Gene detail

Detailed information of XP_065058477.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:4683430...4707675
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135686217

ATGGATAAGGCGATAGAAGAACAGATCAATGCTGTTACAACACATGATACACCTAGGTCCATTGAAGTTAATCAGAAAAGCCCAGAAAGTAGTAGGACTTTTTTAGAAAATTTCAGTCCAAAGCCATTTATTAAGAATAAGCCCCAGCTGCCAAAAAAGCCAGCATTTCTTTTTAAGTCTAATATTTCAAATCAGGGATCTAGCCCTGGTCAAAATGAAAGGTATGCTTCTCAATTTGAGAATACTAGGCATGAAGAAACTGATAAGAAAACTTCTTTGAATTGTAAAGATGCTGGATTCTCAAGCAAGGGAGAAAATGGAGACAAAATTGATTATGGGAATTTATCTTCTTATAAGGACACAACAGAGGGAAGAATATTTCCAATATTGGGTAGAAATGGTAAGGGAAGCAATGGTATTTATGGCTTGAATACTGAATCAAGTAATGTTTTTGATGATGTAGTGACAAAAAGTGAAATGGAAGATATGGAAAAGGACCTCAATTACACAGACAAGGAGGTTTGTGTATCACAACAGGTTGGCAATGCTATGAGTGACAGCTCAGTATCAATGCAAGATTCTAAACTCTTGACTGATAATTTTGATTTTGTACAGGAAGATGTTTTCAATTGTTTTGAAGACATAACAAAAAATCCAGATCAAAAATTTTCTTGTGATAAGGAAAAAGAATTTCCTTTGAGTGGTATATCACAGAGAGATGAAATATTGTTGGCATATGATAGAACATATGAAAATGCTTCAGATCAAAAGAATACCAATTGCAGAAATTCTGTTGCTGTGAATAATAAACAAGAAAAAGGGACAATTTTGAAACCTCGACCATCCAGACCACCACCTCCACCCCCTCAAAGACAAAAATACCAACAATTAAGTGATATAAATTTGGATGAAAAGAGCAATGCTTTAAACCTGCTTGATGATTTCAGTGAGCAAAAGATTTTTGGTTTCAACCAGAAAACAACTAACTATGGAAAAGAAGATAAACTTTTAGAAAATAATGTGAAATGTGAAACAGTTACTTGTGATAAAGATGGTGTTCAAGAAAAGGAACCTTCAAAGGAATGTATTGACAAAAAGACTATTGGGAAAGTGGATGATGAAATACTCACGATGAAGGACAAAAATGATGAGCAGGGAAAAATTGGACCTGTGGGGGAGAGTCTAAACTTACCACATTTAGATGGAAAGCATTTTGAAAGCGTTTGCTCGAGAATTTCTGGTCAAGGAGCAGTTCCAACTTCGCCGGTTATGAAGAGAGAAAATAGGGTTGCGATAAAAAACAAAAAAGAGAATCGTAAAAGCTGCCCTCCCCCAGATACCACAACTGTAGAAGCGAAGGAAGAAATTAAAGAAACTGTACTAAATAAATGGAAATATAGAAGCTTTGCTGTTGACAGTCAAAACAAGAGGCAAAATTCTTCCAAGCCAGAGTTGTTACAGCGACTACAAGAGCAACGAAAAAAGTCAGAGGAAAAAGGACACGAAAGCGCGACAACTTTTTCAAAGCCAAAGTCACTGCCAGCGATTAAGGATGATGTTGATGAGGAAATGGAGGATGCCGTTTTCTTCGACTACGTTTTGGTTGTTAAACTTCGAAACAGTGAAAATGGATTAGAGCCATACATTTCATTCAGATTTCCACCAAAGCAAAAGTATGATAAAGAGATTGACGAACGCGTTGCAAGCATTCCTCAGTTTTGTTTCCCCGACCTAAAAGCTGGAATGAGGGCAGATAATTATTTAGAGCATCATGTAGGGTTTGCATCAAGCGAAACTTTCTCTTTCGTTTTAACTGACATGATGGGGCAGCGACTCTTTGGATATTGTCGTCAAATCCAGGTGAAAGAAAGATCACGGGAAAAATCTTCAGCAGCCTTGTTACCTGAAGTGTATTGCATCGTTAGTCCATACGGACTATTTGGTTTGTATTCCCAGATTCTCGATGAAGTTGAACAGCAGTGTGCTTTTTCGTCTTCTCATGTTTTTGTTTTTCTGAAAGCGGTTCTTTCACATTCATTACCAAGAGCGGGTGGAACTATACAAGTTTCATTTTATTCGGGTGACTCTGTAGGCCTAAAATCTTTAAAATTGAAGAGGGAAGCTGACTCATCCATCCACGAACACGTCGATTTAAGCCTTTTGTTTGAAAGACTGCCTGTTTCTGTGATTTTGAGTACATTGAGCGCTCTAATGTTGGAGAGAAGAATCATCCTAGCGTCAACACAGCTAAGTTTGCTCTCTGCCTGCTGCCATGGATTTGTTTCGTTACTATATCCGTTCATCTGGCAGCACACATATATCCCCGTTCTTCCCTGTACCCTCGTTGATATGTGTTGTTTGCCGACCCCGTATCTTCTTGGAGTTCTTTCAGGCTGCTTACCAGAAATCGAGGACCTGCCTATTGATGAAGCTATCATTGTTAATCTTGATCAGAAAAGAATTCTGAGAAACACTGATATGGACAGTAAATGCAGTTTACCAAGTCAGATTGAGAATCAGATTGAGAGTGGTTTGACCGTAGGTCTGGCAGCAAGCAAGTCATTGGAAAATGATAAAAAGAAAAAGAATACAATGATAACTGAAGTTTTTGTCCGATGCGCGTATTTAAATCTATTGGTGAAGCGAAATATTTTAAAACCATTGACACGCATCATCTCAGACCTTTTTGAGTTGTAG

