Gene detail

Detailed information of XP_065058409.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:186423...200094
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135686150

ATGACGTCAGTAAATGATAAAACACAGTTTACTACGAGGCTGGCAGTTGACTCACAAACGTATTACAGCCAGGGAAACGATGACGACAGTGGCTGTACTACCGAGGAGTATGCTTGGACACCTCCTGGACTTTCTCCCGAACTTGTGCGACTATTCATGTCTCGGTTACCGGAAGAAAAAGTTCCATATGTAAATAGTGTCGGGGAGAAATATCGCGCGAGGCAACGGTTACGCCAGCTGCCGCCCCAAGACTCAGATTTCAAACACTGCCATGATATGTCAGAGGAGGAACGGAATGAGCTGAAGCTTTTCCAAGCACAGCGGATACGCGATGCATTAGGTCGTGGCACTGTTCGTGTCATCCCAGAAACAGTCGAAGGAATAACTGGCCTTTGTCAGCAGTGTGGTAAGAGTATACCGCCTGGCGATGTTGCAGTATTTGCTTGGAAAGCTGGCCATGACTGCTGTTGGCACCCAGCATGTTTTTGCTGCACTGTGTGTAATGAGCTTCTTGTTGACCTTACGTATTTTTATCAAGATCGTCGTATATATTGTGGAAGAGATCATGCCGAGCTTTTGAAGCCTAGATGCTCAGCCTGCGACGAGATAATATTCTCAGACGAGTGTACTGAAGCTGAAGGGCGCTTTTGGCACATGAAGCATTTTTGTTGTTACGAATGCAATGCACCACTCGGGGGTCAACGTTATGTCATGCGTGATGACAAGCCAGTATGCTGCCAATGCTTTGAAAAAATGTTTGCTGAATTTTGCGATGCATGTGGGGACCCAATAGGAATAGATACTGGGCAAATGGCTCACGGCAGTCAACACTGGCACGCCACCGACAAATGCTTCAGTTGTTACACATGTGGTGTTTGTTTGTTGGGGAAGCCTTTCTTACCAAAAAATGGTGAGATATTTTGCTCCTCCTCTTGTAGTCGCGGGAATCCCCCGAAAAGTAATGTGGTAGCCAAGTACCCGCCAAGGTCGCTTTGCAGAGGGAAGCCTGTTCCACGTTATGAAGATAAATCATCGGGTACCGAGGGATCTGCGTCTGTCACTCCAGTAGTCAGCCCTATCGTAATGCGAAAGCAACCAGAGTTACGTGCGAAATCAAGCAATCGAAGCTCGCTAGACAAATACGGACTAGCTGCTGTGGAGAAGATGTCGGAAGCAATGAATCGACAAGCAGGAACGAATGCAGCGCAAGATAGTGATCGTGACGACGTGAGCTCGAATGGTTCTAGGAAGGAGAAGGAACTGCCAAATTTTGGAGTTAGTCGCCAGGGCTCGAAGCCTGTGTTGCGTGTGAAACCATGTCATCGGCCGAGTCAGAATAAAATCACAGAAGAGGTTTGGATTGATATGGTACCTCCAAAGAAGATTACAACTCGAACTGAAAAAAATGACGGAAATTTGTCCGCCGACTCAACTATGCTTAGCGAATATTCAGATGCGGAAAAGTCAATTATATTAGAAAAATCGCTTAGTTTTTCTAAGTCCAGTAACTATTGTCAAGGACAACAAAGATCTAAGAAAAAAGGGCGTCGTAGAGGAGAAGATTCGTATTATTCTGACTACGAAGTTGAAAAGCAGAAGCGATCGCAAAATCGATCACGGTACATCCCCGAAATACCCCCTCCAGAAAGTATTTTATCACATGTGCCTCTCAAGCAAAACACGCACTCAAAATCAATGGAATGTTTAGACTCTAAAATGCGCGTAAAAGGACGCAGAGAACAGCGCTTAAAACAGACAAAAACAAAATCGGAAACTAACTTATCGTCGTGTGAAAAATCTCTGCGTGTTAAAAATGATGTCACAAACTTTTCTATAAATCCAACCTCGCCATTAAAATCTTCATTCAAAAAGATTGATATTGGACGCGGAAAATCAAGACTTAACCAAGATGAGGATGAATATTTCAGACAACCTCGTGTTCGTGGAATGTTTGGCTCGGATGTTAAACCAAAGCGAATTACATACGTAACGAGAGACGATATGGCTATAGGAGGCTCAAGCACGAGTAAAGATTCGCGTAAAGGGCGAAAAACGAGAAATAAGCAAGAAAGATGTGTCATTTCTTGA

Transcript

rna-XM_065202337.1

TTGTGTGTAAATAGTTCATCGtagaattaaatttgtttctacatACTTTACTGTATCATTTTTTTGGTACCTTGAAAGGTTTTTGCTACTAAAAAGCGTTCTTGTGCTGTATCAGGGAATTTATCATAACCTTTTACAGTTTTTGCAGTCTCTGTATGTTCTGTAGTGCATCACGTGTTCCAAAACAACCTATCAGTCCTTAAGTCACGCAGTCAGTCATCTGTAGGGTACAAACCATGTTTGGATATTATCTCGGGAGATGCAAACTCTCCGTTCTTTGCCTACCTAAGTGCTACGTATTTATCATGCcattcttctcttttttctccACCATTTACTCAACTTAGCAAATTGTGAGGTCACAAGtgtttttttctgcatttcaAATCGTTGAGGACGGCTAGTGAATGCTAACTGATCCAATGCTAACTGATCCTCGTTTTGCAGGCTTCATAAAGGGACCGTCGtttgcatttttgttcttgGTTTTCGAGGGGCCTATTTAATTTGCTTCTTGTTCATTTTACTTTAGTCGAAGTTGACAAGGGTTTCATTGTTGGAGCTAAGGACGTAACCAATCTCTAAATGTTTTATTCGACCTGGTAGACTTTGGCTCCACATCTATGCTTTGAGTTCTAGCTTTAGGTATAATAAACTTACGCAATGACTGTCTAATGAacttatttcttttgttcattCGCGAGACCACCATTAAGTTTTCTCTTTATCCGCTTAAACTGTGCATCCCACTATAAATCGTCGTCAGTTATAATTCCCAGGGATTTTTTCGGTTCTCTTCATGCCAGCTTTGTTTAGTGTGTgtttatttggaaatttttaattgtttattttctggGGATACTCTGGCACAATGAGTATGGTTTGATTAAACCCGACATTCACCCAGAAGGATTCAACAGCTCGTGCTTTGCATTACACGAtggcattttttaaatgatatgAGGCTTTATGGCTATTGGCAGCATTTTCTCTAGCTAGATATCTCATTCAAAGTCTTTTGAATGTCAACCTTATCTATACCTTAGTTAACTATGTCTATACGAAACCTCGGATGACTGCGAAAGAATCCTACAAGTCATTTGCCTTTTTCCTAACCTTTTTTAGCTTTTCTGCTGCATTTAGCTTCACAAAAGCCaggtttcctttttttcttatttaaatGCTGCGTCtatcttcaatattttgacaagCTTCAAATGTATATATTGGCCAAGTTTCTTGATATTGATAAGGCAAGATGTTCCAGTATATGCGAATTACAAGAAATGTATTTCTcggtttttttatatttcaatgatGTAATTGTCCAAGCTATATCTTGGTGGCTACTCATTTTTATGTCAACTAAGGTTGAAATGTTAGCAAAAAGGTGTCAGGTAAACTTCGGTCATATGCATGCAGCACACATTGAAAACCAGACGTATGCTACTTTGTTTACAGAAATTGGTGTTAACTTGAATCTGCCTTTTGTCAGGTGCTGTTTATTCAATCTTCTCTCAGTAGATAATAAATCCCCCAACTTTATAAATACCACTCCCTCCTGTTGTGTTCCATAAAACCTGTTGTAAAATGTTAGGTTTTGTTTCTTTCGAAGGAGCTTACTTAATGCGCGTGTGTTAATTGATAATCATTGAGGCAGGGATGGATCGGTCATGCTGTTAGAAACAAAGATTGCAGTTCTTGCTTTGAATATGATTCATCCTTCTTTGCATGTTGTTATCGTTGAAAACACGAAAATGCTTTGGCGTTCAAAGATACAGAGATCATTTGTTCTGCCTTAGTCATAATTCGTCTTATCCGATCAGATAAAGTCCTCGCAAAAACTCACTTACGGAATTTACAAGTTTCTCATAAACAGTTGTAGATGCCATATTTGTAAGCTGTTTACTTATAATTGGCAGATTTCTGGCTAATAGTTTTTATCAAGTAAGgtgttttcttcaaagtctTGGGAGCCACTTAAAAACACCTGTCACCTATACCCTCGCAACTACGAAAAACAAGTTAAGGTAATTTTGGTTTCTTTGATTGGTGCTGTGATGTGTAAGATGCAAGTCGCTTTTAGCTGGAAGAAGCCACAGCAAGGAGCTATTACTTCCAATGgtgatttgtttttcttaaagaagAACAAACGTTGTCGCAGCAAGCCTCTTTATAGCAAACGCAACCTGTAGTTGGGCGTGTTTTGCAGGAAACCATTCTGTTGTTCGGAACTTCCGACCTGTTCTTTGATAACGATGAGTCTGTGTTGCAGCTgattagaaattaaaataggttaattttgtttaaatgttaTAGTGAAACGCATCTTGTCTATGCAGAGAAAAATCGCCTCTTTGTCTCCACgaattgataaaataagattGACAAATTTGGAATATCCTTCCGATGTTACTGAGATAGAAGAAACAGTACCAAGTTGTACCTATATGCAACCTTAAAATGGGCAGCGTAGATGGTGCTTGTGTCTCAGGTTATGTCTCAGGTCatattttttgggaaattaaCATGACGATACTGATTCTTTTGGTTATTTGTTGCTCGATGTCCGtcaaaatgacgtcatcatgcACATTTGTATTGTTGTGCTCTTGCTGTTGCCCGTCGTTTTTGGCAGTACGTTTGCAAACCTACTTTTCCAACCCATTTTTGGTATTCATTTCACATTAAGCAACTTCGAAAGCATTTTATGTAGCCCTTGCTTGATAAAAGTGAATGTAGGCTTTGCGAATAGacattcgttttggtacctttctgtttttcataattggcatacttttgcaaaaaacattaatttttttggtctTCCTAGATCTCTTCATGGGTTTTCTAGGTCTTTACGCTAGTGCAGTAGTCTAGAATCTCCAAACCACACACTATCTTGTCctgtaaatattgaaattaatatTAGACGCAGAATTGAAATGCCGGTGATATTGATATTAGGTGCAGTTTTGAGTTGCTGCGCGTCTAATATTAATACTCCGTCAGCCAATTAAGGTGTTTTCGTCCAGATAATAAGGCTTTACGACAAGACGGGgaaaatctttatcaaaagaCTTTCAAAAGAGATCGTACCCGCATACAGTTTTATAGCTGGAAAATTGCGCCAAACGCTTTAATCTGTTCTTATGAGGCTCCGTTTTATTCTGATGCCGGATTCGATAATTTACACGAGAAATGGCAATATAGGATTGATATCATCCTATTTCAAGGGTGTTATTCTATATTAATAGGACACTTGTAAACTGAAGGCCGATCCAGTTTGCTGCAAATCTGATATGGGAAACGCTATCATGAAAACGAGGCTTTATTTTTACGAAATATGAACAAAGAAACCGCTACGGATGTTAACGTTCGGAGAGAGGGTGTAGAAGGTTTTCGCGGAGTGATATTTCCTTCGAAAATACCCGTATGGAATTTTCAATCAGAGTTCTATACTGATATGATAATCAATTGGCCATTGCAAACCCATTCGATCTCACGTAATCGAGTTGGCTCACTGTTATTGTTTTTAGGGATGGTCTAAGAACGTTTATATATACAACTTTTATGGATCTTAGACATACGGGCACCCGGTTCAAGACATACGGGCACGGGGCCAGTTCGATAATTTTGGATTGAAATTTCGCGcaagttgatatttttagtcGAAACACTTGTACAATAGCATATTTCTGGATCCTAAAAAATAGACAATTATAATTCTGATATTCTGATAACAAGTGCCCCTTCCctcttaaatttctttatgccttgaaaaatgatgattttagCTGTGAGTCGTTATATCTCTCTCCACGATCTTTATGTATGTTTTAACCGAAGTCTTCTCTGTCCGGTGTTTGGGATTGTAGAACAGGTTGTTGATTTTGCAAGatcaaaatatgaatcaaTCAACTCTCTTTTTGTGAGTTTAGGGAATATTTTAGTTTCAGAACGAGGATTAAATCCTTCAACTAAGTTGATTAAAGTGGCAAGCTTGTTAAGAATGTTTGATAATGCTCACTGTTCCTATGAATGTTCGAACAACAACCTGAAATGCCAACTCTATGGGCCCTTTGTCTTACTAATCGCCCTTATAGTTCTTCGAATATTTTCGTTTCATCTATTATTCCTCATCCCTTGACGTTTGCGCAGTAATCTACAAAAGAAgccttttgaagaaaagcGGTAGTGACCACAAAGCGAGTATAAATCAGCAACCATATTAGCTCTCGTAATACTGCCCAGTATTATGGATGAAATCAGCTTCAAGAATTTATCGACGAACAATTTCTGATGAAGAcggacaaatattttctcaaatgttCGCAGTTCAAGTGTTGTTATAACAAATCCTTGATAACAGAgtgaaatttggaaattttgccaAGCTGATCGAGTATACAATCTTGTTTTTGTCACGTCGAGAGTACTGAGcaaaatttgtcGTTACTGCTCTTGCCCACGAGAAGACCACTGTATTATGACGTCAGTAAATGATAAAACACAGTTTACTACGAGGCTGGCAGTTGACTCACAAACGTATTACAGCCAGGGAAACGATGACGACAGTGGCTGTACTACCGAGGAGTATGCTTGGACACCTCCTGGACTTTCTCCCGAACTTGTGCGACTATTCATGTCTCGGTTACCGGAAGAAAAAGTTCCATATGTAAATAGTGTCGGGGAGAAATATCGCGCGAGGCAACGGTTACGCCAGCTGCCGCCCCAAGACTCAGATTTCAAACACTGCCATGATATGTCAGAGGAGGAACGGAATGAGCTGAAGCTTTTCCAAGCACAGCGGATACGCGATGCATTAGGTCGTGGCACTGTTCGTGTCATCCCAGAAACAGTCGAAGGAATAACTGGCCTTTGTCAGCAGTGTGGTAAGAGTATACCGCCTGGCGATGTTGCAGTATTTGCTTGGAAAGCTGGCCATGACTGCTGTTGGCACCCAGCATGTTTTTGCTGCACTGTGTGTAATGAGCTTCTTGTTGACCTTACGTATTTTTATCAAGATCGTCGTATATATTGTGGAAGAGATCATGCCGAGCTTTTGAAGCCTAGATGCTCAGCCTGCGACGAGatAATATTCTCAGACGAGTGTACTGAAGCTGAAGGGCGCTTTTGGCACATGAAGCATTTTTGTTGTTACGAATGCAATGCACCACTCGGGGGTCAACGTTATGTCATGCGTGATGACAAGCCAGTATGCTGccaatgctttgaaaaaatgtttgctgaaTTTTGCGATGCATGTGGGGACCCAATAGgAATAGATACTGGGCAAATGGCTCACGGCAGTCAACACTGGCACGCCACCGACAAATGCTTCAGTTGTTACACATGTGGTGTTTGTTTGTTGGGGAAGCCTTTCTTACCAAAAAATGGTGAGATATTTTGCTCCTCCTCTTGTAGTCGCGGGAATCCCCCGAAAAGTAATGTGGTAGCCAAGTACCCGCCAAGGTCGCTTTGCAGAGGGAAGCCTGTTCCACGTTATGAAGATAAATCATCGGGTACCGAGGGATCTGCGTCTGTCACTCCAGTAGTCAGCCCTATCGTAATGCGAAAGCAACCAGAGTTACGTGCGAAATCAAGCAATCGAAGCTCGCTAGACAAATACGGACTAGCTGCTGTGGAGAAGATGTCGGAAGCAATGAATCGACAAGCAGGAACGAATGCAGCGCAAGATAGTGATCGTGACGACGTGAGCTCGAATGGTTCTAGGAAGGAGAAGGAACTGCCAAATTTTGGAGTTAGTCGCCAGGGCTCGAAGCCTGTGTTGCGTGTGAAACCATGTCATCGGCCGAGTCAGAATAAAATCACAGAAGAGGTTTGGATTGATATGGTACCTCCAAAGAAGATTACAACTcgaactgaaaaaaatgacgGAAATTTGTCCGCCGACTCAACTATGCTTAGCGAATATTCAGATGCGGAAAAGTCAATTATATTAGAAAAATCGCTTAGTTTTTCTAAGTCCAGTAACTATTGTCAAGGACAACAAAGATCTAAGAAAAAAGGGCGTCGTAGAGGAGAAGATTCGTATTATTCTGACTACGAAGTTGAAAAGCAGAAGCGATCGCAAAATCGATCACGGTACATCCCCGAAATACCCCCTCCAGAAAGTATTTTATCACATGTGCCTCTCAAGCAAAACACGCACTCAAAATCAATGGAATGTTTAGACTCTAAAATGCGCGTAAAAGGACGCAGAGAACAGCGCttaaaacagacaaaaacaaaatcgGAAACTAACTTATCGTCGTGTGAAAAATCTCTGCGTGTTAAAAATGATGTCACAAACTTTTCTATAAATCCAACCTCGCCATTAAAATCTTCATTCAAAAAGATTGATATTGGACGCGGAAAATCAAGACTTAACCAAGATGAGGATGAATATTTCAGACAACCTCGTGTTCGTGGAATGTTTGGCTCGGATGTTAAACCAAAGCGAATTACATACGTAACGAGAGACGATATGGCTATAGGAGGCTCAAGCACGAGTAAAGATTCGCGTAAAGGGCGAAAAACGAGAAATAAGCAAGAAAGATGTGTCATTTCTTGAACTCAAATGCTGAAAATAGTAAGATATGTAGTGAAAAATAGAGATAATACTCGTTTTTCAAACTGTAATTTAAAAGACTTtgatttcttaaaagaaatctGTCGTTGTATTTGCTTCTTGTGCTTTCTAGGAAATGATGATTAGAATCaatgtgatatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06297 all species →	PET	PET Domain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010442 all species →	Domain	PET domain	Interproscan
IPR033727 all species →	Domain	LIM3 prickle	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR047120 all species →	Family	Prickle/Espinas/Testin	Interproscan
IPR033725 all species →	Domain	LIM1 prickle	Interproscan
IPR033726 all species →	Domain	LIM2 prickle	Interproscan
IPR033723 all species →	Domain	PET prickle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24211 all species →	LIM DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04511	PRICKLE; prickle	-	Wnt signaling pathway	ko04310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.