Gene detail

Detailed information of XP_065059963.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:4405383...4415452
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135687351

ATGGCTGATGGAGGGACAGGTTTTGATCGAAGTCATAGCTTTACATGGAATTTCTCAATTTTGGAAGGAGTGATGGTGAAGATAAGCGATAAATTCAGGCCACCAAATAAGATTCATTTACCAATTGGATGGAAATCTTTTGAATATGAAGATGATTTTGAGTTTGATTTCAAATTTGAAGAAGATGTTATCAAGTTGGCAGAGCGAGAGCAACTTCAAGAGGAGAGTGAGAAGGAATATTCAAGTTTAGTAAATGCTACAGCAAGATCACTGGATGATAACATTGAAGAAGCAAGCATTGATGACAATACTGATGAAGATGAAGACTCACTACAGAAAGCAGATGGTGCTGCTTCAGTCTTTCATAATGATGTTTCTGAAACTTCAATTCTAGAACCAGTCAAGATCAACAGTGATCCACTGGCTAAACAAGTAAATAAAAATACTTCAAAATGCTTTAACTTTTCAGAGTTTGAAGATAATTTTGCAACTCCATTTGAACTTGTTGAGCTACAAACACTTGATGATATTAATGAGTTGAAAAGTGTGTTGCAGCCTGGCTGTAAAACCAACAAAAGATCTAAAAAGACCAAGAGTGATGACAATGTCGAGTCTCAAATTGATTTTTCAATCTTTAATACTCCAGTGACAACAAATCAAGAACCAGCTGAAGTGAAAACTAGTAAGATAGCTACAGCATCACTGATACCTGATATTGAGCCAGTGCAGTCTATGGCAACAAACACTACTTTGCCATTACATCTGCAGTTTGATCAAAGGCAAAACGAAGTGCTACCTGTTTCATCACAACCATCTGCAAGCTTGCAGCCTGGTCAGCCATTTGATTCACTTCCAGTGTCTTCAAATTACCAGAATATGAATCAATTTAATCATTGTCAAGACATTACTGGCCAACCTAATCTAGGGAGGTTCCCAGATCCTGTATTCAAAAACTCATCTTTACCATTTAGTGGCCATATTCCTTTGGATATGAGATTTTCAACAATAAAAGCAAATGATACTAGATTTTCATTGGACTCAGTTTCACATTTAGAACATGGTAATAGTAGAATCAGAGAGTTTGAACACTTGGGAAACCTTAGGGGTGAACAAGGAAAGTCACTAGAAAGAGACAGTGCTTTTTTTCCAAAAAGAAATGAAGGAAGTGACTTAGATCTTAAGGCTAGAGGAAGTCTAAATAAAGCAAATTCAAGGTCTTTGCCAAATCTTGCAGAAGCAGGAAGGATGACAGAAAATGGGGTTACAGGGAGTGCATCAAACTGTTCTCAAGAACCCCTTCTATCAACTTCAAGAATTGACAATATAATGAGACACTTCCAGCTAAACAGACTAAGAGAATTTAATAGTAGCTCAAATCAAAATGATCCTAATGCAACAATTGAAAATCCCCTTCAAAATGATACGACACAATTGCCAAATGTACCTAAACCTCAGTCTGGAATAGTGACATCATTGCAACTATCACCAAGGAATTTACAATTCACGACTAATCAAACATTTGATTCATCAACAATTAGTGCACAACAAGAAAATTCCTCCATGAGTGACACCGAGAGAAGAATGAGATTTCCATCTCTTCAGCCGTTACAGCCTAAAAGGAACGTCAAAACCCAGGAGACTAATCGAAGAAGGAGACTGAGTTCTTCAGAGCCATTACCTCCAATAGCAACACCTAGTCCTCCAAGAACGTCAGGTGCCCAACATATCAACACTTCGTCTAGTCTTTCAAAGCATAGTTTTAAGCAAGAGGAGTTAAGCTGGTTACCAGATCCCACTCCGAATTTGTCACCACAGGAAGCGTCATTGGCAAACATGATCACTGGAATGGGATTCTCAAAAGCTAGAACCGCTAGGGCAGTAGAGAGACTGGAGTTTGACGAAAAGGAGATCATCGATTTTCTTCTCCGGGTTCAACAAATAAGTGACTTGGGTTATGATGCAGATGATGTTGAGATGGCGATAATCAACAATAAAAATGACAATGAAACTATTTTGAACTACTTAAGTCACACAAACAAATGGAAGGAGTTAGGTTTTCCTGTTCAAAAGGTGCACGATGCACTTATTAACACAGACAAAGAAAATGAAGCTGTTTTTGAATACCTGACAAGTTTAGATGAATAG

