Gene detail

Detailed information of XP_065063237.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_448:5722863...5730613
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR052135 all species →	Family	Tumor Necrosis Factor Receptor Superfamily Member 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46875 all species →	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002768 all species →	Biological Process	immune response-regulating cell surface receptor signaling pathway	Interproscan
GO:0003823 all species →	Molecular Function	antigen binding	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0023035 all species →	Biological Process	CD40 signaling pathway	Interproscan
GO:0030890 all species →	Biological Process	positive regulation of B cell proliferation	Interproscan
GO:0032735 all species →	Biological Process	positive regulation of interleukin-12 production	Interproscan
GO:0034341 all species →	Biological Process	response to type II interferon	Interproscan
GO:0035631 all species →	Cellular Component	CD40 receptor complex	Interproscan
GO:0035666 all species →	Biological Process	TRIF-dependent toll-like receptor signaling pathway	Interproscan
GO:0042113 all species →	Biological Process	B cell activation	Interproscan
GO:0042531 all species →	Biological Process	positive regulation of tyrosine phosphorylation of STAT protein	Interproscan
GO:0042832 all species →	Biological Process	defense response to protozoan	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0043536 all species →	Biological Process	positive regulation of blood vessel endothelial cell migration	Interproscan
GO:0045766 all species →	Biological Process	positive regulation of angiogenesis	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0048304 all species →	Biological Process	positive regulation of isotype switching to IgG isotypes	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0051607 all species →	Biological Process	defense response to virus	Interproscan
GO:0071347 all species →	Biological Process	cellular response to interleukin-1	Interproscan
GO:0071356 all species →	Biological Process	cellular response to tumor necrosis factor	Interproscan
GO:2000353 all species →	Biological Process	positive regulation of endothelial cell apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065063237.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.