Gene detail

Detailed information of XP_065059648.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:8954648...8955829
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009080 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09282 all species →	Mago-bind	Mago binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015362 all species →	Domain	WIBG, Mago-binding	Interproscan
IPR039333 all species →	Family	Partner of Y14 and mago	Interproscan
IPR036348 all species →	Homologous_superfamily	WIBG, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22959 all species →	PYM PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035145 all species →	Cellular Component	exon-exon junction complex	Interproscan
GO:1903259 all species →	Biological Process	exon-exon junction complex disassembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14294	WIBG, PYM; partner of Y14 and mago	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.