Gene detail

Detailed information of XP_065057658.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1682:8338763...8354452
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065201586.1

TAAATCGAAAACTTAGCATTTTAGCTTTCGTCATGACAATTAAAATTAGTCCATTCTGAAAATCCTTGGGGATTGGTTAaatggaatgcaccctggcatTTATTatactttaaattttattctaacACTTTATGAGACCCTTCCAATTGTGCCCCTAACTAAACCCTAGACCAATCTTAAATTCCTCCCTCCCAATTCTGAGCTCAACCTCAATAATGGTGACCCCTATGTAATTATTGTTGTGTATTTTGATGTCATTCTTTTATCCATTCTGttcaacttttctttctaGGTTTGATTGTCAGGAATGACATGAGATCTCAATATATTTTAGAGAGCTTATTTTGGAGAGATGTCAGctgacagaaaattttgtgcCACCATCCACATCAAGCCAAACAACAGGCACTGTTTTGTTGAACTCTCAAACTCtattgcaaaacaattcaCATCAACAATCTCTGATAAACTGCCGCCTATTGTTGGTATTGAAAGTTCTTCTGGAGCCATTGCCTTTGCATCCTGGAGACCTCATAAATCTACTCAAATTTCCCCAGACGACCAAGTGCTGTTTTTAGGAAAAGGATTTGCAGACTGTTTGTCTCTAAAGAGAGATGACTCGgttcttgtttattttgtcaCAAATGCTGTTCCTTTGGAAAAGGTCTTCATTGCTCCAATAAAGAACCAAGAATGGGAAATACTTGAGCTGAATACCCAACTGATAGAGGCAACTCTTCTGGACCAAATAAGAGTTGCCTATTCTGCACTAGAATTTCCTATATTTCTTAAAGGATCAGCTATTGTGAATGCCAAAGTTGaATCTGTATATCCTAATGTAAAAGTTGGATATCTAGAAGAATTCACAGAGCTCCATATTGCTCCGGAGCTTACAAAGAAATCTGTTATTTCCAGAGACGAGAGAAAGATATCTAGAAAATTTGATGGtctatttaagaaaaatctcCAAACAAAGACCACTACCATGTGCGAGAAATCAGATAGTACTCTCTCATCGTTATGGAACTTCATAGTGAAACAAGGTCCAGAAGAGATAAaagaatttaatgaaaacacTATTCATGCAAATACACATTCAAGACCCACAGCTTCCTTTTGCACTGGGCAGGAAATAATTAACGAAACAAAGCACATTAGCGAAGTTTTAAGAATTCATCCTGTTGTTCCTAGGAAAAACGACACGCAAAGTAGAAGTTTATTTACCCTCAACTACCATCCTTTTCGTTGTTTTGTAAGTTTGAGCACCTTCAAGTCAATCAAACGTCAGTGCACCTGTGTATTTAGACAGAAGACTGACAAactgataatgaaaataaaaaaaattccatctCCAAGACAAAAAGATGAATGGAGAAAGATCAAAGCAAGAAATGCAGATAATTCATCGGTCGCAGAGAATGAAAAGTCCGCTATTATTGAAATCGTTCCTGTAAACGACGACCAGTTTCCTGAAcaacttcaaatgaaaaatatggctgttAGCTTGGAGGTTATGGCATTCTTGAATGCAGACCAAGGGTCACTGACAGAGATTGAATGCTTGCACAAAGATGCATCTAGTATGTTGGGAATTATCATCAATGTTCTCAGCAAAAAGGTACCAGGCCTGGACACTGAAAAGGTTACTGAAATATTCCGAGGTTGGGCAGAACGAAAGATTCAGTCACATCAAGaccaaattttattgaacGATTCAACTATATTGGAAATTAACAAACTGGAAGAACCGGCTGTAGTGGTTTCCCTTGACTTTTTGACCGCGAAAGAGAACGAGTCGTCAGAACACAGTTATTTCTTTCTCAACGGAGATAGTTTGACCGCAACATCGTTGGTTGCAAATTTCCGTACGAAAGAAGAAGCTAAAAAGCTGGCAAATTACCAGAATCGTGAtagaattttggaaaacttcAAGCTTTTCAAAGAGGATCAGTTAGGggGATTTTCTGATTTGATAGCCAGAGGAATTGCGTATCTCAATAGCATATTGAAGCCTcAAAACATCAAAGAGTTTTCGGGTTTTCCTTACGCTGACAAAACCGCGTATAGAAGCACGAAGCAATATGGAAGATTTCAGGCTTTGCCTACGCCAGGGTACATACAAACTCAAGGACCAGTTCTGTCATACATAAATATGGCGGACACGGCCTCGATTCGATACAATATAGGGTTTactcaaaaaattgaagggaaGAAGcaggaaaaaggaaacaaacctcattcatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09262 all species →	PEX-1N	Peroxisome biogenesis factor 1, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR015342 all species →	Domain	Peroxisomal ATPase PEX1, N-terminal C-lobe	Interproscan

PANTHER

No PANTHER signature was recorded for XP_065057658.1 in Rhopilema esculentum.

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065057658.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.