Gene detail

Detailed information of XP_065056153.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:9625402...9646278
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135684499

ATGAATTTCAATCCGCTAATGGACAGGCGCAAAAGCGTCTCACCAGCCGCTCTGAAAAATGAACGGAAGAAAATGGAGTTATCTGATCAGTTGAAAGACGTATATGGAAAGAGGAGACAGTCAATGCCCCAGCCCTCACTTCAAAGCGTTCTCTTCGGACAAGCTCTTTACAAGATAAGTGATACAGTGAGGGACATCTGCACAGGTATTCCAGTCGATCCACTACCAAAAGCTGCCACAAACAGAAGCAAGGCTGTCGCTCATGCACCACGCAAAAAGCCTAAATTAACAGCGGAGAAAGAAAGGGAGCTGGTGCTAGATGCTTTGCAGTATTTCCCAATTGGAACACATGATGTCTTGGAGCCTGAATTTGCTGATGAGCTCAAAAAATATGGACATATATACATGTACAGATTTCGACCAACGTTAAAAATGAGGGCGTACCCTCTTTGTCATTACCCCGTCGTGACGCACAAAGCTGCTGCTGCAATGCAAATGATTATGGGCATGCTTGATCCAAAAGTTGCAAAGTACCCTCATGAGCTGGTCACGTACGACGGACGAGGACAAGTTTTCTCAAACTGGGCACAGTTCTGGCTTGCAATGTACTATCTCTCCACTATGACTGAAGATCATACTCTAGTTATTTATTCTGGCCATCCAGCTGGACTATTTCCAAGCTTTCCAACTGCGCCAAGAGTTGTTGTGACAAATGGCATAGTGAAGATACCTAAAACTCTACCAGAGGCAGAGCAAGAGATTTTTAGCGTGGGTGTCTCAATGTTTGGACACATTGGACCTCAGGCTGTTGTTCACGCCACAATGATAACCATGATATCTGTTTATCGAAAATTTAAAGGTTCTGATGATCTGAATGGCAAGGTTTTCGTATCAGCTGGACTTGGAGAAATGGGATGTGCGCAAGCTTTGGCGTCTAAAATGAATGGCTGTATTGGAGTAATTGCAGAGGTCGATGATTACCTAATAGAAAAATGGCAAAAGGAGGAATGGATCACTGAAGTGGTTGACGACCTCGATGAATTGATTGCAAGAGTTCGAAAAAGCAAAACAGAGAGTAAAGGCAAGTGTATTGCATACCATGGCAACGTGGTTGATGTCTGGGAGAGATTTGCAGAAGAATTAGAAAGCACAGGAGAGTTGCTTGTTGACATTGGAACGGATCAAACAAACCTAAAAAGACCATTTTCAGGAGGATATGTGCCAGCCCAACTCACCCTAGACGAGATGGACATGATGATGAAGAAGAATCCAGAGAAATTCAAGAAGTGTGTTCAAAAATGTCTTCGATATCATGTGCTAGCAATAAACAAACTAACTGATGCAGGAATGATTTTCTGGGAGTATGGTAACAACTTGCAATATGAAGCGGATCAAGCCGGCGCTGAAATTTACAAAACAGATGATGCGCCGGCAAGGGTTTTCAAATACCCAACTTATGGAACTGAAATTATTGGGGACCTTGTATCAGTTGGTTTCTCTCCTTTCAGATGGACATTTACAAGTGGGAGTCCGAATGATCTCTCAGAAATGGACAAAGAAGTTGTCAAAATCTTAGAAGACATTGCACAAGCTAATATAACAGAATTGCCACCTATAACACCATTAGCAGTGCATGATTATTATAAAGATAGCATCAAATGGATGCAGGAAGTACAAAAATACAAATGGAACTATGGAACTATGTCCAGGATGCTTTACACTGATGTTAGGGGGAGAGTAGCGATTGCACTTGCTTTTAACAAGGCAATAAACAATGACGTCATTAAGGGTCCAGTTGTTTTAAGCCGTGACTACCACGATGCTAAGGCTATTGGAAATGCTCTCAAAGCAAGCGAGAACAAAGCTGATGATGGAAGGCTGCATTCAGATTTAGCAATTCAGAGTTGCCTTGGTGACAGCTTCCGGGGTGCAACTTGGATTTCCGTTAACAATGCACAAAATGTCGGACTGGACCAGATTTTAGATGGCGGATTTGGACTTGTCATAGACGGCTCTGAGGAGGCAGAGAAGAAGGCAAAAGTTACACTTTCGTGGGATATCGCAAACGGAGTAGCACAGCGTGCATGGTCAGGAAATATTCATGCTAAAGCAACAATAAACAGAGCTATGAAAGATAACCGAAGTCTGAAAATCACAGTGCCACACCTCAAATCAGATGTCAAGAAGAAAACATGGAAAAAGAACTAA

