Gene detail

Detailed information of XP_065059705.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:8577725...8589559
NR annotation: no NCBI-NR hit recorded
Species abbreviation RESCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135687141

ATGGAACGTGAATCATATAAGAAAAAAAATAAAAGACGGTCAAGATCAAGGTCTCCAAGAAGTCGCATGTCGAAGGATAGTGGATGTCGTTCGAAAAACCGGGCGCCCTCCCGCTCTCCAAGCAGATCATCTTCAACAGACAAAGATAAGAGTATCATGAGATATAAAGAAGAAAAAAGAAAAATGAAAGAATTACTGAAAGCAGTGGAGACTCCTGAAGAGAAAAGAGCCAGAAGGCTTGCAAAAAAGGAGGCAAAAGAAAGAAAAAGAAAGGCTGAAATGGGATGGGATGAGGAGGACTTGGGGTACACTAATACAAATAACCCATTTGGAGATCACAACTTGAGGGAAACCTTCACATGGCATAAAAAAAATGAATCGGTTGGAATAAATGACAAAGATGAGCAAGAGCGATTTCAAAAAAGAAAACAAGATGAAATGAGGGTTGAATTACAAAAGGTGAAGCAAAGAAGAATGGAAAGGGAAAGGGAAAAGGCAGCAAGAGATGAGGAAATGACAATGATGCAAAGAGAAAAAGAAGCAGAAATGTTTGAAGTTTGGGAAGAGCAAGAGAGTGAATTTCATTTGCAACAAGCAAGAAAAAGATCAAAAATAAGAATCAAAGATGGAAGGGCAAAACCAATTGATTTATTGGCTGAGTATGTCAATCCAGAAGAGGAAGATTTTGAGCTACAAATGAATGAGCCATATAGTGTCCTTGTGGGATTGAGTATTGAGGATCTCGAGGATTTACTAGAAGATATCAAAGTTTATAAACAACTGGAGCAAGGACACAATGCAGAATTTTGGAAGGACATGACTGTAGTTGCAAAAGATGAGCTTGAAAAACTCAAAGCAAAACGCCAAGAAGGAGATCTTCGTAATCAAAGAGAGGTGATAAACACAGCAGTCAGAGCAGATGTTACAAGCATATTTAAAGGCAAAACTCATGGACAATTAGTGGCAATGCAAAAGCAAATCAAAGAAAAAATCAGTGCTGGTGGTCCAATTGATATTGGCTACTGGGAATCATTATTACAACAATTGAAGGCTTTCATTGCAAGAGCTCAATTAAAAGAGAGACACCAGCAGAAGTTAAGAGAAAAGTTAGCAGAACTAAAGAAACAGAGTGTAAATGAGTCTGATTCTGATTCTGAACCTTCATACAAACATGAATCATCCCCAAGAGATAGTCCTGGGCCAAGTAGGCAGCAGGAAGCCTCTCCAGCAGAAAGAAAAGATTTGCCAACAGAGGAACCAAATGAAGACAAAGAAAAAGAAGTGGAAGGAAACGAAAAAGAAGTGGAAGGAAAAGAAAAAGAAGTGGAAGGAAAAGATGGAAAACCAAATGTTACACAAAGATCTGAAGAGGAAATGGCTGTAGAAGCATACCAAACATATGAAGCAGGATCTTACAGTCCACGCTTAATACCATTTCAAGATGTGGAAGAGACTAAGTGGATTGATCATGATGATGATTTGCACAGACTGGGCTACCTTAGAATGCAGGTGCAGTCTGGGTCAACCGTTGATGAGGAAGAAACATCAGACAAAGTTTATTCATCAGAGGCAACTAAAATCCTAGGAGAAGGAGAAGAGGCCTTTAATGTCCCATTCAACCTGAACAAAAAGACTTACACATGGACTGACAAATATAGGCCAAGAAAACCAAGATTCTTCAACAGAGTTCATACGGGCTATGAATGGAATAAATATAACCAAACACATTATGATAGTGACAATCCACCTCCAAAAATTGTTCAAGGATACAAGTTTAATATCTTCTATCCTGACTTGATTGAAAAAACAGTAGCTCCTGAATATAGTTTGACACCAATAAAGGAGGATCCAGATTTTGCTATTCTCAAATTTTCTGGTGGCCCACCATATGAAGATATTGCTTTCAAAGTTGTTAACAGAGAATGGGAACTTGCTCATAGACATGGATTTCGATGTCAGTTTCAGAACAATGTGTTTCAACTTTGGTTTCACTTCAAGAGATATCGTTATAGAAGATAG

