Gene detail

Detailed information of XP_065063276.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_448:7510083...7512634
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135689838

ATGGAGACCGAACCAAAAATTAGAGAATCTATCACAAGATGCGTGGGTTTGTTAAAGAAGGCACAGACAGACAGTGAAAAATTCGCAGCCCTTCTTGTTGTTGGCGAAATGGACAAAACTCATAAATTAAGCACTGATGAAAGGAAACTTGTTTATTTATCAATTGACTTAAGTTTCATAAAGAAGCTTCTTAATTCTACGAAAGAGCTGCAAGGTTGTGGCAAGATGGCATTGGTTTCCATTGGCCTTACGATTTTGTCATGCACAGTAAATGAAATAGATGATTATTCAAGCAGACACCACGATATTTTCCAAATGGTACCAAAGCTGTTTCAAATCATTACTGATGTATCACAGGAAAAGCAGAAAGATGTATCTGAAGGTGACTTACCTCAAGATAAACAGACAGATAGATCTGACAAGAATCTGCTCGATAAAGAAATGCTTGATCATTGTTTTTCAATACTGAGTTCTTTGGCCTCAAGTAGAAGTGGTTGTGTTTCTATCATAGATAGTGGCTTAGATTTTTTGAAGAATGCAAACTTGAAATTTGAAGATGAAGTTGACATGAAAGTTGGAAAGTTAATTTGGCAAACTTTGGTAGCATTAGACACTGAGCAATTGAATCCATATGCAGAAGCTCTAAATGATTGCATGAGTAGTATTGCTCACAAGTTTTCTTTGTGCCAAGACATCAAAAAATTTGAGCTTTTAGAACTTTATTTTGATCTGTTACTTGTAAGAAAAGAAAAGCTTTTGACCAAAGATGAGCATCTAAAAATACATGCAGAAGATCTAAAGTGTCTGCGTAAAGGCATTATGGAAATAATTCAGTCGAAAACTGTTGTGAAATACAGACATTTGTCATTGAAGCTTGTGTCATTGCTCATTGAACTCTGTGGTCTCACTTGGGCATACACGGTCTATCAAGATGAAAACCAGAAGTATAGTCAGAAGTTTTTGCACCTCGTGGTCTCATTGACAGCATTGGAAATCAACTTGGCTTTCTATGACAACAAGGACAATTTTGAACTTCTGAGTTTTCTTTTTAGTACAATTGAAAACATAATTGTAGCACTGAGTTCAACAGAGGACAAAGTTGTAACAGACCTGCAACATTGCACAATTGGTGCACCTATCCTTCCCAAAATTCTACAAACAATCCATGAGGCTATCTCCATTCTTGTTCAATATTTAGATGAGGTAAGAAACAACTCAAGTGAGAGTGATGCATGTAAAGATATCAAAGTTATTGCCTGCACCAGGCTTTTATGCATATATTTGTCAGAAGAAACCCAGGCAATGAAAAAGGACATAATAAAGATTTCACCATTCTTGATAAAGCTGGCAAAGGCTTCATTTACCAAAGACAGAATAGGTTTGTTAGAGTCCTTAAGAATGAAAACAGAGGATGGAAATGAACAAAAATTTCAATCTATGCCATCCATCTTTTCATTTCTACTGCCTGTGCTATGCCACTGGTCTGCAGAGAAGAAAACAAGGCAAATAATGTTGGAAGAAGAGATGCATAAAACTTTGTGGGAATATCTGTCAGGTTTGCTCTCCAACCATGGTGAAGGAAATGATTCTCAAGAAGTGGTTGAAACATTATTTGGTGTTTTTATGAATATTGCAATCACAGAACCTGGGCTAGCTTCAGATAATGAGAATATTTTTGGAGAAATCCTACAGAAAATTATCCAAGATTTAGAATATGTTTCATCCTCAAAGTCTATGAGCCTTGTGATGAATGCTGTGACACTTGGGCTTATCCTAGCAAGATCACAAAACAAAGACAGGGAAACCAGTGTTGTAGCATTCTTCAAACAATGCTTGTCCAGCTTGTATTTGTGCTGCCCGTATATAAACAGAGAGAAGAACAAAACAAGTAAAGAATGGCCTGAAATTGAAGAATTGTGGTTTATTGGCATGGATAACATGTGTGCCTGTGCTGATAGATCAATTGGGCTTCAAAAAGCTTTTGAAAATGATGCTGCCTTCATGAAATTTTCAGAATTTTTGGAACAGAACATGAACAATAAATCACCTAAGATCAAGGAAATTTGTAATTCTGTGATTAAATTAATAAAAATTGTAATTCATAAAACATAA

