Gene detail

Detailed information of XP_065064451.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:2342210...2401447
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135690736

ATGAGACGCTGTGACACTGGGGAGGGTATGTTTGTTTTCAAGACTAAAGATGGTGAAAGAATCCATCAATTGGTGCAAAGCTATGCACACCAACTAGCATTTGATTCCAGTAAATGCTTATCAGCTGATGACAGTGACAATGACAATTGCATTTTTCGTCCGCTTCCTCCAGTTCCAAATATAAGCTCTATATTGCCAGTTTATCGGAGTGAAGATGACGACGACCAAGGAGACTACGACAGTAACGACTATGGTGGGTACTATGAGCCTTCAATACTTGACCAAGTCAATCCAGACGACCTACTAAGCCCTGTTGAGAAGATGAAAAAATACTGCATAAGTGAGAACATCTTCACAAGACAAATGGTGGCCAGAAATGTCGTGGAAACGATGCAAACGGTTACGACAGAAAAAGACTGCCATACTGTTTTACAAATAATTCACCATCTATCTGAAGACATAGAGCCGTCAGTCAGGACAGAACTAGTCGAGCAGCTGCCGTCTGTCTGCATTGTCTTATCTGAGTTACAGCTAAGCATGGATACGGTCCCCAAATATATTTTGCCAATCGTTGTTCGATTTCTCACCGATCAGCATAACCAGGTCCGTAAGTCAAGCCAGGGCTCGCTATTGCAGCTGATGGAACACGACCTGATCACAAGAGATGACGTCGAAGAACAAGTTTGTCCGGTTCTGCTGCAGCTGACTGAGCCGGACAGTGGGGACGATTTCAGAACGGAAGCAGTTACGCTGATGACAAAGATAACAACACTTGTTGGCGCTGACATCACCGAAAGACTGTTCCTTGACCGCTTCGGGGAGCTATGCTCTGATCCTCTTTTTCACATTCGGAAAGAATGCGCATCAAACTTTGGTGATATATCCAATGTTGTTGGGCAAGAGGTGACGGAACGTGCATTGCTAAAGCTCTTCAGTCGGCTTTGCCAAGACGGAGTTTGGGGAGTGAGAAAGTCTTGCGCTGAAACTTTCATGGTGGTGTCAGAGTCCTGCTCCACAGAAACAAGATATGAAAAGCTGGCCCCATTGTTTGTAAATCTTCTCTGCGATATGTCTAGATGGGTGCAAATGGCAGCATACCAAGCCTTAGGCCAGTTCATTTCAACATTTGCTGACCCCGACATCGCTGGGTTTCGAATCACTGAGCATGGACTTGAACCATGTCCCAAAAAAATCAAGAGATCGAAAGAAACAATCGATCATCAATTCGAATCTGCAGAGACTAGGAACCAGTCAAGCCCTGTAGAAGAGATAACTCAAGAAAGATCTACGACAGAAGAATCTTCAGAGCCAACTGAAAAGATAGATGATGAATCGCCTATAGATTCGCAGGCGTCCGAGGATCTTTCGGGGAATCCATCTTTAAATTCGAAATCTGCTGAGGATCGCCTTGCCTCTGACAGTAATCAAGAAAGCGAACTGTACAATTCATTTCTTTATTGGAAAAGCCCAGTAGCCGAGATTGTGTTCGATTCTGAATTCTTGTCATTGGATGAAACAAATTCTTCTAAAGCACACGAGATTAAACCATCTTTACCCGAACTAAGGGTTACTGACGCAGACAAGCCAACTGGTGTTGTTAATTTGTCAAAGCAACTTAGCGAGACGATGTCCGATTTTGATATTGAGGAGGAGGTAAGCCTGAACAGCTCAGAGACGCTTCATGAGAGCGCGATGCAAGATCACCAAAGACTTTGTTCACAGACTGTGATTCCGCCACCCCTTCTCGAGCATTACATCTCAATGACGGAACCCACTAAAGCTCAGACCATCGATACGGAACTTGCTCGTCATTGTGCTTTTACGTTCCCTGGAGCTGTGCTCGCTCTGGGAAAGGAAAACTGGCAGTGCCTGAAGGATACCTACGAACTTCTTGCCTCCGATATGCAATGGAAAGTTCGTCGAACATTGGCCTTTTCGATCCATGACTTGGCCCTTGTGCTTGGAGAAGAAATAACAGTCACAGACTTAATACCGATTTTCAATGGATTCTTAAAAGACCTTGACGAAGTAAGGATTGGTGTTTTAAAGCATCTATACGACTTCATAAAGCTCCTTCCAGGTGACCTGCAGAAGGATTATCTTCCCAACTTCGCTGATTTTCTCAATCCAGATAACAATCGAAATTGGAGATTCCGGCAAGAACTGGCGGAGCAACTCATCATGCTTAGCCAGCTATACGAACCTCGTGAAGTAATCGAATCGATATTCCCAATCGCGATTGCTCTGTGTGGAGACAAAGTCGCCGATGTTCGATCCTCAGCATCCCGCCTTCTAGCAACGATCTTGAAGCAAATTCGAAGTTCAGAGGAAGCCGACCAAGCTCACGTGAAGGCTTTTGTTAATGACGTCATCAAGATGGGGAACCGAAAACAGTCGTGGGTGAAACGAAAAGTGTGTGCCCAGATTTGTCAAGTTCTTCTGAACGAGAGCGCGGAGGACCCGGGGCTATTTGCCACAGACTTTCTTCCAAGTACAATAGAGCTGGCTAAAGACGTTGTGCCTAATGTTCGCATAGTCGCTGCCAAAACACTGAGCAAGTTCACCGAAACAGGTCTGCAAGAATTCTTCCGTGTAAAGACTGAAGATGATGAACTGTACGAAGTGGTAATGAAAGCACTTGAGACACTTCGTGGAGATGATGACCAGGATGTTCGCTATTTTGCGGGTGCAAAGTCGTTTGAAGAAGTCAGTTTATTCAGCGATGACGCAATGAAGAATGATGGTCAGTCCTCGGAAGAGTATGGCGACGATAGCCGGCAAGAAGGAGCTGAGAGTGAAGAAAAATGCGCCCTTGTCGGAAATACGTCAGAGGATCCTTTGTTAACGGCATTCAGCTATAAAGACGATTGCCCGAACGACGAAGATGAACCTGATATCGACTCGTGCAATATTAGCGACGAAAAACTCGAGAATGATTCAGAATATGTTCCAGAGGAGTCACAAACCACGCCTCACGTACAAGATGAAATCTCGAGCAACGAGGGCTCTTCAGAAGTAATTGTAGAAGAGGTTCTAGAGAACCTTATCGAGACGATAAAAATCAATTAA

Transcript

rna-XM_065208379.1

CTGGTCTGTGCTTTAGTCTCTCGCAAACTAACTATAGCCAATCAGTGAATGACCTTGAGCTCCCGCGATTGTAAAGCAACCAATCGGCTTCTGATATCGCGGGTGCTCACTTTTGGCGGGAGCACCCCCTATTGTCAAACGtagttcaaattttcatttaggcaGGCGGAAGAAGCATGTTGTAGTTGTTGTGTAGAAATGGCGATCGCCAGTCACAACAGAAGTGAAGcgatttcttttgaaattttaatagaaCAAACGCGTGTGTAATGAGACGCTGTGACACTGGGGAGGgtatgtttgttttcaagactAAAGATGGTGAAAGAATCCATCAATTGGTGCAAAGCTATGCACACCAACTAGCATTTGATTCCAGTAAATGCTTATCAGCTGATGACAGTGACAATGACAATTGCATTTTTCGTCCGCTTCCTCCAGTTCCAAATATAAGCTCTATATTGCCAGTTTATCGGAGTGAAGATGACGACGACCAAGGAGACTACGACAGTAACGACTATGGTGGGTACTATGAGCCTTCAATACTTGACCAAGTCAATCCAGACGACCTACTAAGCCCTGTTgagaagatgaaaaaatactGCATAAGTGAGAACATCTTCACAAGACAAATGGTGGCCAGAAATGTCGTGGAAACGATGCAAACGGTTACGACAGAAAAAGACTGCCATACTGTTTTACAAATAATTCACCATCTATCTGAAGACATAGAGCCGTCAGTCAGGACAGAACTAGTCGAGCAGCTGCCGTCTGTCTGCATTGTCTTATCTGAGTTACAGCTAAGCATGGATACGGTCCccaaatatattttgccaATCGTTGTTCGATTTCTCACCGATCAGCATAACCAGgtCCGTAAGTCAAGCCAGGGCTCGCTATTGCAGCTGATGGAACACGACCTGATCACAAGAGATGACGTCGAAGAACAAGTTTGTCCGGTTCTGCTGCAGCTGACTGAGCCGGACAGTGGGGACGATTTCAGAACGGAAGCAGTTACGctGATGACAAAGATAACAACACTTGTTGGCGCTGACATCACCGAAAGACTGTTCCTTGACCGCTTCGGGGAGCTATGCTCTGATCCTCTTTTTCACATTCGGAAAGAATGCGCATCAAACTTTGGTGATATATCCAATGTTGTTGGGCAAGAGGTGACGGAACGTGCATTGCTAAAGCTCTTCAGTCGGCTTTGCCAAGACGGAGTTTGGGGAGTGAGAAAGTCTTGCGCTGAAACTTTCATGGTGGTGTCAGAGTCCTGCTCCACAGAAACAAGATATGAAAAGCTGGCCCCATTGTTTGTAAATCTTCTCTGCGATATGTCTAGATGGGTGCAAATGGCAGCATACCAAGCCTTAGGCCAGTTCATTTCAACATTTGCTGACCCCGACATCGCTGGGTTTCGAATCACTGAGCATGGACTTGAACCATGTCCCAAAAAAATCAAGAGATCGAAAGAAACAATCGATCATCAATTCGAATCTGCAGAGACTAGGAACCAGTCAAGCCCTGTAGAAGAGATAACTCAAGAAAGATCTACGACAGAAGAATCTTCAGAGCCAACTGAAAAGATAGATGATGAATCGCCTATAGATTCGCAGGCGTCCGAGGATCTTTCGGGGAATCCATCTTTAAATTCGAAATCTGCTGAGGATCGCCTTGCCTCTGACAGTAATCAAGAAAGCGAACTGTacaattcatttctttattggAAAAGCCCAGTAGCCGAGATTGTGTTCGATTCTGAATTCTTGTCATTGGATGAAACAAATTCTTCTAAAGCACACGAGATTAAACCATCTTTACCCGAACTAAGGGTTACTGACGCAGACAAGCCAACTGGTGTTGTTAATTTGTCAAAGCAACTTAGCGAGACGATGTCCGATTTTGATATTGAGGAGGAGGTAAGCCTGAACAGCTCAGAGACGCTTCATGAGAGCGCGATGCAAGATCACCAAAGACTTTGTTCACAGACTGTGATTCCGCCACCCCTTCTCGAGCATTACATCTCAATGACGGAACCCACTAAAGCTCAGACCATCGATACGGAACTTGCTCGTCATTGTGCTTTTACGTTCCCTGGAGCTGTGCTCGCTCTGGGAAAGGAAAACTGGCAGTGCCTGAAGGATACCTACGAACTTCTTGCCTCCGATATGCAAtgGAAAGTTCGTCGAACATTGGCCTTTTCGATCCATGACTTGGCCCTTGTGCTTGGAGAAGAAATAACAGTCACAGACTTAATACCGATTTTCAATGGATTCTTAAAAGACCTTGACGAAGTAAGGATTGGTGTTTTAAAGCATCTATACGACTTCATAAAGCTCCTTCCAGGTGACCTGCAGAAGGATTATCTTCCCAACTTCGCTGATTTTCTCAATCCAGATAACAATCGAAATTGGAGATTCCGGCAAGAACTGGCGGAGCAACTCATCATGCTTAGCCAGCTATACGAACCTCGTGAAGTAATCGAATCGATATTCCCAATCGCGATTGCTCTGTGTGGAGACAAAGTCGCCGATGTTCGATCCTCAGCATCCCGCCTTctAGCAACGATCTTGAAGCAAATTCGAAGTTCAGAGGAAGCCGACCAAGCTCACGTGAAGGCTTTtgttaatgacgtcatcaagaTGGGGAACCGAAAACAGTCGTGGGTGAAACGAAAAGTGTGTGCCCAGATTTGTCAAGTTCTTCTGAACGAGAGCGCGGAGGACCCGGGGCTATTTGCCACAGACTTTCTTCCAAGTACAATAGAGCTGGCTAAAGACGTTGTGCCTAATGTTCGCATAGTCGCTGCCAAAACACTGAGCAAGTTCACCGAAACAGGTCTGCAAGAATTCTTCCGTGTAAAGACTGAAGATGATGAACTGTACGAAGTGGTAATGAAAGCACTTGAGACACTTCGTGGAGATGATGACCAGGATGTTCGCTATTTTGCGGGTGCAAAGTCGTTTGAAGAAGTCAGTTTATTCAGCGATGACGCAATGAAGAATGATGGTCAGTCCTCGGAAGAGTATGGCGACGATAGCCGGCAAGAAGGAGCTGAGAGTGAAGAAAAATGCGCCCTTGTCGGAAATACGTCAGAGGATCCTTTGTTAACGGCATTCAGCTATAAAGACGATTGCCCGAACGACGAAGATGAACCTGATATCGACTCGTGCAATATTAGCGACGAAAAACTCGAGAATGATTCAGAATATGTTCCAGAGGAGTCACAAACCACGCCTCACGTACAAGATGAAATCTCGAGCAACGAGGGCTCTTCAGAAGTAATTGTAGAAGAGGTTCTAGAGAACCTTATCGAGAcgataaaaatcaattaatgAATGGCGGATTTATCGAAATGGCTAGGCCAATCAGGTGTGATGTTCACCCGCCCCTGGATGTGTTGATTCCTGCGAATTAAAGTTCAAGTGAAAACTTTATCCAACCGAATACAAGATATTATCTCAATTATTGCTGTCGTGAAATTCGGGTCACTGAACGTCAGAACTTAAGTTTTTCGTCTACTCTTATGGATCAATCAGAGTTCGAAGTAGAACTTCCGTGAGGCATTACTTGCCAATGTACATACAAATGGTTTATGGCTGAAAATTGGCCACAAACTGAACTTCTGACATGCTCAGTTCGACGCAGAATGGAATGTCTGATTCAGTGATATTTTAGTATGACGTCACTTTTGTACCCAGGTTTCCTGTCTCTTTATGAAGTATATGCCTAAAATCATATCAACATAGAAATAACTTTAATTGAACCTTAGGTGGTGTACAATCTCTTTTGCCCTTGTAAATCAACGTCATTTGATACCTTTCAGAGTTTACGCGAAATTCATGCCTTTAGTAATGAAGTTCTATTCAGAAAAGacttgtttttttatgaaacGTCGCCAATAGCTTTCAGTGTGACCAACTAACGATGGTCTTTCATTAGCGAACTTAAAGTTGCAGCTACACCTCTTTAATAAGACTTACAGTTTGTTTATGAAATACAGTTTTCTGCACTATTTGACTGCTTTAaccatttttttgttaaactgGCGCAATCAAGATTTTGAGACATTTGTCAAACCTGTGTGAGAAATACATGTCACCTGCTCTGTGTTGCGAAGTATTTGCCTTCTTCCACTCCCGGTATTTTGTGATGCATTGGGCCTAGAGAGGTCAGATTGAATCGGAGCTGCAACTCCCGCGTCTTTAAAACCTTATAAAGCTTTCAAATCTTGTGCCACTGTTTGTTAAAGATTTATACTCAAAAAGGGGCATATTACCTACtgatgtattttattttttaccttCACCAAGTACGTTCCCTCTCGACAGCATCTGATTGCAAAaacgatttttgaaaaacatttaagaaattccGATTTACCTGTATATTTTATAGACcaagaaaatgcattttcgTAAAATAGGAACTGAATCGCGTGTTAATTGACtattttgaaacgaaaagatGTTATGAATGCTCAGTTGAAAGTATTTATGTTGTCTCTCTTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02174 all species →	IRS	PTB domain (IRS-1 type)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR051023 all species →	Family	Protein Phosphatase 2A Regulatory Subunit A	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR002404 all species →	Domain	IRS-type PTB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10648 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15424	PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.