Transcript

rna-XM_065202405.1

TCAATTTCATAGCAGAAATCGGGAATTCAATTACTGAGAAACTTACTTTTATCTTCGTGAAGTGCTGAGATATTTCTGTTAATATGGAGGTCGGAGAAGCTTCTCTTCTTGATTAGCCTTGCTACTGAGGGACTACCTTCTGAAAGATTCCCCGAACATATCAGTTCATATCCCATTGATACTTTTGCTTCcttcatttattcttttccTATTCAGCATATAAATCCctgtaatttaatttttttgtttcttgtacAGGCACATTGTAATTGTGGAAATGTATTTTGTCGCCTGAACCAGATCAAAACTGAGAAACGAGAGTTCTAAGAATCTGTAGAAAGCcaaataacacaaaaaatagCTTTACTTGAccatatttttagaaaaaggcATGGATAAAACTCGCTGTTCTCGCTCCGTACTCCTATTCTAATAGATTTATGTCCGCAAACGAAACGACTTCCCAACTCGCAACTCGCAGATTGAGCATCTTGGATTGCATTGTTGCTATGGAAGGTCATTCAGGTCATTGTTGCTAATCGAAGGTCATTTAGGACAAAGTAACATGAAGTACCTATTTCCCACGGACTGTTGTTTCCGTGAATGCTTAACCATTTGTGCCCCTACTCATGGAAACCAGCAAAGGTCTTGGTTGACAGCAAAGGAAATTGAAGGATCTTTCTTGGATCATATTTGATGTTGTGAATATTTTAAGTATGCTTCATTTAGACATACAGCCGGTGAGCTCTTGCAAGACTTTTGTCAGCCAGAATGGTGTATTTTATTACCTGTGAACCTGGTTGAATTATGGATAAGGCGATAGAAGAACAGATCAATGCTGTTACAACACATGATACACCTAGGTCCATTGAAGTTAATCAGAAAAGCCCAGAAAGTAGTAGgacttttttagaaaatttcagtCCAAAGCCATTTATTAAGAATAAGCCCCAGCTGCCAAAAAAGccagcatttctttttaagtctaatatttcaaatcagGGATCTAGCCCTGGTCAAAATGAAAGGTATGCTTCTCAATTTGAGAATACTAGGCATGAAGAAACTGATAAGAAAACTTCTTTGAATTGTAAAGATGCTGGATTCTCAAGCAAGGGAGAAAATGGAGACAAAATTGATTATGGGAATTTATCTTCTTATAAGGACACAACAGAGGGAAGAATATTTCCAATATTGGGTAGAAATGGTAAGGGAAGCAATGGTATTTATGGCTTGAATACTGAATCAAGTAATGTTTTTGATGATGTAGTGACAAAAAGTGAAATGGAAGATATGGAAAAGGACCTCAATTACACAGACAAGGAGGTTTGTGTATCACAACAGGTTGGCAATGCTATGAGTGACAGCTCAGTATCAATGCAAGATTCTAAACTCTTGActgataattttgattttgtacaggaagatgttttcaattgttttgaagacataacaaaaaatccagatcaaaaattttcttgtgatAAGGAAAAAGAATTTCCTTTGAGTGGTATATCACAGAGAGATGAAATATTGTTGGCATATGATAGAACATATGAAAATGCTTCAGATCAAAAGAATACCAATTGCAGAAATTCTGTTGCTGTGaataataaacaagaaaaagggACAATTTTGAAACCTCGACCATCCAGACCACCACCTCCACCCCctcaaagacaaaaataccAACAATTAAGTGATATAAATTTGGATGAAAAGAGCAATGCTTTAAACCTGCTTGATGATTTCAGTGAGCAAAAGATTTTTGGTTTCAACCAGAAAACAACTAACTATGGAAAAGAAGataaacttttagaaaataatgtGAAATGTGAAACAGTTACTTGTGATAAAGATGGTGTTCAAGAAAAGGAACCTTCAAAGGAATGTATTGACAAAAAGACTATTGGGAAAGTGGATGATGAAATACTCACGATGAAGGACAAAAATGATGAGCAGGGAAAAATTGGACCTGTGGGGGAGAGTCTAAACTTACCACATTTAGATGGAAAGCATTTTGAAAGCGTTTGCTCGAGAATTTCTGGTCAAGGAGCAGTTCCAACTTCGCCGGTTATGAAGAGAGAAAATAGGGTTgcgataaaaaacaaaaaagagaatcGTAAAAGCTGCCCTCCCCCAGATACCACAACTGTAGAAGCGAAggaagaaattaaagaaactgtACTAAATAAATGGAAATATAGAAGCTTTGCTGTTGACAGTCAAAACAAGAGGCAAAATTCTTCcaagCCAGAGTTGTTACAGCGACTACAAGAGCAACGAAAAAAGTCAGAGGAAAAAGGACACGAAAGCGCgacaactttttcaaagCCAAAGTCACTGCCAGCGATTAAGGATGATGTTGATGAGGAAATGGAGGATGCCGTTTTCTTCGACTACGTTTTGGTTGTTAAACTTCGAAACAGTGAAAATGGATTAGAGCCATACATTTCATTCagatttccaccaaagCAAAAGTATGATAAAGAGATTGACGAACGCGTTGCAAGCATTCCTCAGTTTTGTTTCCCCGACCTAAAAGCTGGAATGAGGGCAGATAATTATTTAGAGCATCATGTAGGGTTTGCATCAAGCGAAACTTTCTCTTTCGTTTTAACTGACATGATGGGGCAGCGACTCTTTGGATATTGTCGTCAAATCCAGGTGAAAGAAAGATCACGGGAAAAATCTTCAGCAGCCTTGTTACCTGAAGTGTATTGCATCGTTAGTCCATACGGACTATTTGGTTTGTATTCCCAGaTTCTCGATGAAGTTGAACAGCAGTGTGCTTTTTCGTCTTctcatgtttttgtttttctgaaaGCGGTTCTTTCACATTCATTACCAAGAGCGggTGGAACTATacaagtttcattttattcgGGTGACTCTGTAGGcctaaaatctttaaaattgaagagGGAAGCTGACTCATCCATCCACGAACACGTCGATTTAAgccttttgtttgaaagactGCCTGTTTCTGTGATTTTGAGTACATTGAGCGCTCTAATGTTGGAGAGAAGAATCATCCTAGCGTCAACACAGCTAAGTTTGCTCTCTGCCTGCTGCCATGGATTTGTTTCGTTACTATATCCGTTCATCTGGCAGCACACATATATCCCCGTTCTTCCCTGTACCCTCGTTGATATGTGTTGTTTGCCGACCCCGTATCTTCTTGGAGTTCTTTCAGGCTGCTTACCAGAAATCGAGGACCTGCCTATTGATGAAGCTATCATTGTTAATCTTGATCAGAAAAGAATTCTGAGAAACACTGATATGGACAGTAAATGCAGTTTACCAAGTCAGATTGAGAATCAGATTGAGAGTGGTTTGACCGTAGGTCTGGCAGCAAGCAAGTCATTGGAAAATGataaaaagaaaaagaatacaaTGATAACTGAAGTTTTTGTCCGATGCGCGTATTTAAATCTATTGGTGAAgcgaaatattttaaaaccattGACACGCATCATCTCAGACCTTTTTGAGTTGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR051942 all species →	Family	DENN domain-containing protein 2	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15288 all species →	DENN DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_065058477.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065058477.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.