Gene detail

Detailed information of XP_065064674.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:2929881...2948146
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065208602.1

CTCGTGGCCACAAGACAAAACAACTTGCATTATTGTGTCTAGTCTGTGGTCGCTGGAAGTATGGCTGCAGCAGCATGCTCGCGGGACAAGGACTCGATTGCCTGGTtgtcaaagaaagaagatgAGGGCACACAAGAAGaaaaagtgGATGGACAAAGAATAACATCTGTATCTGGTTGCTGCAATAAACTGACAAGGAGGCTTTTACCTCCTCATATCAGAACAGAATCAAAGGCCTTGTTAAAACTGGCATGGGGAATATCTCTGAATTcatttcttacatttttcatacCTGTCTCTTCAGTGCTTATTGTTGGGCACAAGGGAAATGTTTACCTTGCTGCACTAGGACTTGGCTTGTCAGTATGTAATGTGACAGGAAATGTCTTTGTGGCTGGACTGACATCAGTGACAGAAACATTGTGCTCCCAAGCATATGGTGCTGGACAATACAAGCGATTTGGAGTTGTGATACAAAGATCCCTGATCCTTACATTCTTAGCAGTTCTTCCATCATGTGCCCTGTGGATAAATTTAGACAAGATACTTGTGCTCCTAGGACAAGACAAAGAAGTTGCTTTACTTGCTAGTTACTATGGGATTTGCTTCATTCCTGGTTTACTGtGTCTCATACTGTTCAATACACTGACAAGGTTTTTGGCTTGCCAGAACATTGTTTACCCAACTGTGATTGGCTCACTTCTTGCTTTTGTTATCAATGGAGTCTTTTGTTACGTCTTTGTCtatgaatttgattttggaataTGGGGTGCCGCGCTTGCTTTGgatttgtcatatttttctttttgtgtctTCAATCTCGTCTTTATTTacgtgaaaaaaattcacGAAAAAACCTGGTATGGTTGGTCAAGAGAGTGCTTATCTCAATGGACggattttttttctcttgctATTCCAGCAACCAGCATGACGTTAATGGAATGGATTGTTTACGAACTGGCCATCATTTTAATGGGTATTATTGGAAACGTGGAGCAAGCAGCTATGGTTGTGTCATTATACATCGCCGGATCTATATATTTTGTATCTTTTGGTATCGCAATTGGCATCGCTGTCAGAGTTGGTAGCTTTCTAGGAGCAGGGCTTCCTCAATATGCGAAGCATTCTGTGAAAGCTGGTTTTTTAGTGTCAGCGGCATTTACAGTGTCAATTGTTTTGATAGTCGCTGCAACCAAAGATGTTATTGGCTATTTATTTACAAGTGATCGAGCTGTGATAGAGATGGTATCAGACGTTATCGTTTTAGCAGCATcacatcaaatttttgatggaTTGCAGACGATATGTATCGGAGCAATTCGTGGTATTGGATATCAAAAGTACGGCgcattgataaattttgtagGCTACATGTGTGTTGGAATACCCTTGTATATTCTGTTGATGTTCAAGGCAAACATTGGAGTGCTTGgATTTTGGTTAGGAGCAGTGGCCGGAGTGTGGTCCCAAttgtttGGAGAAATCGTTTTACTGTATAGAGCTGACTGGACCGAGCTTTCGAAATTGGCAAGAGAAAGAGCTGGTGTTGTTACAGATGCGCACCCTTTTGAAAGTAATGGGCCTACTGTGGAGAACTACTGTGCAATTGAAAAGAAcgttgaagaaaacaaatacaaaagcaGAAGCAAAGTCAATGACGTAACTGAAACTGCCTTCATTAAGGAGGAGAATTCTAGTCTTTTCACGCCAGaCTTTCCAAGTACTGCCAAAGGTGATCACGGAATTTCTTCGCCGAATGTAAACGCGGCTGAGGTATTTTTTACGTATCCACCAACAGCAACTCATTCAAAATTAGagatttttctcaaggttttAGTTGTTTCTCTCTTATTCATTTTAGTAATTGTTTCGTTGGTCTTCAAAGTGACTCAtccttaaatatttttatatcttttttataattatttttatcgcTGTATAGGAGAATATTCGTTAAGATTGTtataaaagattaataatTGATATCGTctataaaatatgatataactAAGCACTAATTAATATAAACTTACTCAATAGTTTATTAGATTATTAGAAATACTTTATAGAATATTAGAGATTTTATATGATATTAAACTGTGAAGATTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01554 all species →	MatE	MatE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045069 all species →	Family	Multidrug and toxic compound extrusion family, eukaryotic	Interproscan
IPR002528 all species →	Family	Multi antimicrobial extrusion protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11206 all species →	MULTIDRUG RESISTANCE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042910 all species →	Molecular Function	xenobiotic transmembrane transporter activity	Interproscan
GO:1990961 all species →	Biological Process	xenobiotic detoxification by transmembrane export across the plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03327	SLC47A, MATE, DTX; MATE family, multidrug and toxin extrusion protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.