Gene detail

Detailed information of XP_065059161.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:1894721...1905300
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135686767

ATGGAGAACGGATTTCGAACACACGGGTGCAAAGCAGAGAACGGTAAAGCGGAGAACGGCTATACGGAAAATGGTATCGATGAACATTTGGTGAGCGGAAAGTGTATGAGCAAGAAGCTAACCTTTCATGGCCTGCAAAACAGACGAGTTTCAGTCCTGGAAGATGTTGCAGAAAACTTAAGCAAAGAGGGTGACGCCAAACATGTAATTGCATCTCTTCTAACAAACGAGAGTGTCAAGTCATTGCTTATGGAAGTAGCTAACCTCGATGTCTTTGCTCCAAGTTTCCTTGAAGAGTTTAAGGAAAGCATTCTGACCCTGTGTGCTCTCAAACAACTGAAGTACTTTTTTACAATTCCCCTTTGCCAGTTGGTCACCGCATTGGCTGATCTGAACTGCTGCTCTGGTTCTTCCGCTTGGGACCGAATCAAAAGCTTAGTAATTCAATCAGAATATTCAAGAGTAAAGACCTGTGTGTTTCTCGTCCGAGAAGGCCTTACTGGAGCGTACAATTCATTTGCAACAAGGGTCGAAGCAACCGATCCTCATGCTGTCTACCCCACCAACACATATCGCTACAGTGATGGGTTTACTGTCTCTAACGACGATTTCTCTGCCTTTGAAAGCACAATGACGCTGCACTTGACAACAACAACCCAAGTCCGAAAGGGCGTCCTACAACCGAGCGACGACACTCTGGCTCGAATTTACAGACCTCTGGGAAGGTGTGTTGCCATTGTAGATGACAAGGTAGCAGCAATATACGGAGAAACGCTGGCGAAGTATTTCAGCCAGCACGCCATCGACTTTAAAGCATTGATCTACAAAGGAGATGAAGTTGACAAGGAAATTGAAAATGTTGAAAGGATACTTGTGGATTTAAAGAAGCACGGTGTGTCGCGAAACGAACCAGTTTTGATTGCAGGTGGAGGTGTGATATCGGATATTGGGGGCTTTGCGTGTGCTTTGTATCACAGATCAACGCCTTATGTCATGCTATGCACATCTCTGGTGAGTGGAATCGATGCAGGACCCTCTCCTAGGACATGCTGTGACGGGTTTGGGTTCAAGAACCTCTACGGGGCATATCATCCACCTATTCTCACCATCACTGATCGTTTCTTTTTCAAGTCACTGGACCAAGGGTGGTTACGTCATGGAATAGCTGAAATCATGAAAATGGGCATTGTCAAAGACAAAGAGCTTTTCGAGTTGCTGGAAAAAGCTGGACCGAGGTTGATACGGACCAAATTTGGGACTGAAATGGAGTCAAAAGATCCTGATTTTGAAGCCCTTTGTGATCTTATCATTGGCCGGGCACTGAAGTCCTACATCGAAGCCGAGTATGGAAATCTTTGGGAGACACATCAATGCCGTCCACACGCATACGGCCACACCTGGTCACCCGGCTATGAACTGTATGCGGGCATGCTGCACGGCCATGCAGTTTCTTCAGGCATGGGTTTCGGCGCCTACCTTGCTTACATGGAAGACTGGATCACTAAAGATGATCTTGAGCGCATCATGTCACTTATTTCAACGATGGAGTTAACTCTTTGGCATCCTACAATGGATGAGGTTGATATTGTCTGGTCCTCTCAGGTCAAAATGGTACAAAAACGTGGAGGTAATCTGTGTGCTCCAATACCAAAGGGCGACATAGGCCGTTGTGGTTACTTGAATGACTTGTCTTATGAAGGATTGCAGTTAAAACTTGCCAGTTACAAGTCATTGTGCCATTCATATCCACGGAAAGGCCATGGGGTAGACATGCATTGTGAAGATGTTGGGTTGCAGAATCCAGCGACAACTGCGCAGCATTATATCAGGCTAGAGCAAAAATCAAAGACTGAGGCCGCTCCAAAGATGTCCTATGCAGAATGGATCAAGGAAGTTCAAACGACTCGAAACAGTGAATGGAAATTCAATGTAATGTTCGAAGAGGCTGCAAACACGGAAGCTCCTCCAAAATTTGACCATGTTACTTTGTTCCATCCTGGAGTGGAACAATATGCAATGTCAGTGACATCTTTGCCGTCGGAAGATATTAAGACAGTTGCAAAGGCAACAACAACTGCATCATTATTTGCACCATGCATGGTTGGAACACTAGAATCGCAGTTTCTAAAAATGCAAGTTGCAATAGCAAAAGCTAAAAACGTTTTGGACATTGGGACCTTTACAGGTATGTCTGCGATGTCAATGGCTGAAGGGATCCTGTTCGATGATGGAAAAGTGGTCACGTTGGAAAATGATGAAACGTACGCAGATGTAGCAGAAGAGTGCTTCCGGAGGTCTAAAATTGGGCACAAGATACAGCTACTTAGAGGAAATGCTGTTGATAGCATGAAGAGGCTTTTGGAGTCTGGTGAGAAGTTTGACGTCATATTCATTGATGCAGATAAGGAAAATTATATAAAGTATTATGATCTAGCCATGTCTGGGCTCCTCAGCGAAACGGGCTTCATAATGGCCGACAATGCCTTGTGTGCATTGCTTTACGATGCTGATGACGAAAGAAGCCAAAAATTGCACGAGTTTAACCAGCATGTAAAGAGCGATAAGAGGGTGGAACAGACTGTTCTTACATTGCGAGAGGGAGTTTCTATTATAATGCCGATCAAGAAGAATTAG

