Gene detail

Detailed information of XP_065055972.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:10796303...10817647
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135684365

ATGAATCGTTCGCATGATGAAAGGCAGAGTTTACGAGGAGAAGGCGTGATGAACAGTGTAAGCAATCGTTCTATGAACCCGGTTATGTCAGTTGCAAGCCTAGAAAAAGACAAACACGAGAGTTCCATTGGTCCAAAGATGAATTCAGGGAATGAGCACTCGGGCTACAGGGCTGTGGATCTGATCAAACCAAGCAAGTCTTTAAGCAATGCAATGTCTCATGTGTCTGTTGGGTCTGCACCACTGCCTCCAATGCCGCCATTGCAAGCACCGTTACTTACCAGTATTTTGCCAGGTCCTGGTCACCCAATTATGCCACCAGGACTCCCACATGGAACATTGGTTCATGGAAGTGCGCTCCCTGCACAAATACCCTTGATGGGCAGAGCAGCTGCTGCAGTTGCCCCACCAAGAGCCAGCATTGCTGTTCCCCCACTGAGAGCAACAACAATGCCTCCTCTAAAGTCAGCTAGTAATGCAAGTCAAATATCACAGAATATCAAGATTCCAGTACCTGGTAAAGGCACCAGCATCTTTTCTCCTGTTGTCCCATCCAACAGACTTCAACCATCATCATCTGCACAGTCATCTGGACAAATTATAAGTCGATCTATTGAGCATACCAAAGGTTTAGATTCAAAGACCAGTCATGTACAGGCAGATGTACACCAGATGCACTCTAATTCTAGCTCAGGCAATGCTGTAGCTGCCGGCACAGCAACGGTTCAGGTTATTGCATCTGGAACAGCTCCTCTGGGATCTGCTCAATCCAGCAAATCATTCTCTGTCATACCAAATCAAAATATACTCAAAATCGGCTCACAGAGCTTGCAGTATAATCAAACATCAGCAACATCAAATTCCATTGCAGCTGTCACAACCTACAGGGTTGCTCCTCCACCAAACAACATTGCTTTCAGTAAAATCATACCACAGCCAATATTGATTCCATCAACCACATCAGGGACACCAAGCACCACAAAGCCGGACTCCCAGGATCATCCAAAAAGCAACACATTGTCAAGCTCAAGCCACGGCCGCCTCTCGCCAACCACAACTTCTTCTCACCATTCTGCTTTTACTGCGCATCATCACTATAATTCTGGAATACCTGGATCGTCAAACCAGCCACATATGCCATATTCATCAAATGAAAATAAGAACGACAAACTGAAGCCTGGCAATCCGTCGCTACAATATGCCATTGGATCATACTTCCCAATCGACACTGGATTCTCACATCCAATTGGAGTTCACAGATTTCCTTCTGGGACACCGTTCCACTCGTATGTACGAACTCCGTCTGGCTCGACTTCCAGCTATGGTTCATTTCCCATGTTTGTTGAGGGGACTCGTGGTTTTGCTTCAGCTCCACTGCCAATCCCAGGGATGACACCGTCAGCAAGAGACTCACACCACCATTCAACATCAGGGGAATCCTCACCCGTAATGAACAGCTCATATTCAATCCACAACTTCCCGAACCTTCAGTCATCATCATACCATACGTCCGGACAACAAAGCAATGTCTCCTCCTCACGACCCGGACCCGGAATCCTACGCAAGCGCACAGCTGAAGGGTATCCAGTTCATGGCCTGGATAGAATCTCGAGCCCAACCAAGCAAGAACCTCGTATTGATCACAGACAGGAGCACTGGTCTGATTCGAGACCAAGTTCCGGATCCGGTAATGCACCTTCACGCCAGGAATCGCCGAGACTTTTATGTGATGAAAAGACAATATTCAGCGATAGCTTCACCTCTGTGGCAGAATCCAGTAGCTACATAAATAGTAGTATTTCTTCAATAACAACAAACGCAGAAATGAAAGTAGAGCCAGTAACCCCTCCAGTGTCTGCTCAGAACAGCAGTGTGAGTGTTTCTGGTGCGTTGATGCCGGCTGTTTCAACTGCATCTGTCCCGGAGGCGTCTCCACGAAAAAAACCGAGGAAACAAAATGTGGTTACCACGGAAGATAAATTCAGCAAGGTTTCACTTGAAGAGGAAGACGTTGAGCTAGAGAGCAAATTCCGAGATAAGCGGAAAGAGACTAAAGTAGACAGCCCGTTAATACGCATACAGAAGCCGGCTCCAAAACTGAAGACGGAAGAGCCCGCCCAAGAGGTGAAGCAGGAGCCTGTTGAACCAGATGAAAATACCAACTACTATATGTTCATAAGTCGGAGAAGAAGTAGTGCTTTGGGTGATTATAAAATTAACTCAAAGGCTGCATACCATCATTTTTACAGATATTCAGACGTCAAATCGAAAGAAGAGAAGAAGCCGATAGAGCTGCTAAACAACAAACGGATTTTGCAAAATATTTCTGCTTGGAGGATTCATCATATTTCATCGCAAATGGATGATCTGTGCTCCCTGGAGAATGAAGTCTGCAACAAACTATTCGAGTTTCAAAGGGAACTGCCTCGACCGAGCAAGCAGTTCATGCTCACGGCTTTGTGTCACGACCTTCAAAATGGGAAACGACACGCTTCGGTTGACGAACAATTAAGAGTGCTCCACGAGCTGATTCAGGGAAATATTCAACGTTGTCAGCTTAGCATGGAGCAGCTGGTCGAAGCCAAACAGACAATGTTACGAGTCACTGACCATAAACCAAAGATACTTGATATCATCAAGAAACACAAACACAAAAGATCAACGAAGAAAAAGACCCTCCCGTCGTATTGA

