGCTGGGCAGCCAATTGCCTCGCTACCACATGACATGAACTCAGCAATCCCCCTTGGGCATGGCCAGACAAATTTGAATGGCTCGCAAAAActcaatgaaaaagaaaaacttagcAAGTCACTTCCACTCGAATCtgtcaatttaaatgaaacgTGGAATAAATCGTCACAATCACATTTAgcccatcaaaataacaatccAATTTTTGCCTCACATCTTACAAGAAATGGAGGAGAGCAGACCCTCAATGCTGTCAACGGTCTAGGGAGCCAATCAGAGTTCAGCAACTATCCAACTACATCATCAATGGTGTCTCCACTACTCTCTCCTAAAGTGTCCCATATCAATGGAGGTGTCCCGAGCTATCAGCAGCCTCTGTCTATAACGAACCCTTCCAACGTGCTTTTGTCACCTGGCGTGGTCTCGCCCAATCTGTTATCGCCTCATCAGCCACTGCTGTCACCAAATACTCCTAAAATTGGAGCAAACACTAATGGCTTCAAAATACCAAAGATATCCCTGCTTTTCAATCCAAAGGAGGTACCAAGGGCTCCCCCTCCACCACAGCCACAGTTACCAATTGAAAAGCTTTCACCACCAACACCCAGCATAACCGTCGAGTCAAGGAAAGATGCTATGTCAGTTgcattgaaaagattttgcatGGACCCCAACAATCCAGTGACTGTTATCAGAGGCATTTGTGAAGCTTTAAAAATAGATTTGAGCTTATTCACTACAAAGAGACTTGTGGACGACCACCCAGATTTCACCGTGGAAATCAGACATCAGCGACAGCAAGCACCTGACGAGAACTGGGATGCTGAAGGAACTAAGCAAGTTTGGTACTGTGAAAGTAGCAGGTCTTCGACTACAATtgctaaatatgcaaaatacCAAGCCAAGTCTTTCAAAGAACATTACAATGAAAACAAAGACGGAGCAAACTTAACAACAGACAGTGATTCTTCTTCGGGCGACCgaaagttgaagaaatctgGTAACTTTACTATGATTAAATTCGGCACTAATGTGGACCTCTCGGACACTAAAAAATGGAAACCACAATTGGCAGAACTTGCAAAGCTTCCCCCTTTCATGAAGGTTGTTAGCGGATGCAACATGTTAAGCCACGTGGGACATAATGTTCTCGGAATGAACACAGTACAGCTTTACATGAAAATTCCCGGATGTCGAACCCCAGGCCATCAGGAGAATAACAATTTCTGTGCGCTTAACATTAACATTGGACCAGGTGACTGCGAGTGGTTTTGCACTCCTAAAGAGTATTGGGGAGTTGTCCATAATCTCTGTGAAAAGCATAATTTAAACTTCTTAGTAGGATCGTGGTGGCCTAAGCTAGAAGAATTATACGAGGAACGAGTACCTGTGTACAGGTTCATTCAGAAACCCGGAGAACTTGTCTGGCTAAATGGCGGCAATGTACATTGGGTGCAAGCCTTGGGCTGGTGCAACAATATTGCTTGGAATGTCGGTCCACTAACGGaacacCAGTTTAACTTGTCAGTTGATCGTTATGAATGGAACAAATTACAAGcCGTTAAGTCAATCGTCCCGATGTTGAATCTCACTTGGAACCTTGCGCGTAATGTCAAACTGAGCGAGCCCAAACTGGTGGAGCATATAAAATCGCTGCTAGAGAGATCACTCAGTTATTGCGAAGTTACgatagaaattttaaagcaatcaGGAATCGAAATTGTGTTTCATGGTCGAGAAAAGAACGAGGCGGCACATTATTGCTCTACTTGCGAGGTTGAAGTGTTCAATCTGCTGTTTGTGAAAGAAATAAACCGAAAATTAATGGTTCATTGTCAAGACTGCGCAAGAAAAACAAGTGCGACGTTAGACggtttcaaagttttgaatcaGttcACGTTAGAGGAATTGAGAGAGGTTTTCgccaatttttgcaacaattcaATGCAGAGTCAGCATCTCGCCCCGCAGCCTATTTCATCTTAGCGACCAAAAGGTTTAAGTAAacgaaaacatttcaattctAACTTTATGGACTGATAAAAACGCTTTTAAAGAAGTATTCTTCAACGGATGCCGTAATTTGCTACGATTTGGATAGCTTTTGACAATTCAACTACgctttttatctttgtataTTTCAATGTAAATAAAGATCATGCGATTGTCAGTTGACATTGGTTGCTGCTAGGACCACATTAACCCCTTTTGTGGCTGTAGGCCCAATGTTGGAGGTTCCCAGAActtctctttttcaattaCCAGATAAAGTATATATCGGAAGATGTTCAAATGTTTAATCACTTATAACTAGGCAACCATGTTCTTCAGATCTCATTCTTAAGGCAAGACTTGTAGGACCTTGTGTTGACACTTTTTTCTGTGTTGTATTGAAGCATGCCTGTACAGATGGTTCATGCTCTGAGTTTGTTTGTAGTTCCTTCCTGGCAGATTTGCATTGTTCTACGCCCAAGGGCTCTTTGAACACATCTTTTGGCTCCTATGGCCTGCAAGTCGTTTACAAATGATACTTATAAACTAGTGTCCGTTGGACTTCTCCTCTGCCACACTGCAGTTTGTTATTTAGTGTCTGGTcgatatattttatttcatttagcAACCAATGACAACTTTCAACAACttaatgtttatgaataaatttcaGGTCAGTGCTTAAAGGTTTTGTGGATATTTTTTGTGTCAGTTGCGTAATATGATTATCATTTAAATGTTGTGAACTTAAGCCATGTTCAAACGCGCAAAACATTCCAGCCCCCATTGCCAGATGGTGCGGAGAAGCTAGTTCCATGTCAGTTAATTAATATAGATTTGTCTGACAAATCCTGactgcttttttaaaaatgtttttcgatTTCCTACATTCCTTTACGAGCATCTaaacttttcatcttttttaaatggatATCCACCCTCCCGAATCCATGAATGGCCTGCATGAATTAATTAACATCACTTACTATGCTCCAATGGCGATGCGCTTGTTCTTGTATCTGATTTCCAAAATCGCTGTTTGAACCTGGCTTTCTTTCCTTAGTTCTAATTCCTAATGATGCTCTTCGTGTTCTTTTGATGATTAATGCGAACTCATATGCACATTTTGGGTCTCCCCCTTCCAATTTTTACCTCTGATGAATAATCAGAATGGTAGTCTCACAgtataatgaaatttaaaccAACAGTTTAAGCATAACTTGAATAACAGCAAATGTGTTCGACTATGGAAGTGCGATGTGATTGATAAATGAGTGTGAGCTCTGCCTTCCTGTTTGTTTCTTCATGGGAACAAAGGGAATATTTATAAACTATTTGTATCAATGCGAGCAAAGAAGACATTAAGAACAAACGGGTATGATCAGAACACCTACCCTTATTTAGAAATGAGGGAAGGTAtttctgttctgttttgttattaatttggGCTGTTTCGTtttattgaagcaaaattCTTATAGTATTTAAGGCGATTTCTGTCAAAACAATTGCAAAGTATGTATTTGAAGAGTTTTTAATTTGGTTCATATTAATCTTCATTCACTCAAGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21326 all species →	KDM6_GATAL	KDM6, GATA-like	Domain	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF21322 all species →	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR048560 all species →	Domain	Lysine-specific demethylase 6A/B-like, GATA-like	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR051630 all species →	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan
IPR046941 all species →	Homologous_superfamily	Lysine-specific demethylase 6, GATA-like domain superfamily	Interproscan
IPR048562 all species →	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666 all species →	Cellular Component	MLL3/4 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065055587.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.