Gene detail

Detailed information of XP_065060428.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_217:8640637...8644031
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065204356.1

AGTCAACAACATTTCGCCTCCGCATTCTGAGTACAGACGTGAGATTATGGGCCACACATCTGCAAAGAAGTAGGAACTAGATTCtagtgaattttttattttcacgtTACACAGCGTAGAATATACAGCAAATACATGCTGCAAAGATGAAATATGAAACCATATTTATCGAGGAAAGATCGCATTTTGATGCTACGTTTTGTCTTCTGAATGAATTCCGAGAGACAAATGAACTTTGTGATGTTTTCCTCGAAGCCGAACACGTAAGAGTGCCTGCTCACAAGGCAGTTTTGGCCGCATGTTCCCCATATTTCAGAGCCATGTTCACTGCAGACTTCCTGGAAGCTTCGTTGCCAGTTGTTCAAATGCAAGGTGTGGACGGAAAAGCTTTAGAAGACATTGTGAACTATTTTTACACAGGAAAACTGTGTATTACTCCTGACAACGCGGAGGGTGTTCTAAGTATAGCCAATTCACTACATCTGGATAATTTGGTAACAAACTGTGAGACGTACATGCGAAGAAACATGTCCTTTCAAAATTGCATGGCATTGTATTCTTTATCAAAGTATTATGGACTTGTTGGACTTGATCAGCAAGCACTGCGTTTTATATCATGGCACTTTGCAGAGATCCCTCATGAAGAAGGGTTTTTGCTTTTACCAACTGATCATTTGAAACAGGTGGTTGCCAACCAGTATTTGAAAGTTCCCTCTGAAGAATTTCTGCTGGAAACGGTGATGAAATGGTTGTTTTACGATTTGGAGAAGCGGAAAGTTGACTTTAATCAAATTATACCAGAACTAAGGTTTTCATTAATGAAACCAAATTACTTGTCTGATAGTGTCAATGTCAAGTTCTTAATGAAGAACTATGCCTTGGGGAAACAAATTGTTCGAGAGGCACTTCTCTATCAATCAAAAAGAGCTGAAGTGGATTTGGTAAAGGCTCAGGAACTAAAAGCAACAAGGTTCAGGCCTAGGTCAGCCTGTGAGGACATTTATGTCATTGGAGGCTGGTCTAATGGACAAAAGCTAGGGACAGTACAATGCTTCAACCTAGACACCTTGCAGTGGACAACATTAAAAGCAATGAGCATTGGCCATGCTTCAGTGGAAGATTACTTCAGAGTTGTTGTgtcaaacaatgaaatttattcTGTATCCCAAAATTTGGTGTCTAAATATGATTCTATTGTTGCTCAGTGGTGTAGTATAGCTGAAGGTCCAGGAATACAATGTAAATGGGCCAGCCTATGTGAATATGATGGTAATTTGTACTTGATTGGAGGGAACAGTTCCAAAAcatgcaaatgttttgatacAGAGAAACAAGAATGGCATGATTTACCACCAATGAGATATTCCAGATATTACCCAGGTGTTGGGGTTTTGGGAGGAAAGATCTATGTAGTTGGGGGTCTAGATCACAATTGGATGTCACTGAAGTCATGTGAGCGGTATGACCCAATGAATAACACATGGGAAGTCATCGATTCATTAAAAACACCAAGATGGAGTCTTGGTATTGCTGTTGTACATGGTAAATTATATGCAATTGGAGGCAACCATAATATTGAACAATACGCAGATTCAGTTGAAGTTTATAATCCAGGTGAAGATAAATGGTGTCAAGATATTGCTCGATTGAAGAACGGTAGAAGAAATCCAGGTGTTGCTGTTGTGAATGGGACAATTTATGCAGTTGGTGGACGTGTTGCTAATACCATTGAgtattataataaaaaagcaaatgaatggaacaTCATAGGGTCTGTTCAGACTTGCTGTAATTTTGGATGCGTTGCATTGAGAATAATATAAAGCTTAATTGAATCGCAATAATATAAGTTGTTTAGTGTTAGGGAAATGTAGAAGTAAGATACTGCTAGGGAAAacattattatatattttggtcatatttatttaaaaagtaaactggatttgtttaaaactttaaagatataagcataatattgaaaacatCCTTAAGAAGtgcaatatttattttgattgattcAGGAAGATCAAATTATATTTGTGGCTTTATTAAAAGAACCAAACAGGCATACCCCCTTAATCAGGAAATTGAAAGGACAGaagtttcaaaggaaattgcAAAACTAGACTGTTGATCCAGTGTGCTCTGTATTGAATTCTTGTATCTTTACACAGATTTGTATGTACAATTGGAAATTTGCATATGGAATCTGAATCAATTTGCCTAGCAGAGGAAAATTGCCTtccaattttatctttttatctcTGCTCTGTATTGTCAATACCACTGTGATCAGTTCCCTAAAGTTTTGAATGGTTGTGAGTTTTGACATTGGCGCTGGAGATGATCTGGACTAAATGTTCAGGCTACCTCCCCCATCAATCCCCTTTACATTAATTTATAGTTAATCCATCATTAAAGCCAAGAACCCCTCAAAGGTGTATTTTCAAACCCTTCAGTTTATTGTTATTATCAACAATGTGATTgtgataatttcttttaatgtaAATCAAACACGACTGTTTGTGTAGACAAGACACACTTCAATTAAAGATAATGGCCTTTATTTAAGTCTTCCATAAATAGCTTTATTATCCCTCCTTATTAAAGGAGCACttaatagcaataaaattgCTTGAGTTGGACAGCACATTGTTCTACAACAAAGCAATAGATGTATGTCGTTTTGATTAACTCAGTTTGAATGTGGCTGTTTCAATCAACTtaatcatttcttgcaaacaaACAACCTTTTCAGTATCTACAAgcattcaaaattaatcaaaccGACACATCTAGTAGATGCTTTTATAATTCATGAAATGTGAAGGAATTTTCGTCGTAAGTAGCTCTCAGGGGTTCGCCGGTAAGTCCCACTGAAGTTTTTACCAGGGGTGTAATGGTATCAAAATTACCAAGAGGCTCTTGTGCAAAAAAGGtgaaaaacaatatcaaaattgaaatgagCTATTTGTCAGGGAAGTCATTAATAGGGGGTTCAGCCGCCGTGagccccctagcactacaaCCATGGTCTTCACTTCTACTGGAAGTTTGGAGCTATATCGTTTTTAGATGGAAAAGAAGAACGCAGCAATCTCTATTATGTTGTAGAGTACTCCTTTAAAAAGTCATgctgttaaaatatttttcgagAAATAGCTCTACGTTTTCACGCAATCGCTTCTGCACGTTTCAGTTCGTGGAATGTACGTATCACATGCCATCTACCTCGTCCGGTAGTCCCCTGCTGACTTAGCATCGCATGACCATTTGATTCTGAAATCCTTGTTTAATGTATTTAAATACAGCTTTAAGGTATACATGAGAAAGGCAACACGCAATTTTTAAGAAGACAGTTTAGTTTACCTGAAAGTTTCAATCATACCTCTCAC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002277 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07646 all species →	Kelch_2	Kelch motif	Repeat	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011498 all species →	Repeat	Kelch repeat type 2	Interproscan
IPR017096 all species →	Family	BTB-kelch protein	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24412 all species →	KELCH PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10457	KLHL20, KLEIP; kelch-like protein 20	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.