Gene detail

Detailed information of XP_065060414.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:10121964...10134940
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065204342.1

GGTTGAAGTCGAGATAATAACAAGTCATTGTAGCATTCAAGATGGCGCCGTCACAGGCTGAAACTGACTTCCGCAGACTTTTAGGAAAATGTGAAATAATGGTTTCTGATGCTCACAAGAACGGAGGAAATATTGAATGGAGAGTAGAAAAGtATCTTGATGCACTTCAAGCCAGACTTCAAGACATTGGAAGGCAGTCAAAGAAGCCAGACGATGACATACTGCgagaatataaaagaaaagttgatTTCTTACAAGGTATTGTCAAGGCAGAAAACATGCCAACCACAGAGTCAAAAGTACGAGCTTGCCAGCAATTAATTCCTGTATCAACAAACCTTGTCAACGACTCAACCAAGGATGGTGAGAAATTAGGAACACATCTCAGCAAAGATGTTCACATACAATCAAAAGGAAGATATCAtaaagaaatgagaaaagaGTTATTAGGATATGAAGATTCTTCCAATGACCTGAGACAAAGAAGgGGAAAGTCTTCGTTTGatgatgaaacaaaagaaaatgttgatgatattttgaaatatcaccATGACGCACAAGAAAAGATTGCagatgaaatgataaaaatggcGCAAAGCATGAAACATACCTCACTCATTGCTAATaacatcatcaaaaaagatgaaaagacccttcaaaaatcaacaaaattagttgataccaattttcaaaagttgaagaaaGAATCCGACCGGCTGGAAGAAATGAATAAGAGAGGGTGTTCATGGTGGTTGTGGATTATGTTAACTATTGTTTGcgttgttttctttctaatgattttattcattaaattCTTCCCTGTTCGCAATAAGTAACTACTCGTCATCAATCTATCACGTCAGTGCAGTTTTATATCATGCCCAGCCAGGGTGTACGATAGCGGGGATTCAGGGGGGGGTCGGTTCCTTGTTTAAGGAGAAAATTGGCCCTTTTCTACCGTTTTTTGCAAGGACCCTGCTTATAGTTCTCATAGCATTAGACCCCTGCGCTCAGCTTACAGTAGTATAGATACTGAGTAAGGATTCACGCGACTCTATATTTGACTAAACAGGCAAAATCTACCACGATAACTCATCTTAGCTATTGTGAAATGACAGGCAATCATTCTCGATTTCACATTCGTAATATTGCCCATACTTTAATGTTATAGAAGGCTACCAATCAATCTTAAACTACCATTTCCAACACTAACCCATCAATCTTAAACTACTTGAAGCAACCTACAAatgctagaaaaattttcgaGCTTTACCCTCCCTTTAACACTCTCTTTTTAATagctttcttttctcttaAATTTAGCTATATTGCCATCTAATTTTATGTTAGGGCTGTGGgtttgatatgaaatataataGTTTCTGCACTACCGTACTTTTATCTTGTCAatatatattcaatatttttggcgaaatataaaataaaaacaaaaattaaataacaaGCTTTCCTTGTAGTGTTCTAGCATTTATGCATACAATTACTTCAGATCGAGACTCTCTCCGCAGTCTCCTCTCTTTGagtgaaaaaatgattttctttttgaaaacctgTGAATGCGAATAACAATTTTCTGCTTCATGAATATATGCTTTAAAAGGCTCCACAAAcatttgtcaaaaagaaaatctgaaagttttggaaagaaaatctCAATCTGGTTTTGATTTGTTAACAAGACACTAAAtgtcaaagtttttatcttatgtgtaagaaggaagaaccgcaggataggctgtccgccggattctgtgaatcttgcaagTGCTCcgatgaagccctgtatgccggggcgaaatattagtattccttaaatttaatttattttgaaaattttatctcgtcacattggattctcgtcatcgtattgctttgtttctgaatatcttttttatcttatgCTTCAACTACCAATTATAGAGAACATGCTTCAATGTAAGGTTATGAatgtttgttaaaattcaacttttgcaGCTTTAGGAAGCTGGGTtctggtttttaaaaagtttcatcttTAATCTGGTCAAAAAGCTCTAtattaaaggacaagtgacacgcttttggcgccaaatttttttttccttttaacttaaagtaaaatgctgtatgagagtgttgttgaaatatttttcctttctgatttcattttcccacttaaaaacccttttgaaattatggcgggaaatggatcacgtgacaccgtgacgtagatAATTTGTGATAATTTcttattgctgctactggtatagagtgcaatattaacgtttacaacacgcttGTAAACGAATACAGTTGGTCTGGACCTGTTGCGTCGTGTTTAGTAAACTCTCTATCAATTACAGGAAAAttccgagttatcacaatgtgcgtcatagggtcacgtgataaaaagcaaaatcgcgccccctgcgccccttgattataattttttgttctaagccaggaaaaacttacttctaaaagatgatctataagttaatgaaaagaaaagatagggtgaaaagtgtgtcacttgtcctttaaacATTCGCTATAGATTATTGTATGAATAATGTAAtgataatagaaaaaataatttttcacatttacaAAGGTTAGTTTTGTTCTGTAAATTAAATTACTaatatcaaatatataaaacaaaagttGGTATctcaagaataaaatttttagaatttacataaattaaaagcaaacaaattaaagtTGAATTCTTTACAAGAATAAAcgttaaaaatttacaagaaaaagtttaaaatagcACAAGAATAAAAACGATAATTGATACATGGTTAAAAATCTAGATTTGTGTTTGTATGTTGACTAATGTTTTTTGGGCTCTTCGCTGAAATTCTTGTAATGTTCTGAAAAGTGGACAACCAAGTATTTGAATCAATTCGAGATTCTATTCTGGATTATTCTTTGTCATTTGTACTTTTAAATATACTAtaataagtaaaaataaaataatatttatagTAAAAATTGTTAGTTAATTACTCCTTTCAAATAACGTAAGTGATGTGAAAGATGTTGCTAagaaatgatttcattttctcaatttttagaTTACGCTGGAATAgtatctttattttgatttcaatttctcttcaaattcaaagaatttttcgtTTCCAATCCTTTTTGCAGCTCTACACTAGACGGGAGCCCCCGATCCAACTCGTTCAGCATAGTTTCCCTTTCTCAACAATCTATGGATACGTCCGACTGGGCACTGAAGACCAGCTAACCAGTTTCTTTTATGTGTATTTTTTAGGATTTAAGCTTACAGGAAAAAGTGAAAGCGTACTAAAACGAATATTGACAAATTCTAATTATATCTCTTTGATCGAGCGGGTGTAACTTCCTTGAGAAATACTTATCAGTGATATCTCTCCCTCCTTCCTTGGCCTTGTCGTGTGGAAGATGCTTCAATAGAATTACACCTGCTGTTAAATTGGTACAGGTGCAATTATTGTAACAGAACATTTGGTAATCTCAAGTTTGTATTTTCAAGACTATATCTTTGGGTTTCTTACTAGGTGCTCCTTTATGTTACCCAGTTGTTTAATTAATTAGGGTGTTGCCTCTGTCATAAACcctttttttaagataaagaaTACATTGGTCCTTTCGAATAAAATGCGGGCGTTATCGGTTCCAatttttactgtattttaaGATGAATGCAATATAGCCTGAATGCATTGTTGATTCATATCCACAATTCGttaaataacaatttttgtaaaaatgaaattttttgtaaatgagCAAAATCTTATTGGTTTTTGTTTCCAACCATTCATAGGATCCCTTGCTATACTGCGTGCAGATTTCAAGCAAGTTCGCGGATTACACTAAACAGCTTATCTTTAGTAACGATCATGCTTTTGTCAGGGAACCGTAAGCTTTGGATGAGCTTCTTCCCTGCAGGTGTTCCCCGCCGTAAACAATacttttcttccattttctgCCTTGAGGCTTTTCTACCTTAATGATTGGTTAAAAGAAGTGAAAGGACAGGCCAAGCATTGGATGcctgttttccattttctaatGTTGAAGACTGGCTCTGCATCACGaATCTTTAAAGCAGCTGAAACAGGTTTGGCCGCTTAGAATTCCACctgtctacacagtagcggaaatgcaaaatttatcacgaagaaagaaatttgaggTTAACTTGATGGTGATTGCTTCATTTTTTCGCATCATTCTcgttttcatgatttttcgCAGAGTTGGAAAGCAAGTGTCTAGTTTTATGCAATGAAATTCGTAATATTAGCCCCGTTAAAGAGCTAGGAATTCACGTTTCAATAATTGCTGTTCTCAATCATTCATTGCTCCATATAACAGAGTCCTTCTTGGTAAAGAAAGTATAAAACTCCGCCAAGACAACAACGAAGGCTGCTGCACATTCGCAGCTCATAAACAGTGCAGACAGTGAAGCAAACCAAAACAGCATCGTCGAAAAGCTGATTTCGTTGATGTTGGCAAGAGAGAACGAAGAACCTGATTGATTGAATTATACGTGCACGTATCACACAGTAATATTAACTAGTGAATATGGTTCTGAAATTTCACCTGGTGTTTTATTTACACTTTTGTTAAGGAAGGATGTTGCTACACATTTGAATATCATAGTTTTTTAACCAACTATTACATAATTATTGCAATTAGTTGTTAAAGAAAGAGGTGGTTATTTATAAATGATAGAAATGTCGAGCGAAACGTATAGCTGCATAAACACAGATGTGCTATTACGTCGAGGCAGTGACCAAGATTCGATGCATGTTACAGCATTTCTGGGTGTCTATATAACATTTGGTGTCGTGTCTACTATTCTTAATACCTTGGTCATTGG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003469 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09753 all species →	Use1	Membrane fusion protein Use1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019150 all species →	Family	Vesicle transport protein, Use1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13050 all species →	USE1-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08507	USE1; unconventional SNARE in the endoplasmic reticulum protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.