Gene detail

Detailed information of XP_065063802.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_45:2383019...2387514
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065207730.1

ATCTGCCACTTAGGAGGAGCTTTTTCGCGGGCAAAATGGCGGAGGATAGTGTTATTGCGGGAGATActtctcttgaaaatggcGCTGCAGTTGTTGACAACAGTAGTAAGAGCCCTCAGTTAactgaaaaacagaaagaaagaatagaaaagaaCAGACAGAAAGCCATTAATTTGAGACAAGCCAGATTAACGGGCATCAAACGAGGTCTTCCGGCTGAGGCTAGCTCTGGGCCTGCCAAGCTCCATCTCAAAAGGGACAAGAGTGTTGGCCTACTTGCTTGTCAGCGTGACACCGGTGCTGGCTTCTTTcttgaagatgatgatgatgatttggCCAATGCAGTGTTACCTGCCCTTGTAGAGGACCTGCCTCCCCCAACACTTGATGAAAGCAAGCATCTAAGATGCGAAGATTGCTGCAAGAAGTTTGATGCCTCATTTCTGTATACAAAATTTGACGTTTCAGTTTGTGATGGCTGCAAATGCGATGAGAAACATGATCTGTGCACAAAAACAGAGGCAAAGAGTAAATACTTACTTAAGGACTGTGATCTTGATTTGAGAACACCTGTACTGAAGTTTGTTTTGAGGAAAAACCCACACAATGATTACTGGGGACAGATGAAACTATATTATAAGGCACAGATTATTGATAGGGCCAAAGAAATTTGGGGttcattggaaaaaattgaagaagaaaaggaaaaaaggcTTGATAATAAAGAACtgacaaagcaaaaaaggtttgagaagaaaattaaagaattgaGGAGAGCAGTGCGAACAAGTACATGGCAGAAGGTTGAACAAACACATGAGCATGAATATGATTCTGATAACGAACAATATGATGAGGAATCTGACGAGTATAGTAAAACTTGTAAATCCTGTGgacatgttttaaaatatgaaaaaatgtaaaattttagcCATGGACCTTAGGGAggtaacaaaaacatttgagaaaTCTGTGATGGGTGCTTTGCTAGTTGAGAAGGATGTTGTGCTAATTGCCATATctttatataagaaaataacCAATTTGTACTTTTTGCTTATATTTGATCATACAAATACTGAAATTGCATAATTATATTGTTTGTTAGTAGAAAACAGGACATTTTTTTACTAGGGTGAAGGGGCGATTGTTCTTCAAACCTAGAATATTTACTACAGCTTCCTTATTCTAAGAACAAATGTTTCAACTTCACATGATATTGTAAGAAAATGCCATGTTAGAAAAACCTCTCTCAGATTCATACCAATAAGGGTGCAAATTCACACCATTGATATCTACAGTGCTAggaaaagttttcataaacCATTCGGAATACCTTTGTAGTGGattgatatttataaaaagctGGGAGTGCTTAGATGTAGGAACCAGGGGGGGCATGCCCCCAGTTAAGGAATGCTGTCTgcaatttctttgttattttggaGAAGAGGCTTGGGGTTCTTTTGCCAAAAACCTAACAAATGGAGAAACTGACAATATTCTATCTACTTTTTGAAgctatattgaaaaattcagatttAGCCGCTCCCACTCCCTACAGAGGTCCCTGGTATACCACCTTGATtactgtaaatcctcgaattgccccccccccctcgaataagcccccactgctaccgtataTTCTCAAATTGGAACCCACAAtctgatgatttttgccatctgaggttaCCTATGACGTTTTATTGAATcaccacaacaaattcatacttttggtagtaattaattaaatgctcataacgaaattcctactaaaataaacaaggtattttaataatgtcttcttattgtctacaataatcttataagcccccccccctcgtataagcccccgttcaaaaatatcaaaaataaataagcccccagggggctaattcgaggataTATGGtatgattttttcatccaaCTTATCAATTTTGCCGATTTAAGAAATCTTATGTATATATATtgtcatattttgataaagacagCATTTGTAATTCTTATTAACTACAGTAAAAAAATCATCTTGTAGTTTTCTGCCAACtgtaaataataaatattaatCTGCTCTGATGCGTAAAAGTGTTTccatttaaaatcaaatgaatcTATTTCACCTCAAATTCACAGATTTTAGTAAAATTTAGCCAGCAGTCCAGCCATTCTTGTTGTATAACCAGTTTCCGTGTTTTGGATCTAAAGTTTAGGGGTGTAAAGCAGACAAAGTACAGcccccaaaaacaaaaaaactgtAACCCCTCAATTTTTAGCCTACAGGGATGAACAGTGGCTCATTTTAAAGGTAAATTAATTGTCTCACAGAAAATAGAATATTCCACAACagttaaagactcattgctaacaatgggccttttCAAGTGTGACGACGGTCCAAACAGTGGCAGTAAACTttacggattaaccaaaattgatttcagactgtctaaaaaagcattgtgggatgcttgcgtagctCTTGAGGCCTtgaagactcattgctaacattTGAGGCCTTatatattattcaaaaattaagactTCTTTCTACCACCGCCAAATCAAACCTTGCCTGGACATTCTGGTTTTATAAAGACAGTGTGGCTATTCTTTCTTCCCAGGGATTTTTTTCCTGAATTGCAACAACTTGCTTTGGCTAGTGACATTCTACAAAACTAGCTTCACATCAacgcaaaaaattattaaaactcACCTAGCTTTTTTAACCTTTGCTAACATAGCTTAACACTAACACAAACAGGATagagaaaaaatgttcatatGTTCAGGCTTAAGGGCcatatatttgtattttttgtatttatttctacctagcatctgaaggtagtttttaggataCTGAGAAGtttatgcttatcgagcagtgtcctggtccttcctctcaatgtgaccacacctcatgaCTCCTGCACCTGGAATTAAAAagagctggcgactcttctcactctgggtgaaagtttggtcatgccagggactcgaaccacagaCACTTGGGTCAGCCCCTCTAACAAATGAGCCATCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05181 all species →	XPA_C	XPA protein C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022656 all species →	Domain	XPA, C-terminal	Interproscan
IPR000465 all species →	Family	XPA/RAD14	Interproscan
IPR037129 all species →	Homologous_superfamily	XPA domain superfamily	Interproscan
IPR009061 all species →	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10142 all species →	DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0000110 all species →	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000715 all species →	Biological Process	nucleotide-excision repair, DNA damage recognition	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0033683 all species →	Biological Process	obsolete nucleotide-excision repair, DNA incision	Interproscan
GO:0070914 all species →	Biological Process	UV-damage excision repair	Interproscan
GO:1901255 all species →	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10847	XPA; DNA-repair protein complementing XP-A cells	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.