Gene detail

Detailed information of XP_065064913.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:7123988...7133563
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065208841.1

CACCCAGAGGCCGAAATATCTTTTCGTCAGTATTACATTATAAATTgatcatcaacaaaaatgttatggatttgatcattttatgaGCACTCACAGTGGAACTCCAGTCTACATATATAGACAGTATCTTAAGCAAAgacaaaatttacatttttttgggACATCTTCTTGAAAGGACTTCATAATCAGAGTTGCTGGTGGtgtactttgttttgataatcGTTTTAAACGGCCTAGCCCGGCCCATCACCAGACCAGCAGTTTAACTTTATTGATGGCTGCTGATAGCATCAATTTAGTTTTTGCATGCTGCAAAGGGTGAAATGGAAAAgtcaaaatattgcaaatgtttACACAATCAGTATTAGCTCCAACTTTCGattaaaatgaatgcaaaGAAACAGGGTGGCAAAGGCCCAATCAAGAAACTACACAGAGTGCCTGGCAGTAGGCTAAGAAAGCAAAGCTCTGCATCTAAAGTTTACCCTCGACACGCTGTTGATCATGaagaCAATGCATGGTTGAAGACtaaagtaagaaaaataaacgaaGCTCTTGACAGAGACCCTGTAGATGTTGATTGCTTGCGTAAACTTGCACTGTCTGAATATGGTTTTGTTACTGATGACATCAGATGCAGAGTTTGGCCAAAGCTTCTTAATGTGAACATCTTTAATCTGCCAAAAAGAAGCAGAGCTGATATAGAACAAAAGGagtttagaaaaaacaaatattttcaacaagtGAAACTTGATATTGACAGATCTCAAAGGAGGTTTCCTTCAGGAACAAGGGCATCAAGAAGGCGAGTCTTGCAAGACCAGTTAACCAACATTATAATGAGAACATTATGCAGAAACCCGGAACTTCATTACTATCAGGGCTATCACGATGTCGCAGTCACATTGTTAAGAGTTGTTGGCGAAGATCTTGCAATGGCTCTTCTTGAACAGCTGTCTTTGCACCATATAAGAGACTTTATGGATGTTAATATGGAAAGGACAAATAAAATGTTGGCCTTGATTCATCCGATTTTATCAAAGATGGATATAAGCCTGGCAGCCTTTATTCAAAGCGCAGAAGTTGGCCAAATATTCGCCCTTAGTTGGTTGATCACATGGTTTGGACACAATCTCGAGAGATTTAGCGTCATAGTTCGTCTGTTTGACGTCTTCATCGCAACAAACCCATTTATGCCAATATATGTTGGGGCAGCGATCATCGAATCAGATGTAGAAAATGTGATGGAACTTGACTGCGAAATGAGTACTGTTCACTCGTATTTGAGTAAGCTTCCAAATGGCTTAATCCTCGAGGAAACAGAATACATTATTTCAAAGGCATATCGCACCTACTTACAGTATCCACCAAACATTCTACAGAGAACAGCGAAGTACATTGTTAGTCAAAGttcCTCTGCATCCAGTCACAAACAACTTGTCGAGAGATCAATGATGCAAAAACCTGATACATTGTTGCGAAAGCGAACCAGATTAAGAAACTTTATCAGCGATGAACCAAAGCAAAGTGCTGGTTTTGAAGAGGTTCTTGAAAAAGATGGTAAAGGTAACCAGATAGTTAAACTAGCAGTTTGGACGTTAAGTATTTCAATTGGAGCAATGacatttttggttttgaatgCTGCAAAAAAGTGGATATGAAGTCATTTCGtataaagaaaaagtctaTTTTAATCTGTCTCTTGCACAATGTACTTTTCAACATGGTACAATTGAATGTGTTTTGCAGATCTTTGAAAATCTATGAACATCAGTTTATTTATgttctttaaaattgattgatttttgaaaatgacattgGTAAGGCAATTCATTTACGTTCTAAATGTTACATTATTGCTATCGATTTCGTAAGTCGTTAGTTTAATTTCCGAGTATTCGACTATTCACGATTACGTTTAAAAAACAATCTGATTACGCCTGATTTTATCAGTCTAATTCTTCTGTATctaagaataaaattttcagctcTTGCATAAGTAATTCCTTTGCATAATTTAAGTGCGAAATGAGCatttatgaacaaaaaataacagatgaGTATGAAATTCAGCAGACGAATAAGGAAAtttgtttgctgttgttggaagaaaattgcccaaattcaaattaataaTGAACCACTGTTGCAGTAAAGTGAAGCTCCTGGTAGAAGAAAACCAGTAGAACTGTTTCACTGATTACATAAAAGAActaaaacagcaaattttttggtcaaaagcagaaaaaagcCACATTTCAAACAgcatttaattatttttgcatttatttttctgttgtaCCTATATCGGCGTTTTATGATCTGATTCCCTGCAGTTCTAGTGGTTTTATGACTTACCTTAAATTGTTGCTTGCTCTgttaattgtaaattttatttaatgaCATCTCCGTCGAAAATGCCTGTTTGGTTATTATCATTGCTTTTTTACTTCAATGaatcatgttttgttttattgtttcttaagCTTATTAGAAGTAAGGACCAGTTTGATAAGtgtttaaatatatattcagAATTTTCGCAGTGAAAATTAAGAGAATATAGTTTTTTTATGGAATTCATCATTTCTTCTATCGTTGGTAATTCTTTTCCAGTCACCCAGTAATTGTCCTTCCCTGTGCTTTCACAGTAAATGTCCAAATTCTTGCATGCCCATAGTATACAGCTGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR045913 all species →	Family	GTPase-activating protein TBC20/Gyp8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20913 all species →	TBC1 DOMAIN FAMILY MEMBER 20/GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20372	TBC1D20, GYP8; TBC1 domain family member 20	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.