Gene detail

Detailed information of XP_065060701.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_359:2807881...2825710
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065204629.1

AGAAAAAGCAACTGAAGAGAGAAGCAATGAGAAGAAACTGAAGATGAATGCTGCGATGAATGCCGCTATGAAGACAAGATGATGTTGGAGGACAATGAAATTGACTAAGAGTGGAACAATGGAtagtaataaaatttgagGTCACCGCTGATTGGCAAAAGACAATTGTATGTCAATCAAATTTATCATATGATCAACTGGGATAAAGACGACGCAGTAAATTCTCATGGTTTTCATGTGACAATCAATAAGtaattgataaaattcttacaatttggaaaatttccgATAAAAACAGGAAGAAATGGCATTGAGATTATCTGGATTTGGAAGATTCCCGTCGCGAATCAGCAAAGTTAAATGTTTGAGGCTTCTGAGCTCCCAGCAGCTGCCTCCAAATGAACCTTTCACAAACTTTGAAGACCCAATTGTCAGAGAAAGATTGAACGAGGCATTAGCAAGAGTAAATGGCCAGGTAGAGGACATTCCAATTGTTATTGGAGGTCAGGAATTCAGAACAAATGATGTCAAATACCAAGTATCAcCATATGATCATCAAAAGAAAGTGGCAAAATACCACTATGCAGACAAgGCATTAATAGAAAAAGCTATTGAAAATTCACTGAGTAACAGAGAGAGATGGGAAAAGATGCCTTTTAGTCAAAGAGGACCTATTTTCATGAGGGCAGCAGAATTGATGGCAACAAAGTATAGATATGATATGCTTGCAACAACAATGGTAGGACAGGCAAAGACTCCCATCCAGGCAGATATTGATGCAGTAGCTGAAAGCATTGATTTCTTAAAGTTCAATCACCATTATGCAAGGGATATTTATGAAGGACCTGCTTTGCATCAACCAAAAACAGTTATGAATCATGTTGAATACAGAGGTTTGGAGGGCTTTATTGCTGCAATCAGTCCGTTCAACTTCACAGCCATTGGTGTAAACCTTGCTGGTTCTCCTGCAATGGGCGGCAATGTCGTTCTGTGGAAGCCATCTGATACTGCTATGCTATCTGGCTGGTTGGTGTACAAAATTCTACGAGAAAGTGGCTTGCCTGATGGCATCATCCAATTCGTACCATGTGATGGTCCTCTATTTGGTGACGTCATAACAAACTCTCCCGATCTTGCTGGAATTAGTTTCACTGGAAGTTCAAAGAcgttcaaaaatatttggaaatcCGTCGGTAACggaattgaaaattacaagACCTTCCCTCGTCTCGTTGGAGAGTGTGGTGGCAAGAATCTTCATTTTATCCACGAGAGTGCTGATGTTGATACTGTTGTAAATGGCACAATTTTATCATCTTTTGAGTTCGGAGGGCAAAAATGTTCTGCTTGTTCGAGGCTTTATGTCCCAGACACACTGTGGCCTCAGatAAAAGAAAAGCTGGTTAACATAATGGGCCAGTTGAAACTTGGAAATCCAGAGGAATATTCTACCTACCTATCTGCTGTGATTGATGAGCGGtCGTTCGATAAAATTTCCTCGTACATTGACTACGCCAGGAATTCACCACAGGAAGAGATAGTTGCAGGAGGCAAATGCGATAAAAGTGTTGGGTATTTCGTCGAGCCAACATTAATAGAGACGAAGGACCCAAACAGCAAACTTCTGAACGAGGAAATATTCGGACCAGTATTAACCGCTTTTGTGTATCCAGCAAGTGAATACAAAGAATATATGAAGCTGGCAAGTACTACGTCACCTTATGGCCTCACAGGAtcaatatttgcaaagaataGGAATGTCATTGAGGATGcttgtgaaattttcaagcaaagtgCTGGCAACTTTTACATAAATGACAAGTCAACGGGATCCGTAGTGGGACAGCAGCCTTTCGGAGGAGCCCGCGCATCAGGAACAAATGACAAGGCTGGCATGAACACTTATATGCTCAAATGGTTATCTCCACGATCAATAAAAGAAAGCCTGGTGCATATCAATAACTGGAGATACCCCTGTATGGACTCTTGAATGATGGAAAGTTACGTTAATATTAGAGCTTATGGTTTTATCTGAGTCGAGTATGTGTTTTATTGTGTCTAGCtgaaatagaatttaattttaatctGGAATCTATTTCGGCTACTCAGTGAGCAAAGATagatttatttgcatttaacTTCAAGCTTGAAAAAGctgttattttctatttaaccTAATCGATGTATTACCATAGtcaataaaaaagctttcattGCATAATAACCCAAATCGTTTATAATATCCCCAATCTTACATAATTTCGTAGCCTCGCTCCCAACCCTAAATCGCTAACTACTGGTCTCGCATAGTTCTCTACCGCAAGCCATAATATAGCTTATAATCTAGTATGTGTACTATACTCTACCGAATTTAAGTATATCTTATCGCTTCTAATCCATATCAATATAAATGATACAATTAAAATGTGAGTAGCCATTCCCAGCGTATTTTCCTATCAGATCATAGGTGCCTGTGAGAGCATTATATTTAACAGTTTTAACTTTTGCTTGTAGTTTTTAACCTACTCCTGACACCGTTTTTGTCGTAGATGtgttttgcaatttctgaaaatagaaattgctACAAACGCAAACTGCAAACTGTAAAATTTCGTCGTTTGAATCGCTAAAGTAAGATATAACTTCGGTAATGCTCGTTGACATTCGTGAAATTGAAGCAACGCAAAAATTTCGGTCTAAATCAGCAGTTGTCTAATTCAAACACGTATACGATGACTTAAGATGGAGCTTTGAAAGTAGAATTTTATGTTAGTTGTTAATCAGAGCAGTATTTAGAGGCTTTATTTAGAAGCAAATTAACTTTGCAATACGTAACTGGTATATTAAAGAAACTTTCCTCGCATTAACAAAGTAGAGTAGGAATGAAAACTGCTTGTTATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005931 all species →	Family	Delta-1-pyrroline-5-carboxylate dehydrogenase	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016160 all species →	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR050485 all species →	Family	Proline metabolism enzyme	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42862 all species →	DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003842 all species →	Molecular Function	1-pyrroline-5-carboxylate dehydrogenase activity	Interproscan
GO:0010133 all species →	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00294	E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase	EC:1.2.1.88	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.