Gene detail

Detailed information of XP_065058607.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:14324317...14340063
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135686330

ATGGCGGACGAAGGTGACAGTTTATCAAATGCTGAGCTACGTGAGCAGCTGATGTATTATGGTGTTAAGCACGGTCCTATAACCGCAACAACTAAAGCATTATTGCTGAAAAAGCTAAATGAAGCAAAGTCAGGTGGCCGTAGATCGTCTCCCAAAGTAGACAAGGTGAAAAAGCGCAGGTCAATTGCAACCAGCAATCCGTCACAACAGAGAACAAAGTTAGCTGGCTTCTCAAAAGAGGAAGATGAAATTGTCATTAAAAAGTCACAAGTCTGCAGAATTGATTCAAATGATAGCAACAACTCAGAGGAAAAGGTAACCGTTACAAGAAGGAGAAACAGCTTTGATTTAGAGGAAGAACACGACATAGTGCAAAAGAGGAAAACGAAAACAGATCAGAGACAAAGCCCTGCAAGCTCATCTAGCTCTAATTCGACTATTGGAAATGCGTCATTGACAGCAAGATTGCAAGGGAAGCCTAAGGGGCAGTATCAAGCTGCTAGAGACCAAACTGATAGTATAGCTGAGGAATCAACCAAAGAAGACAATATTGATAATGGACGAGATGATGAAGAACTGGAGTTGGCATTTGCATCCAACAACAACCTCATGAAGAGTTGGAGAGGCCCAGTATTTATGATATTTGTAATTGTCTTGCTAATATGTCTTGTTGGATCATATGCAAGCTTGTGGAGCAACAGAATGTCAGAATGGCCTGCTCTTCCAGAAATAAAAGATGGATCAACATTTGGAAAGGTCAGCAGGGAGGAAGTATTCAAGATGCTTCAATGTTTACATGAAAAACTATCCTTGTATGCAGGAGAAAAGGAATGTGGCTACTCAAATGTTACGGTAGAGCTCAATGGCGGCCAACTTGGACCTTTTTTCTCTTCAGAATGTTCCTATCTTTTGGAGGAAAAACTCATTGACTATGAACATCTCTCTTCGCAAGTTGTGAATTTTGCCGTCGACAAGATGTATTCGCAGTTTTTCAGAGTGGTTTATGAGCGAGGGACAATGGGGGAAATTACGATTGAAACCCTTAGCATGGTCACACTATCGTCGAAGACCGCCGTCAAACCGTTGATATGTCGTCTAAAGCAGGCTTCACAGATGCTGACGAAGTACATTTTAGGAATCGTTCTTGGCTTTGGGCTTTTGCTTGCTGCCTACTATGTCATGAAGCGACGCTGGATGATGGATGATGAAGACACCAGGCTTATGTTCGTTTATGTTGAACGCATCATCGAAAGCCTTCGTAGGCACCACGAGGCTTGTGAACATGACAGGGAGCTACCACCTTATCTCCCAATCCCACACGTCCGAGATATGCTTATTCCTCCACGAGAAAGAAAACAAAAATCTAGAGCGTGGAAAAAGGCTGTTGATTTTCTCAGCTCAACCGACGCAAGGATCCGAGTTGAAACGCAGAGAATTGCGGGAGAAGACTTTGAAGTGTGGAGATGGATTGGGGTTATGCCGTCAGACAAGCATGTCAGTGGGGCCAGCAACCATTTGGGTCCTGAAGTTGAAAGAGGGAAGTTCTGGCAAGGGCAAGCTTTCGATAAGCTGGAAAAGGTTGTGCGAATGCCGATCATCACTCCAACACCATGCTTGAAGATCAGATATCTTCACGGAGGCCCTGTTGAGAAAGAGGAAGGATGGGAACGTCACGTCCGCGATGCTTTGCTTGAAAAATGCAACGACGGGGGAGCTCGCATTCTCCATGTTTATGTCGATGTCAAGTCTTCTGAGGGCTGCGTTTATGTCAAATGTGATTCTCTGGAGTCAGCAGGAAAGGCCTTTCGAAGCGTTTACGGCAATTGGTTCGATGGTCGCCTGGTGATAGTTAAATTTGTTACATTAGCCCGTTATCATCAAAGATTCCCTGATGCCTTAACACGCATACGGCCTTTAAATGTTTCTGGGGATTTCCCTTCTTCGCTGAGCTGGAAAAGCCAGAACGATGAACCAGAAACATGGATCAGTCGGTCGTGA

