Gene detail

Detailed information of XP_065056502.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1677:4412839...4417305
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01269 all species →	Fibrillarin	Fibrillarin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000692 all species →	Family	rRNA 2'-O-methyltransferase fibrillarin-like	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR020813 all species →	Conserved_site	Fibrillarin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10335 all species →	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0000494 all species →	Biological Process	box C/D sno(s)RNA 3'-end processing	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008649 all species →	Molecular Function	rRNA methyltransferase activity	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:1990259 all species →	Molecular Function	histone H2AQ104 methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14563	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.