Transcript

rna-XM_065203089.1

CAAGTGTAATAAGGTCATGTACTTGCATAATTCGTTTTGCATATTTCACTTGCGGCAATGGAGAACGGATTTCGAACACACGGGTGCAAAGCAGAGAACGGTAAAGCGGAGAACGGCTATACGGAAAATGGTATCGATGAACATTTGGTGAGCGGAAAGTGTATGAGCAAGAAGCTAACCTTTCATGGCCTGCAAAACAGACGAGTTTCAGTCCTGGAAGATGTTGCAGAAAACTTAAGCAAAGAGGGTGACGCCAAACATGTAATTGCATCTCTTCTAACAAACGAGAGTGTCAAGTCATTGCTTATGGAAGTAGCTAACCTCGATGTCTTTGCTCCAAGTTTCCTTGAAGAGTTTAAGGAAAGCATTCTGACCCTGTGTGCTCTCAAACAACTGAAGTACTTTTTTACAATTCCCCTTTGCCAGTTGGTCACCGCATTGGCTGATCTGAACTGCTGCTCTGGTTCTTCCGCTTGGGACCGAATCAAAAGCTTAGTAATTCAATCAGAATATTCAAGAGTAAAGACCTGTGTGTTTCTCGTCCGAGAAGGCCTTACTGGAGCGTACAATTCATTTGCAACAAGGGTCGAAGCAACCGATCCTCATGCTGTCTACCCCACCAACACATATCGCTACAGTGATGGGTTTACTGTCTCTAACGACGATTTCTCTGCCTTTGAAAGCACAATGACGCTGCACTTGACAACAACAACCCAAGTCCGAAAGGGCGTCCTACAACCGAGCGACGACACTCTGGCTCGAATTTACAGACCTCTGGGAAGGTGTGTTGCCATTGTAGATGACAAGGTAGCAGCAATATACGGAGAAACGCTGGCGAAGTATTTCAGCCAGCACGCCATCGACTTTAAAGCATTGATCTACAAAGGAGATGAAGTTGacaaggaaattgaaaatgttgaaaggATACTTGTGGATTTAAAGAAGCACGGTGTGTCGCGAAACGAACCAGTTTTGATTGCAGGTGGAGGTGTGATATCGGATATTGGGGGCTTTGCGTGTGCTTTGTATCACAGATCAACGCCTTATGTCATGCTATGCACATCTCTGGTGAGTGGAATCGATGCAGGACCCTCTCCTAGGACATGCTGTGACGGGTTTGGGTTCAAGAACCTCTACGGGGCATATCATCCACCTATTCTCACCATCACTGatcgtttctttttcaagtcaCTGGACCAAGGGTGGTTACGTCATGGAATAGCTGAAATCATGAAAATGGGCATTGTCAAAGACAAAGAGCTTTTCGAGTTGCTGGAAAAAGCTGGACCGAGGTTGATACGGACCAAATTTGGGACTGAAATGGAGTCAAAAGATCCTGATTTTGAAGCCCTTTGTGATCTTATCATTGGCCGGGCACTGAAGTCCTACATCGAAGCCGAGTATGGAAATCTTTGGGAGACACATCAATGCCGTCCACACGCATACGGCCACACCTGGTCACCCGGCTATGAACTGTATGCGGGCATGCTGCACGGCCATGCAGTTTCTTCAGGCATGGGTTTCGGCGCCTACCTTGCTTACATGGAAGACTGGATCACTAAAGATGATCTTGAGCGCATCATGTCACTTATTTCAACGATGGAGTTAACTCTTTGGCATCCTACAATGGATGAGGTTGATATTGTCTGGTCCTCTCAGGTCAAAATGGTACAAAAACGTGGAGGTAATCTGTGTGCTCCAATACCAAAGGGCGACATAGGCCGTTGTGGTTACTTGAATGACTTGTCTTATGAAGGATTGCAGTTAAAACTTGCCAGTTACAAGTCATTGTGCCATTCATATCCACGGAAAGGCCATGGGGTAGACATGCATTGTGAAGATGTTGGGTTGCAGAATCCAGCGACAACTGCGCAGCATTATATCAGGCTAGAGCAAAAATCAAAGACTGAGGCCGCTCCAAAGATGTCCTATGCAGAATGGATCAAGGAAGTTCAAACGACTCGAAACAGTGAATGGAAATTCAATGTAATGTTCGAAGAGGCTGCAAACACGGAAGCTCCTCCAAAATTTGACCATGTTACTTTGTTCCATCCTGGAGTGGAACAATATGCAATGTCAGTGACATCTTTGCCGTCGGAAGATATTAAGACAGTTGCAAAGGCAACAACAACTGCATCATTATTTGCACCATGCATGGTTGGAACACTAGAATCGcagtttctaaaaatgcaAGTTGCAATAGCAAAAGCTAAAAACGTTTTGGACATTGGGACCTTTACAGGTATGTCTGCGATGTCAATGGCTGAAGGGATCCTGTTCGATGATGGAAAAGTGGTCACGTTGGAAAATGATGAAACGTACGCAGATGTAGCAGAAGAGTGCTTCCGGAGGTCTAAAATTGGGCACAAGATACAGCTACTTAGAGGAAATGCTGTTGATAGCATGAAGAGGCTTTTGGAGTCTGGTGAGAAGTTTGACGTCATATTCATTGATGCAGATAAGGAAAATTATATAAAGTATTATGATCTAGCCATGTCTGGGCTCCTCAGCGAAACGGGCTTCATAATGGCCGACAATGCCTTGTGTGCATTGCTTTACGATGCTGATGACGAAAGAAGCCAAAAATTGCACGAGTTTAACCAGCATGTAAAGAGCGATAAGAGGGTGGAACAGACTGTTCTTACATTGCGAGAGGGAGTTTCTATTATAATGCCGATCAAGAAGaattaggaaattttttacactttCATCTATAGTTATGGTTTAACAATTTTCATGATTGGTTAATCACTGTCACTCAATGTCAATTTTCCTCTTAATGATAGAATTGTCATTTTGCACTGTCTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01596 all species →	Methyltransf_3	O-methyltransferase	Domain	Interproscan
PF01761 all species →	DHQ_synthase	3-dehydroquinate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR002935 all species →	Family	Class I-like SAM-dependent O-methyltransferase	Interproscan
IPR050071 all species →	Family	Dehydroquinate Synthase	Interproscan
IPR035872 all species →	Family	2-epi-5-epi-valiolone synthase-like	Interproscan
IPR030960 all species →	Domain	3-dehydroquinate synthase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43622 all species →	3-DEHYDROQUINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0003856 all species →	Molecular Function	3-dehydroquinate synthase activity	Interproscan
GO:0017000 all species →	Biological Process	antibiotic biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24265	PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein	-	Cofactor metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.