Gene detail

Detailed information of XP_065059591.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:13238777...13260100
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065203519.1

CCATTGAATGAGTTGGGCCTGGAAGCGAGTTCAGAACGCGCGGAAAGCAAGGAGCCTTTCTGTACCTAAGCAGGGGGAAGTGATTCAATGTCAGAAAgtgtgtttttttaagaaatcgagggaatttagaaatattgtctattttaaagtaaaatggaAAGTACACCGACTCTTTCGTCGACAAGGCCCGCTGCCAAAGTCACTCCTGCAAGTTTGCCAAGGGCACCATCACCAACAATGCGGAGCCGAttagaagaaaaggaagaactGCAGAACTTAAACGACAGGTTAGCCGTGTACATCGATAGAATGAGATCATTGGAGGAGAAAAACAGTTCGCTTACTGAAGAATTTGCTTCGTTGGAAGAGAAAAAGCAAAGCGAATTCGTCGAGGTAAAGAGCATGTACGAGAGTGAGCTAAACAATGCCCGACAGCTTTTGGATGAAATATGCAAGGAAAAATCTAAGATTGAGTTGGAAAACGCAAGAAATCTAGCGCAAGCCAGTGACCTCAAAAAAAGGTTGAGTTCAGAGCAGCAAAATCTCattaaagcaaataacaaGAATGCTGGATTGGGCAAAAAGCTAGCTGAGCAAGAGGCACTCATCAGTAATTTGACATTTGAAGTTAGCAGTTTGAAGGAAGAATTAGAAACTGTCAAGAAAGAGAAGGAGAATCTTCAGGACCTTGTTCATTCCACCAGCCATGATTTGGAGGCTCGCACTTTGGAGAAAGTTGACCTTGAGAACAGAATGCAAACTTTAACAGAAGATCTTGAATTCCGAAAaagaacatttgaaaagGAGTCTGTGGAGTTAAGGaaacagatgaaaagttttgaaagcagAGTAACCATTACAGAAACGGATTTCAAGAAGAAATATGATACAATCATGAGAGATAAACTGCAGGAGCTACGAGATGAGTTTGAAGAGGAAGCCGATAACATAAAGAATGACGTTGATAACACTTACAAGCAAAAGgtGGACGACTTAAAGAATAAAGGCGAGAAATTGAAGGAGCAATCGAAACATCAGCTTATCATGATCAATGAATATAAGTCTAGCCTGGAAACTCTGAAGATTGAAAAGAGTGTTTTAGAAACTGAGgtaaaatctCTGAAGAAGCGTATTGATGACCTAGAAACGCTTCGCCACAATGAAAGAGACGATTTCAACAAGCAGCTTGAAGATAAAGCAGATGAAATACGAGAGTTGAATTGTGCCATTGATGATCGTGATAAGGAATATGAATCTCTCATGGACATCAAAATTGCTCTGGACCTAGAGATAGCAGCATATAGAAAATTATTGGAAGGCGAAGAGGAAAGaCTACAAATAACTCCTACATCCACTCCAAGCCGAAAACGTCCAAGAGTAGAAGTCGACTCGCCTGATccttcagttttgaaaactgcaaaaggaagtattgaaatttcagagTGTGATCCATCTGGTAAATTTGTGAAGATAGCGAACACAAGCTCTACTGATGAGCCTTTAGGAGGTTGGTTAATCAGGCGGGTTGCTGACAATAAAGATCCTGTGGAATTCAAGTTCAATCCAAGAAGCGTTCTTAAAGGTGGATCCGCCGTATTGATCTGGAGTGCATCCTCTGGTTCTAAACATAAGCCACCAACAGATCTGCTGATGAAATCCAGTGACTGGTTTCCAGGCCCTAATGCTGTAACTACGCTCCACAACTCTGAGGGTGACGTTGTTGCACAACTGACTGAAGCAAATCTTGGAACAGCCACAAGTAAGCAGAGATCTCGCCAAAAGCGTACTCTAGATAAGAATGAGAGCTGCACTGTCTCCTAATCATGATCCAGTCTCGTCACCATGCTCCAGTCTGGAAGAGGTGTAAAAGctgcaaataaagaaaattgcgGAGGTTCCCACtagaaaactttaaacttGTGTATAACGTACAGACTTAGGCAAATATTCAGTTTTTCcctgtttttattcttgtatCATGTTGTTAGATAGGGATGGGCAAGATACACTTAAAAAGTATCGTACTTCAAGATAACAGTTTTTATACAAACGGTATCTTAtcttaaaatataatgatTAGTCCCATTTCTGGTGTTAGATCGTGTTTTATTTGATCAAGAGCTACAGAAGGTTGCTGAATAGTTTGCTGAATATTAATGGTCCAGctatcaaaaagttttctctgCGTAACTTAGCGAGATTATAGGGAAGACAATTTGTTACTAAGGGTGAATAAGCTATCACCCTCTCCAGTCAGTGCTTGTATGTTTTTCTGAATATGAACGGTTAGGCACGAGTTTTAGAAGACAATTGCAACCTCTCCTTTTTGGTTTCAGAAGACGATTGCAAGCTATTCAGTAAATCTTTCCCGTTCTTCTATTTTATTGGTTATGAATATTCGTCTTCTCTTTCGTTATTTATGCGTATAATTTGGTGGAGTGTCTCAGCGATGTAAGTGTTAGGTTGGTGTTAGAAAACACATTAGCTGACTTAAAAACAATAGGTAGACAGTTTTTGTTGCTCTGATATAATAATGTCCCGATCTCCACTGAAAGCTTCTTTGTTAAACTCAATTTGTTACAGTTTGAAGCTGTCAGGGTTGTTTCCAATCACCTTATGTTTCAAATCCTGTTGATTGGTCAATGCTTTCCTTGTTCATACCGACAAGGTTAGTGGTTTAGTCTGGTCAATAGCAAGTATGTATTTGATGAAGGTTGTATTTGATTAAGTATGTATTTGATGAAGTATCTATGCAAGTATGTATGAGACACTAATGAAGCTTGAAGGTCGAGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003420 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00932 all species →	LTD	Lamin Tail Domain	Domain	Interproscan
PF00038 all species →	Filament	Intermediate filament protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001322 all species →	Domain	Lamin tail domain	Interproscan
IPR039008 all species →	Domain	Intermediate filament, rod domain	Interproscan
IPR036415 all species →	Homologous_superfamily	Lamin tail domain superfamily	Interproscan
IPR018039 all species →	Conserved_site	Intermediate filament protein, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45721 all species →	LAMIN DM0-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_065059591.1 in Rhopilema esculentum.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07611	LMNB; lamin B	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.