Gene detail

Detailed information of XP_065058419.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:2643212...2671846
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135686161

ATGTTTGGATCAACTCCGAAAACTCCTTTTGGCACTGGGGGGTTTGGAAACACAAGTTCTAGTTTATTTGGAGCCAAAACACAGGCAACATCAGCTTTCGGAACACCAAGCTTTGGAAATACATCATCTGCATTTGGTGGCGGAACCTCTACTTCTGGTCTCTTTGGCAGTAGCAATGCTGGCAGCAGTCTGTTTTCACAACCATCAACACAGCAATCAACAGGTTTTTCCTTTGGTCAGCAGAAAACTGGTGGGCTTTTTGGGACCAGCACTCAATCTTCAAATTTCTTTCAAACACCACAGACCACCAGTACCTTTGGAGGGTTTGGCACAAATACAGCTGCAGGGACAACCTCCACTGGGTTGTTTGGAAGCAGTTTTGGGACAAGTACTTCAAATCCAATAGGAGGAGGAGGAGGACTCTTTGCTGGAAGTTCAGCTTTTGGCAGTGCTGCACCAAATGGAACAACTGTGAAGTTTAATCCTGTCACTAGTACCGAGAGTGTCAACAAAAATGGCACAAGTATTAATGTGCAAACCAAGTACCAATGTATCACTTCAATGAAAGAATACGAGTCAAAAAGCATTGAGGAATTGCGTTTTGAAGATTACACTGCAGGAAGAAAGACAGGATCAAATGCATCGTTATTTGGCAGCAGCACAAACAAGCAGCAACCATCGTTGTTTGGATCAAGTGCAACAACTGGATTCGGCCAGAATAAAACAGCAACATTTGGAGGATTTGGTCCTACAGCAACTACAAGCTCTTCACTGTTTGGTCAGTCTAACCCAAGTGGAGGAGGTCTTTTTGGCAGCAAGCCGATAGGTACTGGCTCTATTTTTGGTGCAACTACGACAACTACCAATTCTGGGTTCGGTTTAGGAACAAGTGGTGGTTTGTTTGGGCAGACAAGCACTACAGGACCACGTTTTGGCTCAACTGGCACAGCAACTGGGGGACTTTTTGGTGCCAGCACAGGTTTTGGTGCAGCGCAGAAGACATCAACTACTGGCGGTCTGTTTGGGACTAGCACCTCGACGTTTGGTCAGCCACAGTCTGGTGGTCTATTTGGTGCGACGTCTAAACCATTCACTTTTGGAACTACAAGTTCCGGAACATCAACATTTGGAGGGAACACGTTTGGCACCACTGGTGCAACTGGGTTGTTTGGATCGACGGCTACATCGAAGCCAGCATTTAGCTTCAACCCGTCAGGTACCTCTGGGTTTGGGTCCACTCTTGGAAGTTTTGGAACCAGTACGTCACTAGGATCTGGTGGATTGTTTGGTTCAAGCACCGGTACAACAACCGGTGGAGGGTTATTTGGTGGACAGACGAGCACAGGGTTCGGAACCGGACTGGGAGGAACCTCTGGTTTTGGTTCAACTCTCGGTGGTACCACAGCCATAGGAGGTTTAGGTGGACTTGGTGCAGCAACTGGACTAACGGGAAACCAGAATCTTGCTGGGCTCACTGGCGTCAACCAGGCCAGCTTTGCCGCGTTTCAGCAGCAGCAAGTTCTTCAGCAACAACTCAAGGCATTGGCAAATTCTCCTTTCGGTGACTCTCCCCTCTTCAGAAATTTAACGGCTTCAAGAAAAAACGATTCAAATGTTACCGTACCAGTACCTTCGTCTAAGTCTGCTACAGCGTCCTCACATTACAAGGTTTTTTCAAAACCCGCAATTAAGGTCAGAATGAAATCTTCTCCATTCTTGGCCTCAACAAAGACATCTCTATTTGACGGAATTGGTGATGACTATTGCGAAGAAGACGCTAATCTCACCCCAAGGAGAAGTGTGAAGAAACTGGCCATTAAAGGCAAATCGAAGGGGTATTTAAATGGCACTGTGGAAAGCTCTCCACTGCGTTTGCGAAGCACAACTGATGTTGATTATGATGACTTGGTATCAAGGATTCCTGCAATGCCAAGATTGCCAGCCGATAGTCAGTCTGAAAAGGTGCCTACTGAAAATACAGTAACGTCTCCCATATTGAATATTGTCAAAGAGAAAGCTGATGAAAATAAGGAAACATCCGTCAATGAAGCCGATAGCACAGTGGATAGCAGTGATGCGGAGGAGCATTCAGATTCTGATGAAGAAACGGAAAACCCTTGCGGAATTGTTTTGAAAAGGCCTGAATACTACACAATCCCTTCTACCAAAGAATTGAATAAAATGGATCTCAGTGATGGAAAATGCCTTGTCGAGAACTTCATTGTTGGTAGAGAAGATTATGGTGAAGTTAAGTTTTTGGGAACTACAGATGTGAAAGATTTGAATCTGGACAAAATTGTCTTCTTCAGAAGAAGAGAAGCAGAAGTGTACCCGGACGATTATACAAATAAACCAGAAGTTGGAAAAGAATTAAACAAAAAATCAGAAATCAGCCTTCACAAAGTCTGGCCTAATGACAAAACGTCGCATACACCAATAAAGAGTCCAGAACGATTAAAGAAATCCGGATTCATTGAGCGTTTGGAAGAGAAGACATCTGCTCTTGGTGCCATGTTTTTGGACTATAAGCCCGATCAAGGAACATGGGTGTTTCAGGTGGAACATTTTACCCGATACGGTCTCAATGAGCAGCTTTATGAAGAGGACAGCAAGCAGATCATTCTAAAGAAGCTCAAGATGGCTGCTGCACAGAAGGCAGAAGCAATAAGACAAGAAATGGAAACTGAGAAACAGAATAAAATGCTAATCGATGAGGAATCTCAAAAAGAAAAATTAAAACAAAAACAGAGTGCCATCTTGACAAGGCCAATTGTGGAGGGGGAGTTAATGGACGAGGAAACAACCATGGCAGGAGCGGATTCTGATGCAGAAAATGATAAAGAAGATGCATTTTCGACAAGCATTCAAACTGCAAAGATATCTGGCGTAGATCCACAGAGGCTTCAAGGAATGAAAGCGCTTCTCTTTGGTGATGATGATGATGCTGGCGATTTTCTTAGCCCGAGGGAAAAGTCTCTTTTAGCAAACAAATCTATAATAAGTGCTGGGGTTCGAGAGGCTCAGCTGATAGAAAGATTTGACCAAACCAATGGAAGGGTTGACAAGAGCAATTCAACTATTTCCTTGTTTTCTGAAAGACTTCCAAGGGCAGATAGTCCTATGACTGTCACAAGGCGTACAAAGTTATTGAAGACGTCACATTTAGATGAGGAAGAAGGAAAATTTGTAGATTTTGCTGACTCGAATCGGTTGCTTTTCTCCTCGACAACCAGATTTTCTCATAAAGAGGCTCAAGCCCAAATCATTACCGCAAAACGAAAAGCGTTTCTTGTTCCTCGTCGATTATCATGTTTGCAGTCAAAGGAAGCCCATATCAGTGATGCTGGTCTTTCAAATGGCCGCAGAAGTCGTGTTGGATGGGGCCCAAAGCTACATCTGTTTCATGCCGGTGGTCCCCTAGGGAGTGAAATTGATGGTCTCAAAAGTGCCACAAAAGAACAGGCCGTGTTGCTTGGTTTTGATGGTAATGCCTCGCGCGCCTTGCCTTCCTCCCCTTTCACGGTTACAGTGGAAAAGATTTGCATCGGTGATGAAAAGGATGATCATTCTTATCTTGTTGAATGCCTTCAAAATGTCTTGAAACATAGTAAAGTGACTGCTGAAAACGAAGAACCTCCTTTCGTTGAAACTGTTGAGGGGGTAAACGCTCTGCACGCCTTTGCTGAATTAACCGAAAAATATCTAAATAATAAAGATGCCATGGATTATGCAAACATACAGTACCAACATGCTGTTGTTTGGGATCTCGTCAAAGCTCTCTGGGGGCGTCTCGAAAATACAGACCATGTAAAACTCTCCTCCTACCAGTCTCAAGTGCACAGAAGACATGCAGTTTCAAAATGGTTGTCAAAAATTGTCGAGAAAGAAATCAAGAAGGAAATTGATAGTTTAAAGACAAAGGATTCAGGCCATCTTGATGCGATATTCAGTCTTCTAAGTGCTCGGAAAATCCGCGAAGCTTGTGAGCTTGCCTGTCAGAACCGCGAATACCGCCTTGCCTTGCTACTTTCTCAAGCATCCGGCGATTTACAAATGAAGCATTTGCTCAGAAAACAGCTGGATGAATGGAAAACGTCATTGGCTGACAAATTTATGAATGCTTCGAGGCTGAAAATTTATCAGCTGTTATCTGGTCTGATGGTTTGGATGTCTGCCCACGGTGACCTCAACCTCTGCGAGAATCTTGACTGGAAGCGATCTTTCGCTTTGCATTTATGGTTTTTCTGTTCAACAACATCTTCGATTTCAAAAGGTTTGGAAGAATATAGGAATGCTTTCAAGGGAACAGACACTTACTCGCCTTACGCAGCGCCTCCAAAGCCATGCTATGCCACAGACAGATGCGCAATGGTTGACAATGAAGACCTTGAAGCACAAAGACAACCCAAAGACATTTGTTACCATATTTTGAAATTATACAGCAAAAGATCACATCGCTTAGAAAGAGTTCTGTGTCCCAATACCCACACAGAAGATCCTCTTGACTATCAGTTATGCTGGCAATTGCAGCAAGTTTTAGAGTCATTGGGCTACACCCACCTGTCAGAATCCTACTGTGGTCTCATTCAAACAAGCTTTGCATCACAATTGGAGACTTATGGCCTGTGGGAATGGGCAGTTTTTGTCCTTTTGCATATCAAAGAAAATAAAAGACGCGAAACTGCTGTTCGAGAGGTTTTATCAAGACACTGCTGCATACAAGAAGATTTTAATAAGCTCACAGAGAAGGAGCTCTTGCTGATCAAGTCCTTGAAAGTACCTGCAACATGGATTTATGACGCAAAGGCCCAGCATGCTCGCTATAGTGGAAAAACCCAAGACGAAACATTTTATTTACTAAAAGCAGAAAGATGGAGTGACGCACATGAGGTGCTTGTGAAATATCTGGCAGCAGATGCAATCATTGATGGTGACTACAGATTTTTGAAAGAGGTCTTATTAGAACTGACACTACCTGAGCGTATGTGCACGATTAAGAACTGGAAGCAAGCGGGACAGGTTTTTCTGGATTACATTCTATTACGTGAAAAGCTTTTGCAACTTGAAAAGGGAACCTTGGTTGTAACTGCATATAATCTAGAGGACTTGCGTTGTGACGTCACCGCTTTAATTAATATGATCAGCAACATGAAAGCGAATTCTTCCAAAGAGAGGCTGGCGCATGCTGAAATGGGCAAGACTGCCTCAAATCTATTGAAGATCATCATTTGTGAATTAGCAGAGCAGGGAGTTCAAGTTAGTGACGAGGAAACGGAAATTGTAGACAAGAAATACTCCTGGTCCTTGTGTCAAGTGGCTCCTTTTATTGCGACGTTGCCGCTGCCGCCAGACTATATACAACAAGAACTCGAAGAGTTTGTTTGTAACACTGAGAGAAACCTGCCAATGTCGCCTTGA

Transcript

rna-XM_065202347.1

