Gene detail

Detailed information of XP_065056258.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:5551044...5557747
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065200186.1

GGTCAACTACTTGAACTTCAAACACTCATCAAAATGTGACAAAGGTAGCGTCATATCACGTGAGCTAGATTTCATTGGCCACAACCTTTTCCCTAATCAAATGCAATCGTGTATATCCAAAAAATGCtataattttttagcaaacaaactttttcaaaatgccaagctaaagaaaattttctttccaggGACTTAAATCAAAACCGTGACTTCGTTTGTTTACTTAAGTTAACATCGTAAATGATTGGAATTAATTCTGCGGCAGGGGTTTTGtttcagtaaaaaaaattatcctaCCACATGGAGTTATTTTCCAAGGCAAATTTCCAAGGCAAATTTAATTGAGAGCAAGGCAAAGGATATGCAATACAGTAAATGATCTAAAATGTAGCCGATAATATAAAGTGACAATTGCCGATAGCAACTGAGTAGCAAATGCTTTATTTACTAACAATACTTCCGGGTGTAAGTAATCATGCTTGCCCGGCTTACTTGCATGGTTCAAAAACTCGCAATCACAAGATTGGCCCATTGGCTTCCACGATTGGGTAATTCAACCCCattgatgaaaaagcaaaaatatttaactgtTTTATCCGGAACTCGAAGGAATGTTTGAGCAGCCAAGAATTATATGTATCAGTACCAGCAGACCTTTCTCTTTGCTCAGTATTTTTGAACCGGTTAGGTGATGCGTGAACGATTAGCGACGCCCCGGTTGTTATTTGAGCCCAAATGTTAAGCAGGTCCGGGGCCACTCAACCAGGTGATTGTGCAGTGAAGTATGAAAACTTGCATTCAGTTGACAGCTTAAATAATATCCAACTTTGCTGCGAAGattattttgcagatttgcaaATTACTTCTTTGCGGCTGTATAcgtgaagaaagaaaaacttaaaagaGGATTTTAAGTCAGTCATTGCAAGGGTCAAGGTGGATGAACAGCCAAAAAATCAGCTTCAAAAGTGGTTCTGACATCATCAAAAGAGAGGCCTTTCCACCAATCAAAGGTCGCACCCAGGGTTCGCATGAATAGCTGCAAATGCCAATTGATAGTTAATAATGCAGGTCTTTTGAATGTCGCCATACGCCAAATCCTGAATCTTTTACAATAGAATATTTGTACCGACCGTAATACCTCGCTTTAGTTTTAGTTTAGAATATGGATTGCTTGTAGCTCGCACTGCACCAATGCACCTGAGTCTGCTAGTGGAAATATAGCACAACGGACAAATATACATGATGCAACGAATCTGAATCAACAGCACCTAGGTTTATGGAAAATTGGATAGAAATTGCACTCATAGCATATAAGACTTAGCATATTATGCCTAGATCGTTTTTACTGAAACAATACTTTAGAAGAAAATACTACTGGTTGATTGATGATACCTATGATGAAGACGAAGAAAGCGAAGCAGATAGtgtcatttcaaattttgcttatgGAAGTCGAGACATAGGTCCATTTACAAGCGCATCACCTCATCCTGCAGTAGAAAATTATAATTGGAATTATGAAGATGAGAAGTCGTATTGGTTTGAGTTAAATGGCCAGACGGATAAAGAACGTATTGATAGCGGAACCAAGCATGGCTTTGAACAAGGTGGAAGGGAACCAATTGCAGGTTCTACAACCAAACAGCTTCCAAACAAAAGTGATTCCGCTCCAGAGTTGCAAACATCAGATAACTTATCGCAAAGCAATTTAGATGAAAAGTTAAACCAAATGTTGCAggAAAATCCAGACATTGTAAAAAGGAACATAAAGCAGTTTTTAGAGAATAATAGAATACTTTTGACGGaaatttctgttgaaattggcatcaaagaagaaaatctgAAGTCGTACATCGATGGCAACGAGCCATTTACAAAAGAACAGAGAGAAGAGTTTTATAAATGGTATCTTATGAAAATTCTTAGGCCACCAAGTGGATTAGATGAAAAGAGCTATACATGTTACAAATGCGGAAAGATTTTTGCTTATGAGAGCTATCTTGAGAGGCATATTAAATATGTGTGTCCAGATAATACTGGCAGAACGTGGAAGTGCTCTTACTGTGGAAAAGCATTTCAGTATCCATGCTACTTGAAACGTCATATCAGATCCCACACAGGTGAATCGCCTTACAAATGCGACCAGTGTGATCGGGCGTTCGTTCGGTCAACAGACCTTCAACGGCATATAAGGAACCATACTGGTGAAAAGCCGTACAAGTGCTCAGAATGTGAACGTGCCTTTGCTAGATCAACAGACCTAAAACGGCACATGCGCACTCATACTGGCGAGAAGCCTTACAAATGCTGGCAATGCGGAAAGACCTTTTCACAGTCTGGCAGTCTTCAAACACATCTCCATACCCACAACAAAGAGAGCAATGGCGGAAGAAAACTTGCTAAAGGCTCTAAATGAGATTTGATCGGCATCTGCATAGCAATAAGCAGCAATTCGTACCATCTTGCAAAAGAAATCCTTTAAGAGCATCAGTTTTCTGCTTTGTTTTCTACTGATGACAACATTCTTCAAAGAAGTTGGTAGGAAGAACTGGCAATGAACTGTCACCGCAAGATTCAGATATGTTTTCCCCACTATATTTAGTTTAACCATCATGATGGTTCAgtgttacattttttttagTGTCAATAAACGTTAAATATACGTTTCGTATCGTAATACAAATTtatacaatgttttttataatcaaaGTCTAGATATGATATATTTGCTTATAGTTTCAGGGTATAGGTTATTGCGTATTAGAATGATACTGCTAGAGTATTATTACTTTTGCAGCTATTTGCTTCGAAGTAAATCCTGAATAATCCATCTGTCACAAAGCCACTTTTGCCATGCTTGTATCATGAAAAAGGAATATAGTTGCAGATTTTCgcttttttaaatagtttGATATAGTTAGTTATCATGAATTTTAAGACATTGTAGTTCAAAAAagaaatccaatttttttgcttaaaatgtaaatgtgtaaatatgttttattttggattATGGAATGATAGCTattttgttccaaaaatttttcatccttAATCTTTCATATTGTGAATTGTacagttttaaatgaaaatattttgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF04814 all species →	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan
PF13465 all species →	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050329 all species →	Family	GLI C2H2-type zinc-finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR006899 all species →	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan
IPR044869 all species →	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818 all species →	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065056258.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.