Transcript

rna-XM_065200081.1

gAAATATCTCGCATAATTGATGGCTTGTATCTTGTTTATGAAGACCCatgttgaaattgcttcaCCCAGCAGCAGTATGGTTCagagaaattgcaagaatCAAGTACACAGTTGTGATGAGATCCTTTATTTAGTTTTCACTTTGTAAAAAGATTCGTATTGGTTTTTGAGTAtgtatattttaaagaaagatatcAAACCTTGTTCAGAATGATGGAATTTATTATCTAAATGTTGCTATGCGATGTCGTCTCTCTGCATTGCCTAATGTTCCACTAGAATTCTGTTATTTATCTTGCTGAAGACGTCTTCTTCACCGTAGGCCTTGTCCTGATTAATCAAGGTCGGCCGCCCGAATCCTTCTTCGCCATTCTTTTTTATCCCTGGCAAGGTCGTCTTTTTTGATATTGCCTTTCCACCGTATCCCCGGCCCTCCTCGCTCACGCTTGCCTCGCCTTCCTGAAGACGCATTTCCATGAAAAATATGATCCAATAACTTCTTGTGgttatttacaattttgatccagttctctaaaaaaacctttccagtcttttttatctttttgtttctattagaTCTGAAGTGTTGTTTTAGACAAATCATAATTATACACCCCTAAAGTATCTCTATGAGTAAAcgtaaaagcaaaatttgttaagcTTGAAGACTCTTGCCATCGCATTTTAGTTATATCGTTGCTTTTATATCTGTCGATCATAAAGCAAATccttttattcaagaaaagcCAGAAAAGCCCCCCTTCCCCTCCCCTGTggtaacattttgaaattcaactCAAATTTGCACTAACTGTGATGGGATTCCCAAAGAAAACCTTAATGAACTTAAAgtacaagttttgagaaagtttacaaaaaggtttccaaaaaaattttctgaaattttattcaGTCTTTTTCCTTTGCACAAATATATCACAAATAATCACCATTCGCCATTCAAGTTGCTTTTGGTGCGATTATAAATTGACATTCATTCTACGAgagaattctaaaaatttcaaactaaaGTAGAACATAATTTTCTAAAGATCAAGCGAAATAGAGCTAAGCCAGGTCTGTGCTGGGGACTTAGACTTGGCTGTTCTTGTTTAATCCAACTGCAATCAGGTCTTTTAGTCTTACCTCCCATAATGGATTCGttgctttttcttcatcttcgGAAAAGATAGCTAAGCACTTGATCAAGAAATAAATTCCTTTTGATTATTGCTCGGTTCTTTGATCAAAGCCACTTAGCCACTTTAGATCTCCTTTAAACTTGATGCATTCGATAGGTTACAAAATAAGTGTTTTCTGACCCTAAATAAGCATATTTGAAAGGAGAGAACTTTTATGGCTGGTTAACCCTTCCTTAAGCAATAAACTTTAGTTGGCTCATTTGGGAGACTACCGGACTTCGTTTTAAAGCTTCAGATTGTGGACACACAGTTGCACATCAACCCCAGTTTGCAATGAATTTCAATCCGCTAATGGACAGGCGCAAAAGCGTCTCACCAGCCGCTCTGAAAAATGAACGGAAGAAAATGGAGTTATCTGATCAGTTGAAAGACGTATATGGAAAGAGGAGACAGTCAATGCCCCAGCCCTCACTTCAAAGCGTTCTCTTCGGACAAGCTCTTTACAAGATAAGTGATACAGTGAGGGACATCTGCACAGGTATTCCAGTCGATCCACTACCAAAAGCTGCCACAAACAGAAGCAAGGCTGTCGCTCATGCACCACGCAAAAAGCCTAAATTAACAGCGGAGAAAGAAAGGGAGCTGGTGCTAGATGCTTTGCAGTATTTCCCAATTGGAACACATGATGTCTTGGAGCCTGAATTTGCTGATGAGCTCAAAAAATATGGACATATATACATGTACAGATTTCGACCAACGTTAAAAATGAGGGCGTACCCTCTTTGTCATTACCCCGTCGTGACGCACAAAGCTGCTGCTGCAATGCAAATGATTATGGGCATGCTTGATCCAAAAGTTGCAAAGtACCCTCATGAGCTGGTCACGTACGACGGACGAGGACAAGTTTTCTCAAACTGGGCACAGTTCTGGCTTGCAATGTACTATCTCTCCACTATGACTGAAGATCATACTCTAGTTATTTATTCTGGCCATCCAGCTGGACTATTTCCAAGCTTTCCAACTGCGCCAAGAGTTGTTGTGACAAATGGCATAGTGAAGATACCTAAAACTCTACCAGAGGCAGAGCAAGAGATTTTTAGCGTGGGTGTCTCAATGTTTGGACACATTGGACCTCAGGCTGTTGTTCACGCCACAATGataaCCATGATATCTGTTTATCGAAAATTTAAAGGTTCTGATGATCTGAATGGCAAGGTTTTCGTATCAGCTGGACTTGGAGAAATGGGATGTGCGCAAGCTTTGGCGTCTAAAATGAATGGCTGTATTGGAGTAATTGCAGAGGTCGATGATTACCTAATAGAAAAATGGCAAAAGGAGGAATGGATCACTGAAGTGGTTGACGACCTCGATGAATTGATTGCAAGAGTTCGaaaaagcaaaacagagAGTAAAGGCAAGTGTATTGCATACCATGGCAACGTGGTTGATGTCTGGGAGAGATTTGCAGAAGAATTAGAAAGCACAGGAGAGTTGCTTGTTGACATTGGAACGGATCAAACAAACCTAAAAAGACCATTTTCAGGAGGATATGTGCCAGCCCAACTCACCCTAGACGAGATGGACatgatgatgaagaagaatCCAGAGAAATTCAAGAAGTGTGTTCAAAAATGTCTTCGATATCATGTGCTAGCAATAAACAAACTAACTGATGCAGGAATGATTTTCTGGGAGTATGGTAACAACTTGCAATATGAAGCGGATCAAGCCGGCGctgaaatttacaaaacagatGATGCGCCGGCAAGGGTTTTCAAATACCCAACTTATGGAACTGAAATTATTGGggACCTTGTATCAGTTGGTTTCTCTCCTTTCAGATGGACATTTACAAGTGGGAGTCCGAATGATCTCTCAGAAATGGACAAAGAAGTTGTCAAAATCTTAGAAGACATTGCACAAGCTAATATAACAGAATTGCCACCTATAACACCATTAGCAGTGCATGATTATTATAAAGATAGCATCAAATGGATGCAGGAagtacaaaaatacaaatggAACTATGGAACTATGTCCAGGATGCTTTACACTGATGTTAGGGGGAGAGTAGCGATTGCACTTGCTTTTAACAAGGCAATAaacaatgacgtcattaagGGTCCAGTTGTTTTAAGCCGTGACTACCACGATGCTAAGGCTATTGGAAATGCTCTCAAAGCAAGCGAGAACAAAGCTGATGATGGAAGGCTGCATTCAGATTTAGCAATTCAGAGTTGCCTTGGTGACAGCTTCCGGGGTGCAACTTGGATTTCCGTTAACAATGCACAAAATGTCGGACTGGACCAGATTTTAGATGGCGGATTTGGACTTGTCATAGACGGCTCTGAGGAGGCAGAGAAGAAGGCAAAAGTTACACTTTCGTGGGATATCGCAAACGGAGTAGCACAGCGTGCATGGTCAGGAAATATTCATGCTAAAGCAACAATAAACAGAGCTATGAAAGATAACCGAAGTCTGAAAATCACAGTGCCACACCTCAAATCAGATGTCAAGaagaaaacatggaaaaaGAACTAAACAGGACAGGGTTGTTGGTGGTAAAATACGGAACGCCTTTCAAGACTAGAATCACTAAAAAGTGAATCGATTAAAGCAAGGCAGATGATGAGTTGAAAAGATCAGAGGAACCTGAAGAAATTCCACCCAGCATATGCTGGTTTTGTGAGTGTGAAATGCGTTTTTCATCATTCATATCTGGATTTTTCGAAACTTCTAGTGTTGTTCTATTACCGATTTATTCATTGTTCATTTCTGGATGCTCTCACATTCTGCTACATATTTTTCGCAACTGTGAATTTAGATAATTCGGACTTCCTGATCTTAGAATATTCGCaagagttttatttttgagaaaatattaatcttctttgttc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17391 all species →	Urocanase_N	Urocanase N-terminal domain	Domain	Interproscan
PF01175 all species →	Urocanase	Urocanase Rossmann-like domain	Domain	Interproscan
PF17392 all species →	Urocanase_C	Urocanase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036190 all species →	Homologous_superfamily	Urocanase superfamily	Interproscan
IPR038364 all species →	Homologous_superfamily	Urocanase, central domain superfamily	Interproscan
IPR035400 all species →	Domain	Urocanase, N-terminal domain	Interproscan
IPR035085 all species →	Domain	Urocanase, Rossmann-like domain	Interproscan
IPR035401 all species →	Domain	Urocanase, C-terminal domain	Interproscan
IPR023637 all species →	Family	Urocanase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12216 all species →	UROCANATE HYDRATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006548 all species →	Biological Process	L-histidine catabolic process	Interproscan
GO:0016153 all species →	Molecular Function	urocanate hydratase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01712	hutU, UROC1; urocanate hydratase	EC:4.2.1.49	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.