Gene detail

Detailed information of XP_065059337.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1:11932889...11950506
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065203265.1

TTGATTACGTCAATACCGAAGTCTAAGTATAGGCACAGGGAACCAACGAATTGATATTACAATGTATCCTGTGATTGTGGAAATGTTGTGAATCGTCAGGAAAATGTCGTGAAATGAAATCTAAAGCGTTACCAGATGCAATGGAATATCAGACAGAAGAGGCCCAGAGGTTGATTGAAGAAgttaaaaggaaattttttgataaagGGACACTTCTCAATCAGTTTGATGAAAGAGATATTGAGCGAATAAATAATGATGATTTGTATGTGTGGCTGTTTATTAAGCACAAGCAAAAGGATGTTGACAAAGCCATTGACATGATTgTTGATTGTCTTCGATGGAGGGAATCCTTTGGAATAAATGACTTGCTGGAAAGAAATATTGATAGAAGATTGTTCGAGATTGGTTTTTTGTATGTCcacaattttgacaaaaatggaCACCCACTTGTTCTTTTTCATACAAGACTTTATCGTAAAGATGCCCACAACCCAAAGGAAGTTAAAAAGCTTGTAGCCTTTGGCCTCGAGAAACTGTCTAGAGAACATCCTGGTGGAAAGGTGACTTTAATCTTTGATATGCAGGATTCAAGTTTGGCAAACATGGACATGGACTTGATTAAATTCTTGATTACAAATTTCCAAGTGTATTATCCATGTATGCTGGAATATTTAATCGTTTTGGAAATGCCTTGGATATTGTCAGCTGCTTGGAAAATCGTGAAGACATGGTTGAGCACTGAAgggatttcaaaaataaaatttgtaaacaaaacagaaatagTTGCACAATACGTGGATGCAGACCAGCTGTTAATAGGGATGGGTGGAACTgACGACTTTAAATACCAGTATCCACCTCAATTGGCAAATGGAAAGAAAGATACAAAAAGCAAGCCAAGCAATGCCCCGATTGAAAACAATCAAGATTTGGAATTCAGCAGCATATCAGTGTCAATGAGCACAGACATACATGGTAAACCAGTGAATTCATCAGATGCGTTTGAGTTGCTGACAAAAACTGGTGACGATTCCTCATCAGAACTTCTATTGTCAGACAGCATGAGATACCGGGGCAAAAATGAAGACATAACTAAATCAACACAACAGAAGCATAATAGAAGGAGAGACGAAActtctaaaaagaaaagccGTTTTGAGTTCATAGGCCCATTGATTACCATATGCCCTGCTGatgaaattgtattttgtggAGCAGCTAGTACTTCCGGAGAGCTACTGAGCATACTTACCATCACCAATACCATTTCAACAAATGTTGCGTATAAGGTTAAGACGACATCCCCAGAAAACTACAGAGTGCGCCCAAGCTCTGGTCTAGTGCCACCTGAAAATAGTGTGGAAATCAACATTTATTTGCAACCAGGCCACACTGAAAATGTTAATCGTGATAAGTTCCTCATTTTATCGGCACTTGTGCCCGAGAAAGAAAAGTCAGCAGATATTGGCGCAATTTGGAAACAAATACCAAAATCAAGTGTTTTAGAACACAGATTGCGATGCAGGTTCGAGGTCACCTCCATGCCGGCACCATACACTGACACTCACGATTCAGGACCAAAATCACCAAAACatgatgcaaaaattgatcCACTTGAAAGTCTGAGAAAAattctagaagaaaaaatcatagaaGATTTACAGGCAAAGGTTAACGATTCGCATTCAAGGATAGTTACTTTGGAAAGAAACATTCGAATTATCCTTTGTTTACTTTGTATTATAGTGGCATTTGCATTAACGTACGCTGTATTATCACCGATTTTGAAAACTTATACTTCCAAGTTTGATCGATTGTTATAGTAATGTAACCTAGCCTTTCAAAATTGGAGGGTATTCACGTGATATATTTGTAATGCCGATGCGAAGAGCTATCCAACTTAtcattatatattttgtaCGCAGTTTTTCTAATCCCTAAATGCATGCTAACAGTCTAACTACCGACGTTGCTgtcgaaatttttttgttgaaattgcGCGAAGCTGAACATCTTTATAACTATATACACAAAGCTAcagtgaagaaattttgaaatattcaattgCCCGGTTTTCACTGTTGTTTTAATATATTTCATCCTTgtattttcttgttatctGAATTCGTTTTCAAACTAGATCTGGTCAAAAGGCATAAGCCTTCAATTTGTTTGCGATATTTGTGTTGATTGTAGATTCTCAATTTAAAACTTCTCAGTTATTCAAAGCTCTACCTAAGCAGAATTTGTTCCAAATTTATGTAGATGCCTGTATGTTTATAAATCTCATCAAAATGTAACTTAGAACGTATATGCAATCTTTTATCCACATCATTCGTTTTTATTGCAACCATGACAATTTTTATTAGcttatttttactttgctACTTAGATATATGATTCCTTGTATCAAAAACTAACCCAAAGAGATTGATAGCCTTTAAAGGCTCCTGCTTAGCGGTAGCTGACTTTTTACGCGTCaagaaattgtattttcatgcagtacgacCAAAGATACTGGAATATCTTTGGcacgatattaggccggttttgaaattataataGCAAAGCTTGCCAGTTGCGCAGAAGATTTTAATTGGCATGACTTCGACAGATTCAGTTTTAATAGCCAACAAGCATATCACTATTAATCAAAATGAACTTGTTTGCCCCTGATCAGAAATTTTCgctttttctttagttttctCCAATAATAGATTGTCGGTAATCAGAAAAAGtatttaattttctgaaatctttGATGTAGCAACTAAACACAGAAATTATTAATGTTTTCACATATCTGAAGTTCGGTTTGACATAATACCAATGTTTTCTACTGTAAGGCAACATAGGTTTACTGTATTTTGTCTCGTTAAATTTTTTCGGTCACTCAATTATATTATATCTTATACTGCtaagatattattttattaatgtaTATTTTATTTAGTAGTTGATTTGAAGTTCAATGAATGttttaagttattttcatCATGGGAGATTTTCGTCGTATTTTTATAATAGTATACAATATAACAATAGAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR036273 all species →	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR053012 all species →	Family	Endoplasmic reticulum-organelle contact domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46384 all species →	MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0140284 all species →	Cellular Component	endoplasmic reticulum-endosome membrane contact site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09229	ZKSCAN; KRAB and SCAN domains-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.