Transcript

rna-XM_065203891.1

ATCTAATCTCATTTGAGTTTTCTGTTGTGCAGCAGAATTGACAGGTTTTAACTACATTTTCATTCCCGTTTGAAAAAGGCACTACCAACGAGGAGAGGAAGAAGTCTGTGGTCTTGACTTTGTGAGATTACATCATATGCGCCAAAGTTTACAAGGAAGAGACTGGGCCCCATCGATAAATGACATTGCGTTCAAGTCTCAGTATGTTGATGCATTGAATTAGTAATGGCGGACGATTAGTTTGCAGCTGCCGGCCGTATTGGCGTCCCATTGCTTTCAGGGTTCTTTTTCGCTAAACTGTGAACTAAAACCAGGAGAAATGCATGCCAGTTAGAGTCTAAACAAGTGCAACTGGAGCTGTGTGGATATGGCTGATGGAGGGACAGGTTTTGATCGAAGTCATAGCTTTACATggaatttctcaattttggaAGGAGTGATGGTGAAGATAAGCGATAAATTCAGGCCACCAAATAAGATTCATTTACCAATTGGATGGAAATCTTTTGAATATGAAGATGATTTTGAGtttgatttcaaatttgaagaagatgTTATCAAGTTGGCAGAGCGAGAGCAACTTCAAGAGGAGAGTGAGAAGGAATATTCAAGTTTAGTAAATGCTACAGCAAGATCACTGGATGATAACATTGAAGAAGCAAGCATTGATGACAATACTGATGAAGATGAAGACTCACTACAGAAAGCAGATGGTGCTGCTTCAGTCTTTCATAATGATGTTTCTGAAACTTCAATTCTAGAACCAGTCAAGATCAACAGTGATCCACTGGCTaaacaagtaaataaaaatacttcaaaatgCTTTAACTTTTCAGAGTTTGAAGATAATTTTGCAACTCCATTTGAACTTGTTGAGCTACAAACACTTGATGATATTAATGAGTTGAAAAGTGTGTTGCAGCCTGGCTGTAAAACCAACAAAAGATCTAAAAAGACCAAGAGTGATGACAATGTCGAGtctcaaattgatttttcaatctttaataCTCCAGTGACAACAAATCAAGAACCAGCTGAAGTGAAAACTAGTAAGATAGCTACAGCATCACTGATACCTGATATTGAGCCAGTGCAGTCTATGGCAACAAACACTACTTTGCCATTACATCTGCAGTTTGATCAAAGGCAAAACGAAGTGCTACCTGTTTCATCACAACCATCTGCAAGCTTGCAGCCTGGTCAGCCATTTGATTCACTTCCAGTGTCTTCAAATTACCAGAATATGAATCAATTTAATCATTGTCAAGACATTACTGGCCAACCTAATCTAGGGAGGTTCCCAGATCCTGTATTCAAAAACTCATCTTTACCATTTAGTGGCCATATTCCTTTGGATATGAGATTTTCAAcaataaaagcaaatgatACTAGATTTTCATTGGACTCAGTTTCACATTTAGAACATGGTAATAGTAGAATCAGAGAGTTTGAACACTTGGGAAACCTTAGGGGTGAACAAGGAAAGTCACTAGAAAGAGACAGtgctttttttccaaaaagaaatgaaggaAGTGACTTAGATCTTAAGGCTAGAGGAAGtctaaataaagcaaattcaaGGTCTTTGCCAAATCTTGCAGAAGCAGGAAGGATGACAGAAAATGGGGTTACAGGGAGTGCATCAAACTGTTCTCAAGAACCCCTTCTATCAACTTCAAGAATTGACAATATAATGAGACACTTCCAGCTAAACAGACTAAGAGAATTTAATAGTAGCTCAAATCAAAATGATCCTAATGCAACAATTGAAAATCCCCTTCAAAATGATACGACACAATTGCCAAATGTACCTAAACCTCAGTCTGGAATAGTGACATCATTGCAACTATCACCAAGGAATTTACAATTCACGACTAATCAAACATTTGATTCATCAACAATTAGTGCACAACAAGAAAATTCCTCCATGAGTGACACCGAGAGAAGAATGAGATTTCCATCTCTTCAGCCGTTACAGCCTAAAAGGAACGTCAAAACCCAGGAGACTAATCGAAGAAGGAGACTGAGTTCTTCAGAGCCATTACCTCCAATAGCAACACCTAGTCCTCCAAGAACGTCAGGTGCCCAACATATCAACACTTCGTCTAGTCTTTCAAAGCATAGTTTTAAGCAAGAGGAGTTAAGCTGGTTACCAGATCCCACTCCGAATTTGTCACCACAGGAAGCGTCATTGGCAAACATGATCACTGGAATGGGATTCTCAAAAGCTAGAACCGCTAGGGCAGTAGAGAGACTGGAGTTTGACGAAAAGGAGATCATCGATTTTCTTCTCCGGGTTCAACAAATAAGTGACTTGGGTTATGATGCAGATGATGTTGAGATGGCGataatcaacaataaaaatgacaatgaaACTATTTTGAACTACTTAAGTCACACAAACAAATGGAAGGAGTTAGGTTTTCCTGTTCAAAAGGTGCACGATGCACTTATTAACacagacaaagaaaatgaagctgTTTTTGAATACCTGACAAGTTTAGATGAATAGCAGTTAAGAGCGTAAGAAATTCCGGCATTTATTGAAACTGGCAAGCAAAGAatgtatgaaaataaatttctttcctgTAGAAACCAATCTCCAGTATTAATCAGACTCTTTCTAAGCTTCCATCCgaaattcctttctttaatGTTGTAAATTATAGATATAAGTTCCTTACTATGAAGAGCTTAAATACTGACTAGGTCgttagtttgaaaaaaagggcTGTATAAACActgtgaaaatgtttcaatttgtGCATGGTAAAAGGTATTTCAAACACGATGTCTGCACTGTACAACCAAGAAAGCCGGTTTTGTGTTTCTGGAATTTGTAGAAATTGTggaatttagtttttttaatctgttttcaaCATAGTTTTCAGCCCATTAAAGCGAACAGCTTTCTTAAAAACATATCTTACTATTTTAAGATTGATGCCGCTGTATTTCGACCACTATTCCAGTGGCGgaaattgagcattttttcTGGGggtggtggggggggggcaaaagccaacaaaatctttggattttggattttgaagTGACACATTTTTGGTTGTCATACTTTGTGTATATTTTCATGCATACAAAGTTTGCAATGCGTTTAAATCTGTCAgttgttctcttttttttcttttctggtTTAATCGTCAATAGCTGACCTGTAGTGAAGTAACAATTCTTAACAGCTTTCTTTGCGCTACATGTCCAAGCATAAGCCGCGTGcccctgagccccccccctccccactgCTACatctttgatttcttcttccacataataactttttgaaacattcgCAAGGTCCCCCTCTCGGcgtatttattttgttgataaattttttattgtggATATGAGTTTATTCTGGATATGAGTCATTCTGGATATGCTAGCTTTCGGGTACAACCTAAATTCACAGTTGCGCGACTGGATTTGAGTTTTGCCTCCTCCCTGCTGAGCGTTTCGGCCGTTCTTGGtgtagaaaaaacaatataaggGATTGTTAGTGATTTACATACTCACTTGTCTCCTTGCCGATAAGGGAAACGTGATTGTCAAATCAAAAGttagcctgtgttccagacccctaactttGGCTTTGCCCGCAGGACTGCCAAGGTTTGCCGGCGAAAATTTTAGCCGTGAGCAAACGAAGTTTCTTTCAACCAAAACcagatttgccgacaaattCTTACCTGGCgatcgcccccccccccccacacacaCCCCCACAAATTCCGCCACTGCACTATTCATATCGTAGGTAGGTAAATTACAAtatcttataaaatattttttcggCTTATCGTCAATTTTCAGAATAGAATGAAAACCAGTTATCCATTTAGATTTCATTAATGATGAATAGAATATCCAACACAGCGAAAAAAGGGACATCTTTATGTTTGGTTAATCATTGTACccaaaatattaattaatttattaataAGTAATTCATTACTTTGAGAATCATTGCCTCTTCCACCATATATCTATGATGGAATATCTTTGTAATTTAAGTTGAAAATTGCCAGTTTACTGCTTAATTAACTTAACGTACGAAACGGTGAGACTTTTTTCCTTGTTTACTAATGGAATGCCCAATGTTACGAgtaaatatttacaataatCAAACTTTGAACATAGTTACAAAGGATATGTGGTTTAATTGTATATGGTTTAATCCCAAGTTTAAAATGACGTCAAAAAGCATTCGAATGtattatttgttgtttataaTGGTTGTCTTGCTCTTCTATACATGAATGTATTACGTTGcgtaaaatttttgcatttaattaATTGCCACATAATTGCTCATATTAAGAGTAATTTGCTCTTATGTTAAATATTTGTTGTAGGTGACAAAAAGCGATACTgttctttaacaaaaaagctCTTGATAACACA

Protein

Pfam domain

No Pfam domain signature was recorded for XP_065059963.1 in Rhopilema esculentum.

InterPro

InterPro term	Type	Description	Source
IPR042575 all species →	Homologous_superfamily	Ubiquitin-associated protein 1, C-terminal	Interproscan
IPR038870 all species →	Family	Ubiquitin-associated protein 1	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15960 all species →	LD44032P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000813 all species →	Cellular Component	ESCRT I complex	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043162 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24629	UBAP1; ubiquitin-associated protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.