Gene detail

Detailed information of XP_065056239.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:5445939...5455447
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065200167.1

gttttctcaacAAAGAAATATCGTGCTTTACCAACCAATCGTACGCTTTCTTTCAATTCGATTGTTTATCGAACAATACAACTCGTGTGGCTGTTCGAATGAACCAATCCGCTTCAACGATTTTGCGCGGGCTCACTTTGCAACGGTTGCTGGTAATAACTTCACAACAAAGAAGAATATGAGATTGGCCTAAGCAAGGCAACTATTTCTCTAGGAAATCTGGCTATACTGTTGATGTTTTAACTTTTGCTACTATATTTCGTGTTCGAAGTTGTTAATCAAGATGcctagaaaaaatttctacgAGATCGGAAGtgacatttttgcaaaatggccTGGAACAAACATGTACTATCCTGGCACCGTAGTGGAAGAGTATGACAAGCCAACAGATTCATACATggtgaaatttgaaagtgaACTCGATCCTTTAGCGATTCTGGCAAAAAACATTTCGAAACCGAGTCAAGTAAGACAATGGAGGAGCCGTTCTGCATCCCCTGCTAGAACTCCAGGACGAAAACGGAGGACAAGGTCCAGATCAAAGTCACCATCAAGAGCTTCAAACAAGAGGTCTCCTACTAGGAGAAGATCGCCAGGTCGTAAACCAAAATCAACACAAGACAGTAATGAGTCAAGTCCTAATAATGAGGAAGTCAAATCTGAGCAGGATAATACTCCAGTAAAGCAAACAAAAGAGAGGATTGAGACAAAAGAAGAGAACTCAAAAGAAGAGCAGACAAATGTGATTAAAGAAGAACGTTCTGAAACAATTGTGACAAGGCGTGTGACAAGGTCAGTGGCAAAGTTGCAAGAGAAggaaacagaaatttcaaaacaagaagAGGCAAAAGTGGAAGGAGAGCCGAACGAGGCCTGTGGCTGGCTTTGCCAATTAATCGGATtattatcaacaattttgatgCCATTAGCTGTTTTAGCACTAGGCTTTGTTTGTAGTGACAAACTACAAGCATTTTCTTTCACTAAGTGGCCCAAACTACCATCAGCTGGTTCACTTTTGGACTGGAGGGTGCTTCTTGGGGTTGGTGTTTGGTTTGATTTCCAGTTTGTTCTGACAAAGTTTCCATTTGGTGAGGTTTCCCAAGGCATTGTTACAAAGGAGGGACAACCGCTAACATATAGATGTAATGGCTGTATCGGGTTATTCTTGCAACTGGCTCTTCTTGGCATTGGTGTGTATACAAAGACAACTTTCCAGGTAGCAGACCTGGTTGACAAGTTCTACTTAAGTATTATTGCATCAGCCATTATTGTTGCATTTGGTACATCTGTCTTGGTTGCACTGAAAACATCGATTGATTCCAACTTCAAAGGTCAAAGACTGACACCTGCAAACTTCTTCAATGGAAGAGAAATCAACCCAAGTGTATTTACATTTGATATAAAATGGTGTTGTTCAAGGGCATCATTCATAACATGGATTGTGCTTGACCTCCTGTTTGTTGCAAAGCATTATTCTGATACAAAAGGTGAAGTAAACTGTGCTGCTGTGGCGGTTGCTTTTTTCCAACTGGTTTATTTGGGTGGtacattttttcttcttgagAAACGGATGGCTACAAGTCCTCTATTCATGGAAATGGCTCCAGGGTTTGGTTTCATACTTGGCACAATGGTATTTGTACCTCTGTTCTACTCAATGCAGGTTCTTTATTTGGTTAGAACAACACCCCAGTTGCCACCGGCTACATGGGCATTGGTTATCGCTCTTCAAGTCTTTGGGTACTACATATTCTTTAAAGCAAATAGAGAGAAATCCCAATTTAGATCAGACCCAAAGAAAGCGATGAAAAGAGatgtaaaagttgttttcacTCAAGATGGCAAGAACTTGCTTGCTGATGGCTGGTGGGGAAGGCTGAGGCATCCAAATTACCTTGGTGATATTCTTGTTGCCATTTCATGGGCAATTCCGGGAgGCTGTAATCATGCTGCACCTTGGTTATACCCTATTGCCTTGGTTGCAATGCTGGTTGCTATGGCTAAAGAAGATGATGAGCGCTGTGCAAAGAAGTACGGACTTAGCTGGGATGAGTACAAAGATCGCGTTAAATATGTCATCGTCCCATATGTTTATTAAACTTTTGGTGATTGTAAAACGAACTACAAGTTATAGCAGGGAGATTAATTGTGAATAGTTTCACAAAGACCGAAAGACATATTGGCACTTTCAAGCAAAACTGGCTGACTGCACAAAAGAAATTACTCTGTACTCTATCATTGTGCATTCCCGAAATCAGTTCAAAGCTATCTGAGAAACTGGTTGCCTGGCTGTTAGACTTGCTGTAAAACGAAACACAATTTAACATCAGTGGTGATAATTCTCTAGCACAAGTAAAAGATGCtaatatatgtttatatgattgtgaaataaaaatattttattgtatattcACAGTTTTAGGGGATAGATGTTAGTTCTTAAGTTGCACATAGAGCCAATACGTTGCTTCAGGTAACCAAGAGTATGCTCTAATTATTGCCTTTATCTTATTGCCTCCATAAGTAAGCAACTGcccaactgaaaatttttagtacACAAACAAGTCAGGTTTCATCAaccaattttttctgactaACTTGGGTTTCTGAATAtctattttctaaacaatGGTGGAAAAGTGGAAATTAAATCTATGTGATATGTTTCAACTAGATTCTTTCGATATTAGCCTATTATCAGTGCACAGACAAACCTTTAGCTGAATCACCATAGGATCTAGAACAGCAGAGATGAAAACACGCTCTTTCAGCTACAagttatttcatttcacttaGTAACTCTCGTCTGTTTTATTCTTAACCATTGGTTTAGtattattcttaaaaagcTTCAGTGTGTAAATACCATATCAATATGACTGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09465 all species →	LBR_tudor	Lamin-B receptor of TUDOR domain	Domain	Interproscan
PF01222 all species →	ERG4_ERG24	Ergosterol biosynthesis ERG4/ERG24 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019023 all species →	Domain	Lamin-B receptor of TUDOR domain	Interproscan
IPR001171 all species →	Family	Sterol biosynthesis ERG24/DHCR-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21257 all species →	DELTA(14)-STEROL REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016126 all species →	Biological Process	sterol biosynthetic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan
GO:0005637 all species →	Cellular Component	nuclear inner membrane	Interproscan
GO:0006695 all species →	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0050613 all species →	Molecular Function	delta14-sterol reductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19532	LBR; Delta14-sterol reductase (lamin-B receptor)	EC:1.3.1.70	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.