Gene detail

Detailed information of XP_065064877.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:4386739...4417916
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065208805.1

CGGTAAGTCAATGTTGTTGTAAGGTACCTAAAAGCGAAGTTTAGAAGGAGTCTGCATTGCAGTCATCAAATGGAAGGTTAAACTTGGAAAACAATCTATATTTAATTCTTTATTGCTATGAGTAAATTATCAAAGAGTGTGCATAAGTCTACTTTGGTTTATCTATAATCATTTAGAGCAATTTTACAGCATGGAAGtcgagaaaaagaattttatggATACAAAGAAGAAGGACATCCCATCTGAAAAGTCATGTCGGCCGCTTCGCAAGATTTTAACATCTGGACCTAAATTTCCATTCCTCCACGAAGGGGAAATTTCTGTGTGTCGACTAAATCATCAAAGGACACTTTTAAGCAAACTTTTAGGCTCGAAGCTGCTACGAAGATGGGAAACACACAGGATTGTACTGTCAGATAGCCAAATTTACTCAACGACGCCAACTGGTTGCATGGAATTTGGAGTATCGTACAATGAAATACAAGATGTTCATAGTCTTCCGAGATGGGACACAGGCCAAAGATTTGTCATTCAGATCACAATTCCGGACGGCCTGCTTTTACTGCAAGCAAATAACACATACCTTCGTGACCAATGGATGCATTCGTTGGTTTGGAGGGTTAATGCGAATAGATATcgaaatttatttgcaaagctCCGAAATCCGGAAGAACTTGTTAAAGAGCTGAAGGAGCTGATTCAGTTGTCCTTGGTAACGCAGCTACACGATGACATCGTTTTTCAACTACCGTTGAACACAGTATCAAACTTGTTACTTCATCATGGATACAGGATGGCAGATGCTGTAAAGGAGGCCTTACTGCGGgCAACTGAGCCTCTGTTAGAAATTCATAACCCAACGCCGGCCATCTGCAAATGTTTCCAAAAGATATGCAAAAACCGGCCTCACAGATCGGATATTTTCAACGTCTTTGTACCTTCTGtgcaaagaattttgaagCACAACACGGACTTTGGCAAAATGCCTTACTTGCGTTCTTTGGTGCAAGATTTCATTTACGCTATATACTTTAAAGATGAAACTCACGAGGAATTATCCAATTTCATAGCAAGTGTCCATACCTCCAGTGCCAGCTGCCCGCATCCACGAGTCCTTCCTAATCTCGTTGCAGTTTCATTGGCAGCTTTCTACACGATCCACGATGAGAAAGTGGAAATGAAAGTAGAAAAGAAGTCAAAACTGCTTTTGTGCTTTCAGAAGCTGCTTATAGAGCTGGCAAAGTATCCTGATTGGCTTCCTGGTTTATCTACTTTACTTCAAGCCGTGCCATTTCCGAAGAAGTgtcttgaaaatgaagaattctCTGCAGTTTTGGCGGAGGTCCTAAAGATATTTGCTCGAGACTCCAGATGTGAGGtccatcaaaatattttaccaataCGCGAAGGAAAGCAAGGTTGGATTCACCATTTTGCGCCAGATGGTATCTGTTGCCACGACGATGCTGCTGTTTTTGCTGATATCGCTCTGACCTTATTATTGGATTTTGACCTGGTCGAGGACGAAGATGAGAAACAGCAGATTATTACTGCCTTGCAGACCACTGAATGTGGACTGCGAAGCTACGAAGAGCTGTGCTCTAAAAAGACGAAATTTAGAGAAATGCGAAAACAAGATGGCCCAACACATCTTACGCTGCCTACTAAATCAACGGACCAAGATCTGGCGGCTGTTTTGAGATCTGGCTCATTTGGTAACTTAGAAAGCCTGAACCTCGCTTTCACAAGAGTCACTGGCGCATGCGCAGAGTATCTAATACAGTTGCCTGCTTTAATTCACCTCAATCTCTGGTGCACACAGTTTGATGATCGTGGACTTCAGTTGCTGACAGAACATGTCAACACATTGCAAAGTTTGAACCTTAGTGAAACACCAGTTACTGACGAAGGACTTCAATCCCTGTGCATGCttccaaatttgaaatttcttaacttAAACAGCACCAAGCTCTCTGCACTTGCTTATGAAGGAATTAAGaataaactGCAGACATTGGAAGATGTAGACATCCGGTACACCGAAGCATGGTGATATTAAAAACACTGAGTGCTTTTTCTACGTCACAATTGAGCCTTATGATGAACAGGTCTGCGAATAATGTTGGTGCGTGTAACCTGGCTAAACTGTGCTGCTCAAATTGTGTTAATATACAAAGAAACAGTAGCATTTACATTAATGAAGTATTGATGCCTTTGATGTGAATAACAGCAGACAAATAGATGACGTTTTGGAGCCGGTATTTGCTCGATTGTGAGTCAAGCTATGACAGCAATAGAATTCCTGCTCGAACTGTCAATTTTACTCGTAATATTTTACtgtgattttcttttaagtttAATTCTAAAGTAAATTATCAATTTCGTGCTCAAAGCCATTCAAAATGTGCAAGAAGTTGAAATCTTCAATTTAAGAAACCAGTCAAGAAATTAAGGGCGTGGCTTTCAATGTCGATGTTTTTTGCCAACAGTACAGGTATATTTTATTGAGATGCTTTGCTACTAGAAAACGATCTATATTTCCTTCGGACAAACCCAAAAGATATGGATACCTTCCtcgcaaaaaattgaaataaaaggcTTGGATGGGGCACTTAggttttcttctgtttttcaCTGGCCTACCTCTCAATGTCGTGACCGTGTGACTGCCGTGTTTACAATGCTCTGAATCACACATGCTGACGAAATAAACTCATTACACTTCAGTTTAACCCCCGTTGATTCTTTTTGCATATAAAGAAATGTATGCATTTCAAGAGCAAAGCTGTGCTGCGCTGGGTCGTTTTCATCAGTTTTGCGATAATGGTTTTGTTCtctaaatcaaaatcataCTGCCGAGTGGCTGATCCGGTTGCGGCCATTTTcattcatataatttttaggTCAAGGCAACCCCAAAATTGAAATCACAGCCGTGAAAGGCAACTGGTGCATAAATTTGATGACCATAACTTGCAATAAAGAACAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR052813 all species →	Family	C-Maf-inducing protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25480 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26126	SLF1; SMC5-SMC6 complex localization factor protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.