Gene detail

Detailed information of XP_065064607.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:10036439...10044182
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09749 all species →	HVSL	Uncharacterised conserved protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027521 all species →	Family	U6 snRNA phosphodiesterase 1	Interproscan
IPR009097 all species →	Homologous_superfamily	Cyclic phosphodiesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13522 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0034477 all species →	Biological Process	U6 snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23093	USB1; U6 snRNA phosphodiesterase	EC:3.1.4.-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.