Gene detail

Detailed information of XP_065057429.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1682:5772826...5786104
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065201357.1

TACGAGGCAGTAAAGCAGAAAGAGGCTAACTGATGGTCGATTTGCGATTTACCACTTACATTTACATGTAATGTTATAAGTATTATGTGAACATTGAATAAACTGTTAGTAAGACATCTAGGCAATTCACAAAATGGAGCAAAATCGATTTCGCGTGCTTTCAATTCAAAGCCACGTCGTGTGCGGTTACGTTGGCAACAAGTCTGCAACATTTCCACTCCAGgtgTTAGGCTTTGAAGTCGATGCAAtaaattcagttcagttttctAATCATACTGGGTATGAACATGTGAAAGGACAAGTACTGGAATCTTCTGACCTAGGAGAACTTTTTTTAGGGCTGACAATGAATGACATACATCACTACAGTCATCTTCTGACAGGTTATTGCTGCTCTGAATCGTTTTTAAATGATATTCTAATTGTTGTGAAAgaattaagaaagaaaaacccTGCATTAGTTTTTGTTTGTGATCCTGTTCTTGGTGATAATGGAAAGTTTTATGTGCCAGAATCATTGCTGCAGATTTACAGAGATAAAATTATACCTCTAGCAGATGTGATCACACCAAACCAATTCGAAGCAGAGCTGTTGTCtggaataaaaataagaaatgaagAGGATGCAATTAAGgcaACAGATATTCTCCATAGCAAAGGAACAAAAACTGTAATTATCTCTAGTACAGAGATCGGAGTCGAAGGAACTTTAACGTTGCTTGCCAGTTCAAAAACAGAATCTGGCTTGAAGCGGGTGAGACTACGAATGCCAAAGATGGAGGCCATATTTACTGGAACTGGTGACCTGTTTTCCTGCATGCTGTTAGCTTGGATGGCAAAATACCCAGGAGATTTGAAGACTGCTTGcgaaaaaacaatatcagCCATTCATCTGGTATTAAAAAGAACCCAAAAGGCAATGACAGAGCTTGCTGGGCCTGGAAATAAACCCACTGCATTTCAAAGAGAGCTGCGAATTATTGATAGTCTAGACGATATTAGAAACCCACCTGACTTGTTCAAAGCAGATGAAATTCATTGAGTGGACTAATTCTTTATACATAGgggtttgtttttatttttgtctgaatgttggaaatttttattatcttaGCCGTATTATCTTAAAGGTAGATCAGCTGTGTTACAACTTGATCTTGCACAGCCTaatctgaataaattttgatatgatatatatCGTATGGCATAAGTCTTATCAAGGCACTTAATATCTTGTCTCGTATTATAAATATGTATTCCTAGCCTACTTTAAACATGCCATACTGTATCGATTCATTTCCTGCCTCTCCTATCTCCTTTGCGTACCTCCGCCGAAAAGGAACAGATCTGAGATCGGAACGATCTGTAAAGCTACGAGGTAGTATCATTCGCGTGTTATTTCGATATTTCGTCCGAtttaaaatttagattaaCATAAATACGTCTCGaacagtggcgtacccaagaGGGGGATAAGGGGGTCCGaacccccccccacttttctaaaatataatcctcgagatttgtccaaaaatgatgtaaaactcattgggggggggggtgtagtatactgtatgcttgtgtcaataacaattgtaaaatactttgctatttaccgtagctaacattaatcaaataatggaggaaaattttgcaaaaagggcatttCCCCGCATTTGCAAGTGTCTGAATGGCGTGGTTCAAAAAATTCTGGGGGCTCCGCCCAGACCCCACCACTGctgcagccctgggtacgccactggtcTCGCACTGTTTGAAAGCATAGGCGCACGAGAGAAAAGATTTGCGATTGGTGCTTATTGTGTTTCTAAAACATTACCCGATAATTGACTATTTTATTACCTGATTGACTGGTAattattgatgatttttatatCCAGGCTGCTTGTAGCCTACACTCGTATGCGTTAAATTTGATATACCTACTTGTGTAATGAAATGGAATTACCAGAAAATTATACTAACAACTTAATACTAACTTTGtgttatttgataatttgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08543 all species →	Phos_pyr_kin	Phosphomethylpyrimidine kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004625 all species →	Family	Pyridoxine kinase	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR013749 all species →	Domain	Pyridoxamine kinase/Phosphomethylpyrimidine kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10534 all species →	PYRIDOXAL KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008478 all species →	Molecular Function	pyridoxal kinase activity	Interproscan
GO:0009443 all species →	Biological Process	pyridoxal 5'-phosphate salvage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00868	pdxK, pdxY; pyridoxine kinase	EC:2.7.1.35	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.