Gene detail

Detailed information of XP_065059092.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:361582...371191
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065203020.1

AGAGGTCACCTGCACATATGTCACGTGACACTGATCCCCAACCTGAATTGAAAACATGGAATCAAGCGCGATGAGTAGTGCGGTACCTACAATTCCAAAAGTTTCATCGGTTCATCTTACCCTACCGTTGTCATGCCAAGTTTGCCTCGGAAAGGTAAAAGATCCTGTGATTTGTGCTAATCAGCACGTTTTTTGTGCAAACTGTATGTCGCAGTGGCTTGAAATCAGCAAATCAAACATGTGTCCCACTTGCAGAATACCAGTTACAGACAAACAGCCATTCAAACCAATCATAGGAAGCATGGACATTTCACCAACAGCTaccaataaagaaataaaaggaCAATTAAGAAGAACAAGGTTCGAAATACTCTTCCAAGAATTTGAGAGAGAAATAAAGACACTAGAACAACGCATAGAGGAATTCGAAGAAGAGAACCAGCATATTAAAGAAATCAATTCTGACCTAAGAATGAGGTTAGAATTCGCAGAAACTAAACTGGCCAGCTCTTCACATGGAAGTCGACAAGAGCTGAAAAATGGAGATACTGTTCCCCAAGATATCGGCACAATTTTAAAGCTTTCATCTCGTTTGCAAGATACCATCAATTTCAACAATGAATTGAAAAgcgaaaacaaaaagttgaaaaagCAATTACAAGAGACGGTcgagaaaaatgaaagcatcaaagaagaaatggaaaaaatgtcaaatgaaaataatttcagcgTTTCACCAAGAAAGTACACGGTTGCTGCCTTAgaaacaaaagttgaaatgtATGAACGTGAAATAAAAAGGCTTCAGATGGCATTAGAAAGAAGTGATGAATATATTGAAGAGCTTAAGCAACAGCCAGGCTTTTCTAAGCAATTTCGTAGTTCTTCTGATGTACTGGCAAGGTCCAGTGAACGTTCTTATACTGGTGAAAGTCATTCTCCTGAGCCTAGCTTCATAGCAAGCAATTCCCACACCTCGAAAATGGACAAGTTGGCTTCTGTCGCACTTGGCACGAGAATCCCGTTACTAAGCTCATCAAATAATCAGGGACTAGCAGCGATTTCACCAGCTCAAGGTTACAAAAACTATAGTATATCTCAAAGTGAAAGTGGGGCTGTATATCAATTAGAAGGCAAATTAATGGAAAATGCAGAAACACTGACAACCCCTAGTAGTACCACTCGCTCAATTTTTGAAGACTCTTCGAAGTTTCCTGCTTGTGCCAAGCTTATTGAGTTGACAAAAGTGCGTCGTGACCTTTCGGATATTCAGCCTGCAGAAATAATGCCTGTCGATTCGTCCAGTGAAAGCTCGGAAACCCGACACGAAAATACAGATTTGTCCGAAAATGTTTGCGATCTAGTTGCAAGCAGCTcagcaaaagaagaaattccCAGTAGTAGTTGTTCCGATAAAAGCCAGAATTTTAATAGCAGTGATCCTAAGGCTGGGCAACTGTCACCTCATGGTACTGCTACAAAAGCTTATTCTCAATATAATAACTCGCCTGATGCTGCTTTGTCGCCTAGTCATAGCAAGACCAGCAACCCACAGGCATTCTACCGACAGGCGTCTCCCCAGTCTCCATTGACACAATCATCAGCATACGGACCTCTCAAAACATCGTACCCTAGCTCAGTTACGTTTCAAAGTAATGAACTACAGAGCAATGCCCGGAAAAGTCCCGGATACAATTGCACAGCAGCGAAGAAGATTAAAGTCGAAGAGGAAGATTAACGATGCACATAGCTAGAAGAACcacaatgttttatttatttattatcattaaGGTGATCACTCGATACATAGATGATTTGTAATTTGCAAGTAAGCGCAGTTCTCTGTTAATGAATGATGGGAACCAATGATCCACTTTGGTGTTTGAAGTGTGCGGTACAATTTATCCTTTCAATTCGTTTTATACCTTAAAATAATCCCAAAATACTAACTGCccttttcatctttgtttCAGCAATGTAAGCATaggcttttttaatttgtccACTCTTTTCCCTTTCGTCCTGTGGcgcttgtttttatttctctgAATGTCACTCGAGCAGAACATTCTTTTTTGCCGACAAACATTTACATGACATACGCAAGTCACTGCTAAAGgttgtttgtaaaaatttctttttttctaacttAATGTTGATATGATAGAAACTACTACCACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039209 all species →	Family	ORC ubiquitin ligase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14609 all species →	RING FINGER PROTEIN 219	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0006275 all species →	Biological Process	regulation of DNA replication	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24091	OBI1; ORC ubiquitin ligase 1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.