Gene detail

Detailed information of XP_065055857.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:1940619...1946221
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01127 all species →	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014314 all species →	Family	Succinate dehydrogenase, cytochrome b556 subunit	Interproscan
IPR018495 all species →	Conserved_site	Succinate dehydrogenase, cytochrome b subunit, conserved site	Interproscan
IPR034804 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	Interproscan
IPR000701 all species →	Family	Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10978 all species →	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005749 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006121 all species →	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0045281 all species →	Cellular Component	obsolete succinate dehydrogenase complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00236	SDHC, SDH3; succinate dehydrogenase (ubiquinone) cytochrome b560 subunit	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.