Gene detail

Detailed information of XP_065059170.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:1941450...1953769
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065203098.1

CCAGGTTGGGACGTTATTTTGACTGCGGAGGAGCATGGTACCTCGGATATACGAAACTCAAGGTGAAGGGAAGTATGTTTGgcagatatttttgaaactgtaTACACCACGTTGTATAATGAAATAAAGTCAGTTATGAATAACGATGACATCGAGCTAAAGACACTTCCACTTCATAGTAAAACAGAATTATCCACGCAGACGTCAAAAGTTCTGAACAGGAAAGGCAAAGCTGGCGAAGGGCCTAAATCTGGTAAGGTCAACAACAAGGCCGAAAGAGGTGAAATTATAGGCCAAGTAGATCAATCTGGTAAATCAGTTATAGGTCTGAACagtaaaaagttaaaaaaagtaGACGAGAATATGAATACGTCGAAGAAAACGGAGAAAAAGACTGGTCTTCGCGATTGGTTCATGGGCAAGTCAACCAAAACACAGAAAACCAAAGTCATGCAACGAACAGATAAAATGATGGGAGGCCCAATTATGGAACGACTACAGAAGCAAAGTGCATATCTTAGTGCTACTTTACAGGAAGAAGAATCTTTGGAGGGTGCTAGGTCTACTGGCAGTGCCAGTCCAGACCACGAGCAACTCAATTACGAGGATTTCGtacacaaaaaacatttactgcAGTTTCACTCTAGACCAACATTTTGCGATGTCTGTGATGATTTTATTTGGGGCATGTACAGATCTGCGATAAGATGTAAATATTGCAAGTTCACTTGTCATTATCGGTGTCATATTGAGATAGATGTTCACTGTCCTAAGGCACCAGTGAAAGAGAAATCATTAGAAGACATAACCAAGGAAACACTGGAGTTTTTGAATGCTAAAGATGGAAAGAAAGAGGCTGTTGAAGAAGAGGCGCATGTCACTCttccaaaaaatattgcttcaGTTTCAGAATTGAGGCTGATGATcgaaaattataataaatcatcaaatttgataatgatatTGCAAGATGATGGCGTATTTCAAGGGTATATTCAAGTGGTCATGTGCCTGAATCGGCCCGTAAACATCCATGCAGACACTTCAGATTTGACAATGAAGAAGGCGCTGCTTAGGAGCAATTCTCGGCGATCGACAAGGCATAAATCAGTCGTTGCAGTAAACAGGGCTGCAAGTGTAAAATCATCGGAAGGTTTGGACAGAACGGCAACGATGCCGTCTAGTATCGCATCATCTGTTAATGCACAAGATGGAGaagaaacaataaagaagGAAAGGCAGCGGCCACGAGGACGATCAAGCTTTTATATATCGCAAAACACGAAAAAGCCACTGCATATTACAAGCACTACAACAGCTTACGAGGTTATCGAAGCTCTGCTAGACAAGTACCGCGTAACGGACAATCCACAAAAATTTGCGCTTTATGAAAGAACggaagaaaatgattgcaTTCGTGTACGGAAGATTGACGCTGACGAGCATCCTTTAGTCCTAAGTTTATTGTGGGGGGACGCGCGCTCGACAAAAGAGTTTTCACTGCAAGAAAACGAACGGGGCGATATAATTTGGGATGCATTTGAAATACCCgagctaaaaaattttcttgtatttttaaatcGAGAAGAAGAAGACATGATTAACAAGgttAGAAAAAAGTATGAAGAGCAGAAGAAACTTTATCAGCAGGCACTGGACTTTAAAGCTGAAAACAGCACAGAATCGGACTGCTAAGCTGAATGTTGTAGATAAAAGAAGTTGTATTTTTACGTCTAGGTTAATTTAGATCGTAATATAGGCTGTACATAAAAGATAACCAACGGGTTAACATATCTCCAAAgtgagaaaaatttctaatcaaAACCTGCCACTAATGTCTATTCCCACTATGAATGTCAAAGGAGTCAAGTGTATATAGCTTCTATACTGAAAACCGTCGTGTATGAAAGTTGTAATGCGAGCATGCATTTCTTGGCTACTTCTGAAGAGTCTGCAATAGGCTTTTAAACAAGCCGTCTATGTCAGTAAAATAtgaacataaattttcaataaatgattAGGTGATCCAAACTACACAGAAAAGCTTCATACTTGAGCTAAATCTAAAGACTTTCAAAATccccttttaatttttttagaatttatatCCCTTTCAGTAGTTCCTCGGAAACATAGATCGGACCTTTCTCCTGAATAATCTACGTTGATGCTGAAAAACGTTTCAAAGCCCGCTTTAACTTGAACGCGCTGTTAGCTCGTGCTGTTAGTTAGCTTTATCAACCATTGCTATTCAAAAGCAATCCAAACTTAAATgacttttctaaatttcaacATAGCAAACCAACCCTTTTTGCTAAGTGTTTCTTCGACAGGGTGTAGCACTTATGGGCTCGTTGAGCTGAGGGGGCTTGTTGAGTTTCCAAGAACCTCTCCTTCCTATCCATATAATTACCTGCTTCTTCTTTAGGTTTGATTGGAAGGATTTTCCTTGTCTAAGCGACTTCTTGGACAAGCTTGGTAAAACTTAGCATATAAGCATCCACACCAAATATGGAATTTCCTATAGAGAAAGTGGGTGCAGCTACTGGTAAAACaagatattttcttatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16517 all species →	Nore1-SARAH	Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR011524 all species →	Domain	SARAH domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR033614 all species →	Family	Ras association domain-containing protein 1-6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22738 all species →	RASSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09850	RASSF1; Ras association domain-containing protein 1	-	Non-small cell lung cancer	ko05223	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.