Transcript

rna-XM_065203633.1

ATGGAACGTGAAtcatataagaaaaaaaataaaagacgGTCAAGATCAAGGTCTCCAAGAAGTCGCATGTCGAAGGATAGTGGATGTCGTTCGAAAAACCGGGCGCCCTCCCGCTCTCCAAGCAGATCATCTTCAACAGACAAAGATAAGAGTATCATGAGatataaagaagaaaaaagaaaaatgaaagaattacTGAAAGCAGTGGAGACTCCTGAAGAGAAAAGAGCCAGAAGGCTTGCAAAAAagGaggcaaaagaaagaaaaagaaaggctgAAATGGGATGGGATGAGGAGGACTTGGGGTACACTAATACAAATAACCCATTTGGAGATCACAACTTGAGGGAAACCTTCACATGGCATAAAAAAAATGAATCGGTTGGAATAAATGACAAAGATGAGCAAGAGcgatttcaaaaaagaaaacaagatgaaatgaGGGTTGAATTACAAAAGGTGAAGCAAAGAAGAATGgaaAGGGAAAGGGAAAAGGCAGCAAGAGATGAGGAAATgacaatgatgcaaagagaaaaagaagcagaaatgTTTGAAGTTTGGGAAGAGCAAGAGAGTGAATTTCATTTGCaacaagcaagaaaaagatcaaaaatAAGAATCAAAGATGGAAGGGCAAAACCAATTGATTTATTGGCTGAGTATGTCAATCCAGAAGAGGAAGATTTTGAGCTACAAATGAATGAGCCATATAGTGTCCTTGTGggaTTGAGTATTGAGGATCTCGAGGATTTACTAGAAGATatcaaagtttataaacaaCTGGAGCAAGGACACAATGCAGAATTTTGGAAGGACATGACTGTAGTTGCAAAAGATGAGCTTGAAAAACTCAAAGCAAAACGCCAAGAAGGAGATCTTCGTAATCAAAGAGAGGTGATAAACACAGCAGTCAGAGCAGATGTTACAAGCATATTTAAAGGCAAAACTCATGGACAATTAGTGGCAatgcaaaagcaaatcaaagaaaaaatcagtGCTGGTGGTCCAATTGATATTGGCTACTGGGAATCATTATTACAACAATTGAAGGCTTTCATTGCAAGAGCTCAATTAAAAGAGAGACACCAGCAGAAGTTAAGAGAAAAGTTAGCAGAACTAAAGAAACAGAGTGTAAATGAGTCTGATTCTGATTCTGAACCTTCATACAAACATGAATCATCCCCAAGAGATAGTCCTGGGCCAAGTAGGCAGCAGGAAGCCTCTCCAgcagaaagaaaagatttgcCAACAGAGGAACCAAatgaagacaaagaaaaagaagtggaaggaaacgaaaaagaagtggaaggaaaagaaaaagaagtgGAAGGAAAAGATGGaaaaccaAATGTTACACAAAGATCTGAAGAGGAAATGGCTGTAGAAGCATACCAAACATATGAAGCAGGATCTTACAGTCCACGCTTAATACCATTTCAAGATGTGGAAGAGacTAAGTGGAttgatcatgatgatgatttgCACAGACTGGGCTACCTTAGAATGCAGGTGCAGTCTGGGTCAACCGTTGATGAGGAAGAAACATCAGACAAAGTTTATTCATCAGAGGCAACTAAAATCCTAGGAGAAGGAGAAGAGGCCTTTAATGTCCCATTCAACCTGAACAAAAAGACTTACACATGGACTGACAAATATAGGCCAAGAAAACCAAGATTCTTCAACAGAGTTCATACGGGCTATGAATGGAATAAATATAACCAAACACATTATGATAGTGACAATCCACCtccaaaaattgttcaagGATACAAGTTTAATATCTTCTATCCTGACTTGATTGAAAAAACAGTAGCTCCTGAATATAGTTTGACACCAATAAAGGAGGATCCAGATTTTGCtattctcaaattttctgGTGGCCCACCATATGAAgaTATTGCTTTCAAAGTTGTTAACAGAGAATGGGAACTTGCTCATAGACATGGATTTCGATGTCAGTTTCAGAACAATGTGTTTCAACTTTGGTTTCACTTCAAGAGATATCGTTATAGAAGAtagaatttcttttgattatttGCATTGTATCACTTTGGTATTCTGTTTTATATAAATCATTAACTCTCTGATGATATAGAACCCACTGTATTTTTGGTTCTTTCCtgtatgatttttttcaaagttcagaaaattaaactttaaaataactT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10312 all species →	Cactin_mid	Conserved mid region of cactin	Family	Interproscan
PF09732 all species →	CactinC_cactus	Cactus-binding C-terminus of cactin protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018816 all species →	Domain	Splicing factor cactin, central domain	Interproscan
IPR019134 all species →	Domain	Splicing factor Cactin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21737 all species →	POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25058	CACTIN; cactin	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.