Gene detail

Detailed information of XP_065060969.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_10:6088812...6097539
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065204897.1

AATGGTTTTGTCACTAACAAATTATGCTTATTTGGCAAATTTAGCTGTGGGTGTAAATAATGACACCTACAATCCTGGATAGACGATGATGaggtttcatttcatttcacttatttaaaattcaacaacatACAAAAATCCATTAGATAATCCATTAGTCCATTAGATCGATTCAATTAGATAATCCAATACTAAAATCAATTAGATAAACAACATTTAAGTACAACAGGTTACAGATACAACAAAATAGCTAACATAAAAACATTACAATAATACTGGAGATTTGTATGAAGAGGAATTTCTTAAGAAGGGGCTCTCTCAATAGttaaactaatcgaggagagagcaccccctatactaaaatcttattttaccgaaaattttaaacaatgtttggAGGTTGATATatccaaaaaacaaattttggaaaatactTTTAACCCCATTTCGTTCAATGTTTATATATCTGCTACTAAATTACACACAATTTTTCCCGACAAAACTTTTCATCGGCCAAATATTTTGACCGACTTTTTTACCGATAGAGCATGtggtcaaaaataaaacattctgaacataaaatgtttatgtcATGAAGCAAGGCCATTCCCATGATGCATTTGTTATCAACATTTCAGTTGTTTCCCGCCGCCGATCTCGTCTCGATCACAACACAACACATATATACGTAGCTTGGCTTGAGAACGTAGCTAATTACTGTAAGGTAAAAAgtcaataaaataatcaataaattaTGGACGAAGATTTTGCCCTGGCACTAAGTTTGcagcaatttgaaaatgatgatgatatcCAAGAAATTGGGATGATATCAGGAGTGAAGTTGCTGCCCACTGACCAAATAGgcctaaaagaaaatttaggcCATGGTTTAACAACAAGCAAAACGCTCGCTGGACGACCGTTATCCATCGTTGATGAGACTTGGGAGCTCATAGATCCTGTTCCAAATATCCACGAGCTGTTTATACAGTTCAACCAGGcatattttgaaggaaaattagCGGGAGTTGAGGTTCGATGGAGCCCAAGGATGACGCTGTGTGCTGGTTTGTGTTGCTATGAGGGCAGAGGTGGACTGTGCTCCATCAGGCTCAGTGAGCCCCTTTTGAAGTTAAGGCCAAGAAAAGACCTTGTGCAAACATTACTTcaCGAGATGATCCATGCCGTGCTGTTTGTTACCCACAACAACAAGGACCACGATTCCCACGGTCCAGAATTTCACAAACACATGTAcagaataaacaaacaaactggATCTAATATAACCgTGTATCACAATTTTCATGACGAGGTTGGTAATTCTTGTATGGTTTCAACATTATTtggcttgttttcaaaaatatctcTCCATTACAGCCCTAAAAATATCGTTAATATCACTAAACTAAACCAAAATTAATACCATTTCATGCTTTCCTAGTGATGCATTGCTTTTCGAGCTTGGGTCACCGAGAAAACGTTATTAcgttaaaaaaaataacaggcagtaaaataccattaaaaatgcagttttaattttcaactaCGCTTTGATGTTTAGAACAGCATGATGCCAAGTTGCTATTAAACTTTGTGGCATCAACATGCAGAACTagcaataaatttcaaatttgaaaccaactaaatttcaagctataaattttcttctagCATCTTTTAAATTAGTCCCTGATATAGCGTGGTCGACAAAAAGTAAATCACAGGATATTTCCAATCGTCAATCCAGGAGAAATATCACAATTTAACCTATTGTAACAGAATGTAATATTTTTGGACCCCAACACGAATAATGTTACATCAAGACCCAAGACATAGTGCCTTACGTTCGTCTCTCCGACCTTTTTCGTATCAACCATTGCCGACGTAGTTACAAACCTATGTATGTATAATGTATTAAGCTATTTTTTGTTCCGCCTATGATTATACTCGTTTTCATCTCGGAAACAATGCAGTCTctcttttaagaaacttttttgcaggtgaAGAATTATAGACAGCATTGGTGGAAATGTGATGGGCCTTGTCAAAAAAGAGCACCGTTTTTTGGAATTGTTCGCAGAGCAATGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10263 all species →	SprT-like	SprT-like family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044245 all species →	Family	SprT-like domain-containing protein Spartan	Interproscan
IPR006640 all species →	Domain	SprT-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21220 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065060969.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.