Transcript

rna-XM_065199900.1

CGTCAGCGAGGCAGCCTTGGACAAACGTGAATGAGGATCGAGCCAAGGATACAACGTTTGATTTGTAAACTAATAAGTAAATTCTTATAGTTAGGAATCTCAATAAAACTTGCCTTTATTTGTGGGCAAGGTCAGCAGAATTTTGATCGTTTTTTCCTGTGATAGACAGAAAAGTTGAACTGGAGATACTGTGTTTTGTTTACTGATTTCATGGCCGGGCATGAATCGTTCGCATGATGAAAGGCAGAGTTTACGAGGAGAAGGCGTGATGAACAGTGTAAGCAATCGTTCTATGAACCCGGTTATGTCAGTTGCAAGCCTAGAAAAAGACAAACACGAGAGTTCCATTGGTCCAAAGATGAATTCAGGGAATGAGCACTCGGGCTACAGGGCTGTGGATCTGATCAAACCAAGCAAGTCTTTAAGCAATGCAATGTCTCATGTGTCTGTTGGGTCTGCACCACTGCCTCCAATGCCGCCATTGCAAGCACCGTTACTTACCAGTATTTTGCCAGGTCCTGGTCACCCAATTATGCCACCAGGACTCCCACATGGAACATTGGTTCATGGAAGTGCGCTCCCTGCACAAATACCCTTGATGGGCAGAGCAGCTGCTGCAGTTGCCCCACCAAGAGCCAGCATTGCTGTTCCCCCACTGAGAGCAACAACAATGCCTCCTCTAAAGTCAGCTAGTAATGCAAGTCAAATATCACAGAATATCAAGattcCAGTACCTGGTAAAGGCACCAGCATCTTTTCTCCTGTTGTCCCATCCAACAGACTTCAACCATCATCATCTGCACAGTCATCTGGACAAATTATAAGTCGATCTATTGAGCATACCAAAGGTTTAGATTCAAAGACCAGTCATGTACAGGCAGATGTACACCAGATGCACTCTAATTCTAGCTCAGGCAATGCTGTAGCTGCCGGCACAGCAACGGTTCAGGTTATTGCATCTGGAACAGCTCCTCTGGGATCTGCTCAATCCAGCAAATCATTCTCTGTCATACCAAATCAAAATATACTCAAAATCGGCTCACAGAGCTTGCAGTATAATCAAACATCAGCAACATCAAATTCCATTGCAGCTGTCACAACCTACAGGGTTGCTCCTCCACCAAACAACATTGCTTTCAGTAAAATCATACCACAGCCAATATTGATTCCATCAACCACATCAGGGACACCAAGCACCACAAAGCCGGACTCCcagGATCATCCAAAAAGCAACACATTGTCAAGCTCAAGCCACGGCCGCCTCTCGCCAACCACAACTTCTTCTCACCATTCTGCTTTTACTGCGCATCATCACTATAATTCTGGAATACCTGGATCGTCAAACCAGCCACATATGCCATATTCATCAAATGAAAATAAGAACGACAAACTGAAGCCTGGCAATCCGTCGCTACAATATGCCATTGGATCATACTTCCCAATCGACACTGGATTCTCACATCCAATTGGAGTTCACAGATTTCCTTCTGGGACACCGTTCCACTCGTATGTACGAACTCCGTCTGGCTCGACTTCCAGCTATGGTTCATTTCCCATGTTTGTTGAGGGGACTCGTGGTTTTGCTTCAGCTCCACTGCCAATCCCAGGGATGACACCGTCAGCAAGAGACTCACACCACCATTCAACATCAGGGGAATCCTCACCCGTAATGAACAGCTCATATTCAATCCACAACTTCCCGAACCTTCAGTCATCATCATACCATACGTCCGGACAACAAAGCAATGTCTCCTCCTCACGACCCGGACCCGGAATCCTACGCAAGCGCACAGCTGAAGGGTATCCAGTTCATGGCCTGGATAGAATCTCGAGCCCAACCAAGCAAGAACCTCGTATTGATCACAGACAGGAGCACTGGTCTGATTCGAGACCAAGTTCCGGATCCGGTAATGCACCTTCACGCCAGGAATCGCCGAGACTTTTATGTGATGAAAAGACAATATTCAGCGATAGCTTCACCTCTGTGGCAGAATCCAGTAGCTACATAAATAGTAGTATTTCTTCAATAACAACAAACGCAGAAATGAAAGTAGAGCCAGTAACCCCTCCAGTGTCTGCTCAGAACAGCAGTGTGAGTGTTTCTGGTGCGTTGATGCCGGCTGTTTCAACTGCATCTGTCCCGGAGGCGTCTCCACGAAAAAAACCGAGGAAACAAAATGTGGTTACCACGGAAGATAAATTCAGCAAGGTTTCACTTGAAGAGGAAGACGTTGAGCTAGAGAGCAAATTCCGAGATAAGCGGAAAGAGACTAAAGTAGACAGCCCGTTAATACGCATACAGAAGCCGGCTCCAAAACTGAAGACGGAAGAGCCCGCCCAAGAGGTGAAGCAGGAGCCTGTTGAACCAGATGAAAATACCAACTACTATATGTTCATAAGTCGGAGAAGAAGTAGTGCTTTGGGTGATTATAAAATTAACTCAAAGGCTGCATACCATCATTTTTACAGATATTCAGACGTCAAATCGAAAGAAGAGAAGAAGCCGATAGAGCTGCTAAACAACAAAcggattttgcaaaatatttctgcttGGAGGATTCATCATATTTCATCGCAAATGGATGATCTGTGCTCCCTGGAGAATGAAGTCTGCAACAAACTATTCGAGTTTCAAAGGGAACTGCCTCGACCGAGCAAGCAGTTCATGCTCACGGCTTTGTGTCACGACCTTCAAAATGGGAAACGACACGCTTCGGTTGACGAACAATTAAGAGTGCTCCACGAGCTGATTCAGGGAAATATTCAACGTTGTCAGCTTAGCATGGAGCAGCTGGTCGAAGCCAAACAGACAATGTTACGAGTCACTGACCATAAACCAAAGATACTTGATATCATCAAGAAACACAAACACAAAAGATCAACGAAGAAAAAGACCCTCCCGTCGTATTGATGTTCGAGCGGTTTTAATGATTGGCGTTTATATCGTAGCATCGTACAGAgtctatttttgcaaaggaGCAGAATTATTTTGCTCGCACCCAAAGAATATCATCACAAATAGATGCACGGCTTGAGTTATAGTTCAGatttaaaaaggctttttgTTATCAGGCGCCTGCTATCATAACGAGTGGGTTTTGAAAGaatcagtttcttttttattttgatttactACCCTCAAAAGTTCCACATTTGCGAAATTTGGAAATATCGGTGGATGCTGCTCAGTTTATGTGCTAAAAACgctattatttcatatttaagcTAACATATTTAGGATTCTTAGACCTGAAGGAAACCTCCTCTCTATCgaggaagaaaatttctagGGACACTTTAATGAGGAGATCTTCTCTCCTGGGAAGTCCAATGTTAACCACAATTGTCTCTTGAGAGCCTTTGTAGTATGCTCGGTGCGAGTCAAATAAAATTGTGATAGACGCTGTAAATTTGGAGTTGTACAGTACTTGTGCTACATCCTTGTTTCATATTATGTGTAAACTAGTTGTATTATCTTGGATTGTAATGTGATGGTTTCCCGTTGATCAAAGTATCATTTAATATGTATATTGCAAAATGACTGACTTTCTCAGTCTCTTAGTTCCGTATCGATATGTACATTATAGTCTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16014 all species →	SAP130_C	Histone deacetylase complex subunit SAP130 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024137 all species →	Family	Histone deacetylase complex subunit SAP130	Interproscan
IPR031963 all species →	Domain	Histone deacetylase complex subunit SAP130, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13497 all species →	HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19192	SAP130; histone deacetylase complex subunit SAP130	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.