Gene detail

Detailed information of XP_065055752.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:10884035...10913998
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065199680.1

GTGATTAACCAAATTTCGCAAGGCATGTCGCGGGAAGAGAACATCACATTGGGAAGGATTTGAAGTGAGATAGATTGGATAAAATATCTTCGACGCTGTTGCGTAGAAAAGTAAAACAAGCATGAGTGGAAGAACACAGGACGTTCGCAAGaagttttataagaataaagaCAAGGATACGGAGtCTTTAAGGCAGAGAAGAAATGAAGTGTCTGTGGTTCTAAGAAAGGAAAAGAGAGATGAagctttacaaaaaaagagaCTTGCTCCATCACAAGCAGAAGAtgataaagatgaaaagatgCAGAATTACTCACTTGAAAGCATAGTTGCGACACTGCTTCAAGgacaaaatgaaaagATGGGAGGAGAATTTGAGTCTGCAAAACGGCTAGGAGCAGTCCAGGCTGCCAGAAAACTACTATCAAGGGACAGGAACCCACCAATCAATGATCTCATTGAGTCTGGTATTCTTCCCATCCTTGTCGAATGTCTTCAGTGTGATCAGAATCCACAGCTGCAGTTTGAAGCAGCTTGGGCACTGACAAACATCGCATCTGGAACTTCACAGCAGACCCAAGCTGTTGTGCAAGCAGGTGCTGTTCCTCATTTCATGCGCCTCCTCAGCTCACAACATTCAAACGTTTGCGAGCAGGCTGTCTGGGCCTTGGGAAACATTATCGGCGATGGTCCTGGTCTGCGTGATTTCGTAATCAGCCATGGCGTCGTTGGCCCATTGCTCAAATTCATTGATCAAAATACTCCAATTTCTTTCCTTCGAAATGTCACGTGGGTCATCGTGAACCTCTGTCGAAACAAGGAGCCTCCACCTCAAATGGAGACAATCTCGCGGTTGCTCCCGGCATTGGCATTCCTGATTTTCCACACAGACACTGATATATTGGTGGACAGTGTCTGGGCACTTTCGTATTTGACCGACTGCGGAAACAGTCACATACAGGCAGTGATTCAAGCTGGTGTTGTCCCGGTTCTAGTTCGTTTCTTAAGTCATACCGAAATAAAACTTCAAACGGCAGCGCTGAGGGCCGTTGGCAACATTGTCACGGGCACAGATGAACAGACACAGGTTGTCCTTGACAACGGTGCACTTGAACATTTTCCTGCTCTACTACAGCACCCAAAggagaaaataaagaaagaggCGGTTTGGTTCTTATCGAATATAACAGCGGGTAATCAAGATCAAGTGCAGCTAGTGATAGAGGCTGCCTTGATACCGTTGATAATAAAAGCTCTTGAGGTTTGTGAATTTGCAACGCAAAAGGAGGCTGCCTGGGCGATTAGCAATCTGACAGTCAGTGGCACGCCTGCGCAGGTTAATTATATGGTTAGTTGTGGTGCCTTGCCCCCGTTCTGCAAGCTTTTACAAGTAAAGGATACTCAGGTTGTTCAAGTTGTTCTCGACGGTATTGGTAACATATTAAAGATGGCTGGTGATGACGTAGACAAGATTACATTAATGATCGAAGAATGTGGAGGCTTAGATCTAATCGAGAAACTTCAAGAACATGAGAATCCTGATATTTACAAGCTGTCTTACGAGATAATCGAGCATTATTTTGCTGATggtGAAACCGAGGATGCTTCGCTTGCCCCTGCGGAGGTAGACGGCGAGTTTCAGTTCGAGGCTAAACAGGACATGCCTGTAGATGGCTTCAAATTATGAAATAGCTTACAGACATTAGACGCACATTGACGACGTATGACGGAGCTGATTGTACGATTTGTCAAGACAGTTGATGTTCATTTACAAATCGTACTTAGATGTTCTAGAGCCTCTGCGTAGCGATGTCTTGGCAGTCATACGCGCAGGAACAGCAGGAACAACAATAGCAACTACCGACGAATCAGGACATAACACACTGCAAAAGTAGGAAGATACCTGAGAGTGCGTGTGATGCTGAAGTGGAGAACCCCCGTCCGTCCCCTTACAAAGTGGACTATCGCCGTGCAGGACGGATCAACAACCTTCACCCAAGCTGAAACTGAACATTTATTTAGTGTTTTAATGAATCTTATCCAACAGAAATGACATCATCTAATCAAGGGCTTTCAACCTGCGAATGTAGATAGAGCAAAATTATTCTAGTTATATCTTATGAGAGAACCTTGCAAATCCTGCCTTTTTGTAGATATCGGCATATATATGCCATACGCAGAGAGCCATGAATGAGATGACGTCATGACTGTGTTTATGGGTGGAAAGTTTGAATGAGAATGTGGAAGTTTAAGACTTAATTAGATTTGTAAATTACGGACagtttttacatattttgacaaaacaagGACAGTaacgaaaattattttagtaatatgttttgattttgtaagcaattttaatttggtaaatttaaacttttaaatctGTGTTCTTTTCGTTGATGCTAATTTTacgttttattattttgcttgAGTAGATTTATCGCAAATGGAATTGCTTGCCACGtaaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001131 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16186 all species →	Arm_3	Atypical Arm repeat	Repeat	Interproscan
PF01749 all species →	IBB	Importin beta binding domain	Repeat	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036975 all species →	Homologous_superfamily	Importin-alpha, importin-beta-binding domain superfamily	Interproscan
IPR032413 all species →	Repeat	Atypical Arm repeat	Interproscan
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23316 all species →	IMPORTIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065055752.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.