Gene detail

Detailed information of XP_065056321.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:6670111...6675067
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065200249.1

GGTACTTCCCGCCATTTCCGTTAGGGTTGCACTCACTGATCGCACTGTACACAATGCAACTCAATGAGCAAATTCTCAAAGTCAAAGGGCAAAACATTGATGATAAATTTTGTGTCGATAGGGAAGCATCAAACAGACTTACATAAAAGTTGAGACGATTTTGCAAATCAACGACTGtcagaaatgaatttttatagaCTGAGAACCTCTTCATTAACCTGCTTGCGTCACAACCTACGATTTGGGAACTTTAGAAACTACTCTAAAGCAAATTATACAGCTACATCAAAATTTTCGCAAAGTAAGGTTGGCGACTTCACACAGGACAGTCCTCATCACGAGAATGCATTTTTATCAGACCAGTTTCTTATACGGAATATGCAACGTATAATGCCGACTGAGATTTTCACTGCAATAAAAAGTGATTTGGTTAGGTTTGGTAATCGTGTAAGCTCAGACATATGGAAGTTGGGACAAGAGTGTGCTGTAAATGAGCCATATTTACATAAAACATCGGCATGGGGAAAGAAGGTTGACGAAATTGTTACCTGTAATGCATGGAAACAGCAAAAACGAATTTCAGCCGAAGAAGGGCTAGTGGCTATTGCTTATGAGAGAGAGTTCCTTGAATTTAGCCGGCTTTATCAGgtgataaaattgtttatgtaCTCGCCATCTTCTGGGTTGTATTCATGCCCCCTTGCAATGACAGATGGAGCGGCGAAGACTTTTGAAGCGAATGATTTACTGCCGTCATATCAGAATGTGTTCTCTCACTTGACTACCAGGGACCCTGAAAAATTTTGGACTTCAGGGCAATGGATGACAGAAAAACGCGGTGGATCTGACGTTGCTAAAGGGACTGAGACCATAGCTATTCCAGTCTCTGGAGACAAGAATTTGTATAGTTTATATGGTTACAAGTGGTTTTCGTCGGCAACAGATTCAGATATTGCCTTAACGTTGGGGCGTGTTGCTGACAGTAAGGGAAGCGTAGTACCAGGCACAGATGGCATCACGATGTTCCTGATAAAAACGAGAAATGACGACGGGAAGCTAAATGGTATTGAGGTAATGAAGCTTAAGAATAAACTTGGAACAAGGCAACTTCCCACAGGTGAGTTGCTTATAGATGGGGCGTTAGCTGAGAAAATTTCAGACCCAGGTCGTGGCATTTCTTGCATCTCTAGTATGCTGAAAATTACCAGGCTGCATAATGTAATATCGAGCGTTGCGGGGCCGAGAAAACTGATAAATCTTGCTCGCGATTATGCTCGAAGACGTGAAGCCTTTGGACAGGTCATAGCTAACCATCCTTTGCATTTGAAGACATTGGCGAAAATGGAGGCAGAGACACGTGGCTGTACTGCTCTTATGCTAGATCTTGCACTTAAGCTAGGTCTTGAGGACTGTAGGTCTATTCCAGATGAAGATGCACTTTTACTACGTTTGATGATGCCTGTCGCAAAAATGTACACCGCCAAACGATCTGTCGAATTGGTTTCAGAGGGTCTTGAGTGTTTTGGTGGACAAGGGTACATCGAGGATACAGGTCTTCCGGGGTTTTTGAGAGATGCACAAGTTCTCCCTATATGGGAAGGTACTTCGTCTGTGATGTCTCTAGACGTTCTAAGGGCCATTCATAAAACAAATGGTGAGGCGCTGGTTGCCTTGCAAAGCTATGTGTCACGTGTTACTAAAAATGCTtctcaaaatacaaaattgagAGACAGCTGCACACAATTAGAGAGTTTCTCGCACAGTCTGTTTGACTTTGTTGCACGCGAACCTAGTAAGGTACAAATCGCAGCACGAGATTTTGCCTATAGTTTGGCACATATTTATATTGCATCACTGCTTGTAGAACATGCTTGTAAAAGTGGAGACGAGATAGATGTTTTTACTGTTAGGAGTTGGATGCAGAGAGACATTGTTCCTGTTGTCACTCAGAATAGACAAGGGTCCTATGACGTCGATATTTCCGCCTACAAAGCTTTCGTATATGAAGGCtatgatgaagaaaatttgatcgCTTCAACATTTATAAGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18158 all species →	AidB_N	Adaptive response protein AidB N-terminal domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041504 all species →	Domain	Adaptive response protein AidB, N-terminal	Interproscan
IPR052904 all species →	Family	Acyl-CoA dehydrogenase-like protein	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42707 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065056321.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.