CTAGTGCCATGCTCCATTTTGAAAACCGATTCTTGGCGGTTCGGGTAAGTCTAAAGCAGATATGTCACTTTTCTAGGAagacaatttttgattgaacaGTTATTCGCTTTTATCGTTCTACGAGgagttacaaaatttgaaaacgcattgaagaacaaataaagcaaaacaaagtttccCAAAACCAACCATATAGCGGTGCCCGACTTGCTTTGGATAGCAAGACAGGAAGCTGTCATGTTTGGATCAACTCCGAAAACTCCTTTTGGCACTGGGGGGTTTGGAAACACAAGTTCTAGTTTATTTGGAGCCAAAACACAGGCAACATCAGCTTTCGGAACACCAAGCTTTGGAAATACATCATCTGCATTTGGTGGCGGAACCTCTACTTCTGGTCTCTTTGGCAGTAGCAATGCTGGCAGCAGTCTGTTTTCACAACCATCAACACAGCAATCAACAGgtttttccTTTGGTCAGCAGAAAACTGGTGGGCTTTTTGGGACCAGCActcaatcttcaaatttctttcaaacacCACAGACCACCAGTACCTTTGGAGGGTTTGGCACAAATACAGCTGCAGGGACAACCTCCACTGGGTTGTTTGGAAGCAGTTTTGGGACAAGTACTTCAAATCCAATAGGAGGAGGAGGAGGACTCTTTGCTGGAAGTTCAgCTTTTGGCAGTGCTGCACCAAATGGAACAACTGTGAAGTTTAATCCTGTCACTAGTACCGAGAGTGTCAACAAAAATGGCACAAGTATTAATGTGCAAACCAAGTACCAATGTATCACTTCAATGAAAGAATACGAGTCAAAAAGCATTGAGGAATTGCGTTTTGAAGATTACACTGCAGGAAGAAAGACAGGATCAAATGCATCGTTATTTGGCAGCAGCACAAACAAGCAGCAACCATCGTTGTTTGGATCAAGTGCAACAACTGGATTCGGCCagaataaaacagcaacaTTTGGAGGATTTGGTCCTACAGCAACTACAAGCTCTTCACTGTTTGGTCAGTCTAACCCAAGTGGAGGAGGTCTTTTTGGCAGCAAGCCGATAGGTACTGGCTCTATTTTTGGTGCAACTACGACAACTACCAATTCTGGGTTCGGTTTAGGAACAAGTGGTGGTTTGTTTGGGCAGACAAGCACTACAGGACCACGTTTTGGCTCAACTGGCACAGCAACTGGGGGACTTTTTGGTGCCAGCACAGGTTTTGGTGCAGCGCAGAAGACATCAACTACTGGCGGTCTGTTTGGGACTAGCACCTCGACGTTTGGTCAGCCACAGTCTGGTGGTCTATTTGGTGCGACGTCTAAACCATTCACTTTTGGAACTACAAGTTCCGGAACATCAACATTTGGAGGGAACACGTTTGGCACCACTGGTGCAACTGGGTTGTTTGGATCGACGGCTACATCGAAGCCAGCATTTAGCTTCAACCCGTCAGGTACCTCTGGGTTTGGGTCCACTCTTGGAAGTTTTGGAACCAGTACGTCACTAGGATCTGGTGGATTGTTTGGTTCAAGCACCGGTACAACAACCGGTGGAGGGTTATTTGGTGGACAGACGAGCACAGGGTTCGGAACCGGACTGGGAGGAACCTCTGGTTTTGGTTCAACTCTCGGTGGTACCACAGCCATAGGAGGTTTAGGTGGACTTGGTGCAGCAACTGGACTAACGGGAAACCAGAATCTTGCTGGGCTCACTGGCGTCAACCAGGCCAGCTTTGCCGCGTTTCAGCAGCAGCAAGTTCTTCAGCAACAACTCAAGGCATTGGCAAATTCTCCTTTCGGTGACTCTCCCCTCTTCAGAAATTTAACGGCTTCAAGAAAAAACGATTCAAATGTTACCGTACCAGTACCTTCGTCTAAGTCTGCTACAGCGTCCTCACATTACAAGgttttttcaaaacccGCAATTAAGGTCAGAATGAAATCTTCTCCATTCTTGGCCTCAACAAAGACATCTCTATTTGACGGAATTGGTGATGACTATTGCGAAGAAGACGCTAATCTCACCCCAAGGAGAAGTGTGAAGAAACTGGCCATTAAAGGCAAATCGAAGGGGTATTTAAATGGCACTGTGGAAAGCTCTCCACTGCGTTTGCGAAGCACAACTGATGTTGATTATGATGACTTGGTATCAAGGATTCCTGCAATGCCAAGATTGCCAGCCGATAGTCAGTCTGAAAAGGTGCCTACTGAAAATACAGTAACGTCTCCCATATTGAATATTGTCAAAGAGAAAGCTGATGAAAATAAGGAAACATCCGTCAATGAAGCCGATAGCACAGTGGATAGCAGTGATGCGGAGGAGCATTCAGATTCTGATGAAGAAACGGAAAACCCTTGCggaattgttttgaaaagGCCTGAATACTACACAATCCCTTCTACCAAAGAATTGAATAAAATGGATCTCAGTGATGGAAAATGCCTTGTCGAGAACTTCATTGTTGGTAGAGAAGATTATGGTGAAGTTAAGTTTTTGGGAACTACAGATGTGAAAGATTTGAATCTGGACAAAATTGTCTTCTTCAGAAGAAGAGAAGCAGAAGTGTACCCGGACGATTATACAAATAAACCAGAAGTTGGAAaagaattaaacaaaaaatcagaaatcagCCTTCACAAAGTCTGGCCTAATGACAAAACGTCGCATACACCAATAAAGAGTCCAGAACGATTAAAGAAATCCGGATTCATTGAGCGTTTGGAAGAGAAGACATCTGCTCTTGGTGCCATGTTTTTGGACTATAAGCCCGATCAAGGAACATGGGTGTTTCAGGTGGAACATTTTACCCGATACGGTCTCAATGAGCAGCTTTATGAAGAGGACAGCAAGCAGATCATTCTAAAGAAGCTCAAGATGGCTGCTGCACAGAAGGCAGAAGCAATAAGACAAGAAATGGAAACtgagaaacagaataaaatgCTAATCGATGAGGAAtctcaaaaagaaaaattaaaacaaaaacagagtGCCATCTTGACAAGGCCAATTGTGGAGGGGGAGTTAATGGACGAGGAAACAACCATGGCAGGAGCGGATTCTgatgcagaaaatgataaagaagaTGCATTTTCGACAAGCATTCAAACTGCAAAGATATCTGGCGTAGATCCACAGAGGCTTCAAGGAATGAAAGCGCTTCTCtttggtgatgatgatgatgctgGCGATTTTCTTAGCCCGAGGGAAAAGTCTCTTTTAGCAAACAAATCTATAATAAGTGCTGGGGTTCGAGAGGCTCAGCTGATAGAAAGATTTGACCAAACCAATGGAAGGGTTGACAAGAGCAATTCAActatttccttgttttctgAAAGACTTCCAAGGGCAGATAGTCCTATGACTGTCACAAGGCGTACAAAGTTATTGAAGACGTCACATTTAGATGAGGAAGAagGAAAATTTGTAGATTTTGCTGACTCGAATCGGTTGCTTTTCTCCTCGACAACCAGATTTTCTCATAAAGAGGCTCAAGCCCAAATCATTACCGCAAAACGAAAAGCGTTTCTTGTTCCTCGTCGATTATCATGTTTGCAGTCAAAGGAAGCCCATATCAGTGATGCTGGTCTTTCAAATGGCCGCAGAAGTCGTGTTGGATGGGGCCCAAAGCTACATCTGTTTCATGCCGGTGGTCCCCTAGGGAGTGAAATTGATGGTCTCAAAAGTGCCACAAAAGAACAGGCCGTGTTGCTTGGTTTTGATGGTAATGCCTCGCGCGCCTTGCCTTCCTCCCCTTTCACGGTTACAGTGGAAAAGATTTGCATCGGTGATGAAAAGGATGATCATTCTTATCTTGTTGAATGCCTTCAAAATGTCTTGAAACATAGTAAAGTGACTGCTGAAAACGAAGAACCTCCTTTCGTTGAAACTGTTGAGGGGGTAAACGCTCTGCACGCCTTTGCTGAATTAACcgaaaaatatctaaataatAAAGATGCCATGGATTATGCAAACATACAGTACCAACATGCTGTTGTTTGGGATCTCGTCAAAGCTCTCTGGGGGCGTCTCGAAAATACAGaccATGTAAAACTCTCCTCCTACCAGTCTCAAGTGCACAGAAGACATGCAGTTTCAAAATGGTTGTCAAAAATTGTCGAGAAAGAAATCAAGAAGGAAATTGATAGTTTAAAGACAAAGGATTCAGGCCATCTTGATGCGATATTCAGTCTTCTAAGTGCTCGGAAAATCCGCGAAGCTTGTGAGCTTGCCTGTCAGAACCGCGAATACCGCCTTGCCTTGCTACTTTCTCAAGCATCCGGCGATTTACAAATGAAGCATTTGCTCAGAAAACAGCTGGATGAATGGAAAACGTCATTGGCTGACAAATTTATGAATGCTTCGAGGCTGAAAATTTATCAGCTGTTATCTGGTCTGATGGTTTGGATGTCTGCCCACGGTGACCTCAACCTCTGCGAGAATCTTGACTGGAAGCGATCTTTCGCTTTGCATTTATGGTTTTTCTGTTCAACAACATCTTCGATTTCAAAAGGTTTGGAAGAATATAGGAATGCTTTCAAGGGAACAGACACTTACTCGCCTTACGCAGCGCCTCCAAAGCCATGCTATGCCACAGACAGATGCGCAATGGTTGACAATGAAGACCTTGAAGCACAAAGACAACCCAAAGACATTTGTtaccatattttgaaattatacagCAAAAGATCACATCGCTTAGAAAGAGTTCTGTGTCCCAATACCCACACAGAAGATCCTCTTGACTATCAGTTATGctGGCAATTGCAGCAAGTTTTAGAGTCATTGGGCTACACCCACCTGTCAGAATCCTACTGTGGTCTCATTCAAACAAGCTTTGCATCACAATTGGAGACTTATGGCCTGTGGGAATGGGCAGTTTTTGTCCTTTTgcatatcaaagaaaataaaagACGCGAAACTGCTGTTCGAGAGGTTTTATCAAGACACTGCTGCATACAAGAAGATTTTAATAAGCTCACAGAGAAGGAGCTCTTGCTGATCAAGTCCTTGAAAGTACCTGCAACATGGATTTATGACGCAAAGGCCCAGCATGCTCGCTATAGTGGAAAAACCCAAGAcgaaacattttatttactAAAAGCAGAAAGATGGAGTGACGCACATGAGGTGCTTGTGAAATATCTGGCAGCAGATGCAATCATTGATGGTGACTacagatttttgaaagaggTCTTATTAGAACTGACACTACCTGAGCGTATGTGCACGATTAAGAACTGGAAGCAAGCGGGACAGGTTTTTCTGGATTACATTCTATTACGTGAAAAGCTTTTGCAACTTGAAAAGGGAACCTTGGTTGTAACTGCATATAATCTAGAGGACTTGCGTTGTGACGTCACCGCTTTAATTAATATGATCAGCAACATGAAAGCGAATTCTTCCAAAGAGAGGCTGGCGCATGCTGAAATGGGCAAGACTGCCTCAAATCTATTGAAGATCATCATTTGTGAATTAGCAGAGCAGGGAGTTCAAGTTAGTGACGAGGAAACGGAAATTGTAGACAAGAAATACTCCTGGTCCTTGTGTCAAGTGGCTCCTTTTATTGCGACGTTGCCGCTGCCGCCAGACTATATACAACAAGAACTCGAAGAGTTTGTTTGTAACACTGAGAGAAACCTGCCAATGTCGCCTTGAATATTCGTAGGGAATGGTACATGGTAGAAGACCTATTGGTTCTGCGATAAATCTTCAAAGTTAATTGTACCTTATTTTATAATTGTGAGTAGATAGGTAGAGGTAGTGTtgcaataaagataaaaagttgtGTCGGTAACTTTCTGTGGTATATAAGCAGTGTAATTGTCAAGTGAAATTCTTGGTAAATATGATCCTAGTCTGTATGTAAATGTCGAAAATTAAGTCGCATTTAGTAGAGTGACTTTTGCCAGCGCTAGGTAACCCTCGTTGCATCATGTGCATATAGAGATTGATAGTCAAAAGTCCTTGCTAAAGTATTGACTCATTAAATGTATAATATTATTTCAGCAAATTGAACCCATCGCAGAAACTGAATTAACTTTAgttgtattttgtttaatttctgtatttcttattttgtcCGTTGCTCTATTTTTGCTAAGATGCATTTATAGTATGTCCATGTTTGTCGAACACATTACAACCCTTGGCCTAGCAGCTTAAGTGCAGTTATAATTAGCAGGAGGAGtggaaaatttttcgatttttcatCATGAACCACAAATAATCAGCTAGATAGGTTATTCTATAAAGATCCattgtcaaaattatttatttacacAATGCCCGTAATTATCCACTCATGACTTTCACCTTTGCGAAGCTTAATGGAAAACATTTGTTGTCAATGGGAAGACTGGATACTTTTGCACAGATGTGGACACTTTGTTAAATATTAGGGtggcggggggggggggggggggggcaatcCTGTTTatttgataagatgacgtcaAATTTcccccattgttttagaacaaaagttCATTGTCCTTCAAAATATTAGAGGCGACCGCTCCCtcgcccccctcccccaggtgtccgccactgctttTGCAGACATTAGCCTTGCTGTTTTGATGTAATTCATAGTCGTCTCTTGATACTTAAACGTTTTCTAGACATTAGAAGTCTATTCCGAGACTGTTATTATTGAGAAGATCTGTGTATCATCATAGCTTGTAAGAGGTCATATGCTTATTGTCAATCTTTATTTAAGAATACGACAAGAAAGGTTTTTTCTGCTCCGTTCTTATCTGCATTGATTTCACAAGCCACGTTCTGCAGCCGTCAACTTTCAGGGACACTGAAGTTATAGTTGTTTTGAATCTATTTTGTATCTATAAGAAGCATgctttattgcaaaaagttaaGGATAGGAGTGAAAGATACACATTCAAGATGATTTATAGCAGCTGTTAATCGCAGTGTGAAATCTCACTTCCTTAAcaaaaagtaataaattttctacatAAGTATAGATACCTAAGATAAAATAATGTCGGTTACATT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002143 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04096 all species →	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF21240 all species →	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan
PF12110 all species →	Nup96	Nuclear protein 96	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007230 all species →	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR036903 all species →	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR021967 all species →	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan
IPR037665 all species →	Family	Nucleoporin peptidase S59-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198 all species →	NUCLEOPORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0000973 all species →	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0034398 all species →	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14297	NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Rhopilema esculentum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Rhopilema esculentum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →