Gene detail

Detailed information of XP_065059565.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:3523040...3532299
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065203493.1

ATGGCTGTTTGTCATGGATGTGACGCAACAATATCAGACGAATACATCTTCCGAGTTGCACCAGATCTTCAATGGCATTCTTCCTGTCTACGATGCTCCATTTGCAACGCCAGCTTGAGTTCTTCACCTTCTTGCTTCGTAAAGAATAGCAGTTTATTCTGTAGAGACGATTATGAAAAGGAGTTTGCTATTCAATGTAGAGGTTGCAACAACACTATTGAAAAGAACTCTTTGGTAATGAAGGCCCAAAGCCATATTTTTCACGTCGACTGTTTCGCGTGTGTGGGTTGTTCTGGGCGACTTTCACCCGGCGACCAGTTCTCCGTCAGCAGCGATGGCCTGTTGTTCTGCCAATCCGAGTGTTGCATTCAAGACCGAGTGAGTATTTCGGAAGACAGTTGGAGTGATGTAAATAGCAATGTCAGTATTGGAACATTCAAGGACACAGCATCGAGTGTCGATCTGGAAACCTCTCCAATGACATCAAACTCGGACAAGGAAGTAAAAATcgaagcattttcaaaagacagCAAGGGTAAAACgacaaattcaaagaaaaactcaAAAGATAAACCTACTCGAGTTCGCACAGttctaaatgaaaaacagcTTTCAACGCTGAAACGTTGTTACGCAGCAAACCCGCGCCCTGATTCTGTGATGAAGGAGCAGCTTGTAGATTTAACTGGACTAAGCTCGCGGGTCATCCGCGTGTGGTTCCAAAATAAGAGATGCAAGGACAAGAAGAAGATGATGCTAAATGGCGGTGACGGTGGCAAGATTGGGGATATTTTGCAGAACCGAATGTCAATACACTCGTCTTCTATTAATGACGAAATTAGCTTGCCTGGTTGTTCTCCGCCTCTACCAGTAACTGTGCGTTCATTGCCTCTTATGTCGATGTCGTCACACGTTGCAAGCAGCTATGGGAGACAGCATAGTCAAGACCTGAGGCTGATGGCTGCGCAGCCAGAATACAGGGAGGCCCCGTCATTTGCAGACTATAACCTGTGGAACCGATACGACAACTTCGATTACCCGTATCACCAAGAAGGTGTGTCGTCACAAGCCAGCCATTACCAGCAGCTTGTTAGCTAAAGACAAACCATTGTAAAATATCTACTATGGGTAATTAATTTGTCAGGGCGAGAAAAAGTTGTGATAATACTGATAATGATAGGGTGTTAAAAATAGTAGCTGAACACCATCTGATGGACATCTCTTTTGTCTGAGGACGCCTCTAGGTCAGGCTGGAACTTTGGTCCTACTGCTTTTGTGGTGTCGATCCCCTGTGCTCCCAGAAAGTTGCCACATTAATCTATTGTCAAGCTATTTTAGAGCAGAAACGATTTCTAAAGGTTGATTTATGATCACAGATAACAAATGCTATTCCTGATCCAGTGCAAACTTCAGTTCACTTAAGTTTAACTTTTAAAACCTTGCAAGCTACTTATTCCTGACTTGTACAGTAAATTCAAATCAGGATTAAAATCATCCATTGAGAATTAATTGCTTTTTGGGTAATTTTTCACAACGTTGTGTATAATGTATATATAAAGCTTTCAGAACATTGGTACAAGGATGAACTGGTTTAGAAATAATTAGATTATAAACTTGCTTGCTTTGCGTAAGtttaaacatatatttgtGAGCATGTATTCAGCTGTGACTGTTACTAAGTGACGCGATTTTCTTTGTATTCAAAAGCTTGGTAATCGCTTGGGTTGCAGTTAATTAAAGACATCGCAGAACAGGCAACTGCGAACCATTTTAGTACTTTTATCTAATGCAATACATCAATTCAATTaacggcctcgttttgaaaaatacttgaaaCTTCTATGTACGCAATTGTACTTCAGATTCGGATAAAGGACAACATTTTAGTCTCGATCTCAGTCTTTATGGTGCTAGTGCTCGTggtattcatttttgataaaataaggTATAGAAATTCAGAGGTTTTACTATGATTAGCGACTGAGGAGGACGAGATCCTCCGCAAGATTAACAGAGGTAGGCGAGGCCTTCCGCAAGTTTTCAACTATTTCTCCTCATAAAATCTACGTTTTGTATGTGCCCCAGCTTTGGCAAAACATATGTTCATAGATCCTAGTTTGAGGTAAAAGTAAAACAGTCGTAAAGTGAGGTTTGGAgtaatttacaaaacataacGAATTGGTGTTGTTACTTGTTTTGTTTAGTTAAGTTTTATTTACTtgcgtttcaaacaaactGTAGATGTAGAcatttgtaaatatattataatGAATAATGAATGGCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR047169 all species →	Family	Insulin gene enhancer protein ISL-1/2-like	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24204 all species →	INSULIN GENE ENHANCER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0007409 all species →	Biological Process	axonogenesis	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0048665 all species →	Biological Process	neuron fate specification	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065059565.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.