Transcript

rna-XM_065202535.1

GCATCCGCGCCGCGGGCCTTGCACACAAGTTAAAGATGGCGGACGAAGGTGACAGTTTATCAAATGCTGAGCTACGTGAGCAGCTGATGTATTATGGTGTTAAGCACGGTCCTATAACCGCAACAACTAAAGCATTATTGCTGAAAAAGCTAAATGAAGCAAAGTCAGGTGGCCGTAGATCGTCTCCCAAAGTAGACAAGGTGAAAAAGCGCAGGTCAATTGCAACCAGCAATCCGTCACAACAGAGAACAAAGTTAGCTGGCTTCTCAAAAGAGGAAGATGAAATTGTCATTAAAAAGTCACAAGTCTGCAGAATTGATTCAAATGATAGCAACAACTCAGAGGAAAAGGTAACCGTTACAAGAAGGAGAAACAGCTTTGATTTAGAGGAAGAACACGACATAGTGCAAAAGAGGAAAACGAAAACAGATCAGAGACAAAGCCCTGCAAGCTCATCTAGCTCTAATTCGACTATTGGAAATGCGTCATTGACAGCAAGATTGCAAGGGAAGCCTAAGGGGCAGTATCAAGCTGCTAGAGACCAAACTGATAGTATAGCTGAGGAATCAACCAAAGAAGACAATATTGATAATGGACGAGATGATGAAGAACTGGAGTTGGCATTTGCATCCAACAACAACCTCATGAAGAGTTGGAGAGGCCCAGTATTTATGATATTTGTAATTGTCTTGCTAATATGTCTTGTTGGATCATATGCAAGCTTGTGGAGCAACAGAATGTCAGAATGGCCTGCTCTTCCAGaaataaaagatgGATCAACATTTGGAAAGGTCAGCAGGGAGGAAGTATTCAAGATGCTTCAATGTTTACATGAAAAACTATCCTTGTATGCAgGAGAAAAGGAATGTGGCTACTCAAATGTTACGGTAGAGCTCAATGGCGGCCAACTTGGAccttttttctcttcagaATGTTCCTATCTTTTGGAGgaaaaactCATTGACTATGAACATCTCTCTTCGCAAGTTGTGAATTTTGCCGTCGACAAGATGTATTCGCAGTTTTTCAGAGTGGTTTATGAGCGAGGGACAATGGGGGAAATTACGATTGAAACCCTTAGCATGGTCACACTATCGTCGAAGACCGCCGTCAAACCGTTGATATGTCGTCTAAAGCAGGCTTCACAGATGCTGACGAAGTACATTTTAGGAATCGTTCTTGGCTTTGGGCTTTTGCTTGCTGCCTACTATGTCATGAAGCGACGCTGGATGATGGATGATGAAGACACCAGGCTTATGTTCGTTTATGTTGAACGCATCATCGAAAGCCTTCGTAGGCACCACGAGGCTTGTGAACATGACAGGGAGCTACCACCTTATCTCCCAATCCCACACGTCCGAGATATGCTTATTCCTCCACGAGAAAgaaaacaaaaatctagAGCGTGGAAAAAGGCTGTTGATTTTCTCAGCTCAACCGACGCAAGGATCCGAGTTGAAACGCAGAGAATTGCGGGAGAAGACTTTGAAGTGTGGAGATGGATTGGGGTTATGCCGTCAGACAAGCATGTCAGTGGGGCCAGCAACCATTTGGGTCCTGAAGTTGAAAGAGGGAAGTTCTGGCAAGGGCAAGCTTTCGATAAGCTGGAAAAGGTTGTGCGAATGCCGATCATCACTCCAACACCATGCTTGAAGATCAGATATCTTCACGGAGGCCCTGTTGAGAAAGAGGAAGGATGGGAACGTCACGTCCGCGATgctttgcttgaaaaatgcaaCGACGGGGGAGCTCGCATTCTCCATGTTTATGTCGATGTCAAGTCTTCTGAGggCTGCGTTTATGTCAAATGTGATTCTCTGGAGTCAGCAGGAAAGGCCTTTCGAAGCGTTTACGGCAATTGGTTCGATGGTCGCCTGGTGATAGTTAAATTTGTTACATTAGCCCGTTATCATCAAAGATTCCCTGATGCCTTAACACGCATACGGCCTTTAAATGTTTCTGGGGATTTCCCTTCTTCGCTGAGCTGGAAAAGCCAGAACGATGAACCAGAAACATGGATCAGTCGGTCGTGAAAAGGTAAACAAGTGGAAACATCGAACCAAAGTGAATCAAAGTGCTGAAGACACTGCAGCAGCAGCTGCGGCGCGTCTCTTGTCATATTTCTCAAGGTCTGAAACACAGGGGTAGTTTATGGAATTCTACTGAACACAAATTTCTTGCCAATGTAGGTTGTGCTCAGTTGTTCAACATTCCTTATGTAGAAGAAATACCGGCTGAACTCTGCACaggttgatatttttaaagtaagCTAGGTATTCACCAGCTATTGATAATTATCGAACTCTTGATCGTAAAGGAGCCTTGGGCATATTAAATTCAAGGTTCCTTAACTCAGTGTTGGGAAACGCAACCTTGCCCAAGAATAGTAAGCCTTACCTCATAAAATATCCTTGAAATTCACTGTTTGATAGAAGcgtcaagaaaatgttttaaagtcAGCTAGACGCTATTTTATTTCGGTAGTAAAAAACTCTGGTGGCTGTTTCTCGCTGTTAACCTGTTTGCCCTTGTTTGCTTGGCCCCAAAGTAGACGTCCGAAGTagtattttttgaatattgagGCACAATAGAAGAAACTTTACAATATTTAGGCGAATGGATTCTCGATACGTAAGTTGCCGAGCTTCATAAAGATATATGGCAATGCATCTTCAGTTGGCTTCACATTCAATATGTTATTTAATCGCATCGCTAAAGTCAATCTGCGCCGCTGCACGTGACAGAAAATGTTAGCCTTAGAACTCCTTCCTAGTGCTTGATGTATCTTTCCCCAATGGTCCTGCTGTCTTTTTATATAGTTGCGAACTTTTTTTAGGCTGCTTTCACATCTGAAATGCAGTAACGTTcaattaaatcattttgataaattccGTTGACtgttaattttaaattgaGATTAGTTGTTTAGACGTTTCGCCTCTGCCtgatatatataaatatatatatattatatatatatattggtAATGTTATTCAGGTGTTATGTATGTTAAATGCTGAAGTCTTTGTTTCCGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09402 all species →	MSC	Man1-Src1p-C-terminal domain	Domain	Interproscan
PF03020 all species →	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR018996 all species →	Domain	Man1/Src1-like, C-terminal	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052277 all species →	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR041885 all species →	Homologous_superfamily	MAN1, winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428 all species →	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006998 all species →	Biological Process	nuclear envelope organization	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19410	LEMD3; inner nuclear membrane protein Man1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.