Gene detail

Detailed information of XP_065059314.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:4596613...4607836
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065203242.1

ACTACACCAGCCTCGCTTCCAAATAGTTGTTGATGAATGAATATGGCGGAAGCTTTTCACGGCCTAGTTGATGGTAAAGAATACAAATTGAATATCGGCTCCagttttaaaaagagacaaaGTGATGGTATTTACCACGCAGTAAGATatgaTTTTAAACCAGCATCAGTGGACTCATCTAAAGCATCAGAATTAATTGTTGGATCAAATAATGATGTTACTGTCAAAGTTCCTCATATACAGgaATCAGGGAGCACTGTATTCAAAGGATCAAAAAGACCATGTGCTAAAGACTGCGTATTGATTATTGATAAAGATACTGGGGAGGTAACTTTAGAGAAACTTGCATCAAACAtccaattgaagaaaataagATCAGCCAATCACTCGATAGCAAAAACAATAAGCCAACCTGGGCAGCCAGTAGCAAAAGTTTCAACGAAACCGAGTGTACACAAGCAAAGAGTTGCTAGCAAAGGGGATAATGTGCCAGGAAAAGCAGAAACTGAACCTAACAAGGTTGAGAATAAGCCAAAAGAAAGGATAGCAGAAAAGCCACCTCCTACTTCTATAAAGAATGTGGAAGCCATTGGTAATGATCtgaagcCACCACATAACAACGGATCTGGAAGCCCGTCGTCGGCTGGGTCAGATTCAGACTCGTCGTCTTCAGGGACTGATTCGGATTCAGACCAAGATGATCTAGAAACAAGGGAACAAGCCAAAGCTTTAGACAAGGCTTTAATGCAAGAGAACATTCAAGAAGCGGGGAATCGAAATTGGATAGATGACGATCTCAAGCTCACAGACTCTGACAGTGACTAATTTTATGTTTGGTTGGTTTGGTTTTTATATGCAATTCAGTTAtactaatttttaatttattgagCATTTTTCTCGTAAGCTATAGTGGAAGACGATGTCTAGATTGAATcgtgaaaaacttttaaggTAAACTCCTTATAGTTAAGTCTTACAGAAATAGGCATACAAGTGATTTCTACCAGCCGTATCAGCTTGATCATTGAAATGTTAGATAAGCTGATCCCTTAGAATTTTCATTGCTACTGTATGGGATTGTATTGTGGGATTGATTAGTCACTTGCTGACAAAATGAGGCTACCTATTAAGCATTAAAACGAGGTGAAAAAAACGAGCGAAGGATGTAGCAGAAACCACTTTGATAAAGTGGTTTGTATCATCTTCTTCCCCAGATTGTTGCGCAGTCCctgtttgttattgttattattttaggttaaagagaaaaattgtaGTTATAGATGAAATGTAGCAAATTTCTTATGGATATTATAGATGTAATGCAGCAATCAGTAGCAAATTCATTTGCATTCAGGTTTCCGTAACGGCATACAGATACAAGCCACCGAAGGTCATGGCTGTAGTGGATGCTAAGCGTTCAAGGGGGGTTGTATGGATTTTACCTGATTTTTCTTGCTCCATTGAGGAAAAAATTCCCGAATGGAGCCTGGAATGCTGTGAATTATGTCTGATCAGAGAGGctgcagccccccccccctccctagCCCCTATGTCTCCTATACCTATGCCGAAAGTTGAATGTACTGGTCGTATTGTGTTTTCCGAACTGTTGCCCGAGAAGCGGCGACATTTTTGCCcgttttttaatgaaacaacTTTAAAGTGGCTGCACCCCTAGTCTCCTTTCTCATACGCTAGACTTGGTTAACTTCCATATGCCTTGCACGAACCATTGtggaatggaaattttttttgctttgcgAAATTGTTGCTACAACCATATAACATGTATGGCAGGCAGTTATCGTTTGATTCTATATTGTTTTCTGTGATTTCGTTTTTCTCAAGAAAATAGAGCAAGAATCTAAcagaatatttgaaatgattttccaGTTACCAGATATGGAAGGCTGCTTAGAGACTCCAGTTTCCTACCAAAGGGGCTAGGGTTTTAGAAGCAGCAACACTCACTTTAGTAAGACTCTTTTACCGTGGCAATTAGTTTTATGTGGATATCGAGAATGATGTCAGTATTCGTGGTTCATAATTAGAAAGAGATGCACGATACTATTTATGACTATGATAGTGAAATGTATTACTGTATTATAAAATTAAGTTTATGAAATTAATCCTAATTGTGTTAGAAATGTAAATGTTTCATAGCCATAAGTTAtttagcttgaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007899 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09816 all species →	EAF	RNA polymerase II transcription elongation factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027093 all species →	Family	EAF family	Interproscan
IPR019194 all species →	Domain	Transcription elongation factor Eaf, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15970 all species →	ELL-ASSOCIATED FACTOR EAF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003711 all species →	Molecular Function	transcription elongation factor activity	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0032783 all species →	Cellular Component	super elongation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15186	EAF; ELL-associated factor	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.