Transcript

rna-XM_065207204.1

ctctttttcaaagcGAAGCTTTCTTCAATGGCGGAACGAAGCGTAAAAATCACGTTGTTGTAGATTTGCGCATTATCGAACGTTCCAAGCTCCACGAATGATAAGGTGAagtgattattttttaataatggAGACCGAACCAAAAATTAGAGAATCTATCACAAGATGCGTGGGTTTGTTAAAGAAGGCACAGACAGACAGTGAAAAATTCGCAGCCCTTCTTGTTGTTGGCGAAATGGACAAAACTCATAAATTAAGCACTGATGAAAGGAAACttgtttatttatcaattgACTTAAGTTTCATAAAGAAGCTTCTTAATTCTACGAAAGAGCTGCAAGGTTGTGGCAAGATGGCATTGGTTTCCATTGGCCTTACGATTTTGTCATGCACAGTAAATGAAATAGATGATTATTCAAGCAGACACCACGATATTTTCCAAATGGTACCAAAGCTGTTTCAAATCATTACTGATGTATCACAGGAAAAGCAGAAAGATGTATCTGAAGGTGACTTACCTCAAGATAAACAGACAGATAGATCTGACAAGAATCTGCTCGATAAAGAAATGCTTGatcattgtttttcaatacTGAGTTCTTTGGCCTCAAGTAGAAGTGGTTGTGTTTCTATCATAGATAGTGGCttagattttttgaagaatgcaaacttgaaatttgaagatgaagTTGACATGAAAGTTGGAAAGTTAATTTGGCAAACTTTGGTAGCATTAGACACTGAGCAATTGAATCCATATGCAGAAGCTCTAAATGATTGCATGAGTAGTATTGCTCACAAGTTTTCTTTGTGCCAAgacatcaaaaaatttgagcttttagaactttattttgatctgttacttgtaagaaaagaaaagcttttgaccAAAGATGAGCATCTAAAAATACATGCAGAAGATCTAAAGTGTCTGCGTAAAGGCATTATGGAAATAATTCAGTCGAAAACTGTTGTGAAATACAGACATTTGTCATTGAAGCTTGTGTCATTGCTCATTGAACTCTGTGGTCTCACTTGGGCATACACGGTCTATCAAGATGAAAACCAGAAGTATAGTCAGAAGTTTTTGCACCTCGTGGTCTCATTGACAGCATTGGAAATCAACTTGGCTTTCTATGACAACAAGGACAATTTTGAACTTCtgagttttctttttagtaCAATTGAAAACATAATTGTAGCACTGAGTTCAACAGAGGACAAAGTTGTAACAGACCTGCAACATTGCACAATTGGTGCACCTATCCTTCCCAAAATTCTACAAACAATCCATGAGGCTATCTCCATTCTTGTTCAATATTTAGATGAGGTAAGAAACAACTCAAGTGAGAGTGATGCATGTAAAGATATCAAAGTTATTGCCTGCACCAGGCTTTTATGCATATATTTGTCAGAAGAAACCCAGGCAATGAAAAAGGACATAATAAAGATTTCACCATTCTTGATAAAGCTGGCAAAGGCTTCATTTACCAAAGACAGAATAGGTTTGTTAGAGTCCTTAAGAATGAAAACAGAGGATggaaatgaacaaaaatttcaatctaTGCCATccatcttttcatttctactGCCTGTGCTATGCCACTGGTCTGCAGAGAAGAAAACAAGGCAAATAATGTTGGAAGAAGAGATGCATAAAACTTTGTGGGAATATCTGTCAGGTTTGCTCTCCAACCATGGTGAAGGAAATGATTCTCAAGAAGTGGTTGAAACATTATTTGGtgtttttatgaatattgCAATCACAGAACCTGGGCTAGCTTCAGATAATGAGAATATTTTTGGAGAAATCCTACAGAAAATTATCCAAGATTTAGAATATGTTTCATCCTCAAAGTCTATGAGCCTTGTGATGAATGCTGTGACACTTGGGCTTATCCTAGCAAGATCACAAAACAAAGACAGGGAAACCAGTGTTGTAGCATTCTTCAAACAATGCTTGTCCAGCTTGTATTTGTGCTGCCCGTATATAAACAGAGAGAAGAACAAAACAAGTAAAGAATGGCCTGAAATTGAAGAATTGTGGTTTATTGGCATGGATAACATGTGTGCCTGTGCTGATAGATCAATTGGGcttcaaaaagcttttgaaaatgatgctgccttcatgaaattttcagaatttttggaACAGAACATGAACAATAAATCACCTAAGATCAAGGAAATTTGTAATTCTGTgattaaattaataaaaattgtaattcATAAAACATAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005004 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05536 all species →	Neurochondrin	Neurochondrin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008709 all species →	Family	Neurochondrin	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13109 all species →	NEUROCHONDRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0031175 all species →	Biological Process	neuron projection development	Interproscan
GO:0048168 all species →	Biological Process	regulation of neuronal synaptic plasticity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065063276.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.