Gene detail

Detailed information of XP_065064965.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_4:1302506...1329031
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135691126

ATGGAGCAAAGCAAAGGAGAGCAAACTTTACTTAGTGAAGTTCAAAAGGCAATTCCCCAAAGATCAGGAAATGTCACATTTTTTAAGAAAGTTGGTCTTGAAAAAGGAGGCAGTAGATTTTTGGTAATATCTACAAACAGGGTTTTTATACTCTCTACAAAGACACCATTCAAGGCTGAAACAAGCTTTCATTTGCTTGAAATCAAATCAGTGGAAAGTTCAAAACCATGCATGCTGCAGTTCAAGGTGGTCCATGAAAAACCGGTGTCAGTTGCTATAGCAACAGAAAGTGAAGATGATATCCAGTTTATTGTCGCTCAGATTATTGCATTGCTGCGTCACAACTTTCCTGGCTCAAGCATAGGCAATGAATTGAAGTTAAAAATCGAGCCTTCAGAGAAACTTGAAAATATCACAAAACTTGCTGTTGCACTTGCTAGTCCGGCATCTGATACTGATATGGGACCATGTGGTGGATTTTCGTTATCATACTCGTCGATTTGCGATCTGCATGGAGCAAAACCGATGGCTGAGGTCATTTGGGATGTGGATAAAATCTACGGAAGTCATGGATGTAAAAACTTCAACATATCTGATTTCGACCATTTAGAAGTAAAGGAACTGATTCCTATTCTCGAAACTTTCGAATACAACAACTGGTTTCAAGGCCTTTCCTGTCGATCCTACAAATTAAGCAACGAGCTGGTAGATGGTTTGGCCAAAGTCTTCAAATCTAACACTTCGATTGAAGAACTTGACCTTTACGAGTGTCGGCTATCGAAAGAAAATGTGCAGAAATTGTCACAAGCTGTTACATCGAATCCGAAGACAGGGCTTAAAAGAATAAATTTGGGAAAGAATACAATAGATGATAGGGGCGCATCTTCGTTTTGTGCTGTTTTGTCAGCACTACAGCATGGTTTTGAGTCACTTCTCATCAAGGATGTTGGAATAACTGGCAAAGGAGTGTCGTTGATATTCTCAGCCATCAAAGGAAATCACCACATGACATCATCGCTAACATGCCTGAATCTATCCTCCAACCCATTAAAAGCTGATGGCACCTCGGCAGTCTGTGAGTTTCTTGCAAAGGCCAATGTCCTTCAAGAGCTTCATTTGTCCAATTCGGAATGTTCTCTGGAGCTGGTATTCGGAGCATTGGCTAGGGGATGTCTTCAGCATTTGAAGATTGTAAATTTAGCAGGGAATCCTCCTTCGTATAGAAAATCTAAAGATACTCAAATTGCACCCTCTGTTACCACGTTCTTTAGTTCAAGTATGGCCTTGGAATCTGTAAACCTTTCTCGTACGAAGATTTCTGCTGAGTTCACCAAAGCAATTCTAATCGGCTTGATTTCCAACACTGGTCTTACAGATGTTTCCTTAAATCTATCTGGCAATGAGTTACGATCGGCTGGAGCAGCAGAAATAAGTAGCTGCATTGACAGTGTCAAGAATCTTGTTCAGCTGGAACTCGATGATAATGGTTTGGACATGGACCTTATTGCCATCTGCCATAGTGTAAAAAAGAGCACCTCCCTTAAACGCCTTAGTCTGTCACAAAACATCGGAAAATCCAAGAATATCAATGTACCTGAAATTCTGGAAAGCATTGTTGAAATGATCATCATGGAGTCCTTGCCATTGACCTCACTTTCAATCGCTGACAATCGGCTGAGACAAGATGCGTACGTGATAATCGATGCACTAGGCACCAATGGTCTTTTAGAAGAACTTGACATAAGCGGAAATTTTATTGGTGATGAAGGAGCAAGACTTCTAGCCAAAGCATTGCAAATAAACACCAAGTTAAAGAAGATAAGCCTTGATCGAAATGGGATCACTCTTAAAGGATACAGCAGTATTGCCATGTCAATCGAAAGGAATTATACACTGCAGTTAATTCCAACCCCGTTCGGGGACCTACTGCCCCTGACGAAAAATAATGGACAAGCCGTAACTAAATGTTTTACGAAAATCGATGAGCTACTGCTTCGAAATCAGTCGATTGAAGTTGGTGAGAAGGATCCTTCTGTCAAATTAAAGCAAAACCTACTGCTAAGCTCGCTAGATCAAGAGAGCACCGACTATTTATTGGTTAAAGTCCAGGACGCCATTGCTGAGCTGAATGGGTTAGAAAATGACGAAACCATTGCAAAAGAGGTGGAAGCTGGAAAGGAAGCGATTAAAGATGCTGACAAAATGAAGCAGATGTTGTTCAAGCTCTTTGTGGACCTGGGAAACCCTTCGAAAAAGATTGAAGAGAAAGCTGATGAAATGTTAAAAGAAGTCACTGGTTTTGCAAATGACCTAGTCAAGGAGAATGTATCTGGTACGCTTGCACACGTGAAAGAACAATGTTCTTCAATTGCATCTAACGAGGAAACGCTGAAAGAGCTTGAAGCATTGGTTTCATCCGAAGGCAAAGTTGATAGTCTTGGACTGAGAGAGACCATAACACGAACTATGGTGGGCCTTATTTCAAATAAAGTGAATGATGCAACCCTTCGCGTTGCTTCTGCTCTTGGTGAAAGCCTCACAAACATGATGCAAGAGACGCTGAACCAGTCAAAGGTCAAACTGGACTTACTTTCGATGGAAAACAAAGATAAAGAGTTGAATAAGGATGCTCAAAAGACAGGAAGCTTGCCAAGATCACCTGTCGATGACAAAGATGAGAGTCTGCTGGCTGCACAGAAAGCAAAGAATCGTATGAGCACCCAGCTTTTTGCTGATGATGGAACGGTCCGGAGCAAAGGAATTGCCAGGCGCCCAACATTTAGGCGTGAAAAGCAGTTCGAAGACGTTGCCGTGGAGATTTCCATTGATGATGTCCCTGTTGTAGAAAATAACGAGAAGGTTGAGAAAGAGGCAGAACTAGAACGAAAAACAGAGGCTAAGGAAGAAGAAAGTATAGAACTGCCTAAGGAGAAAAAGAGCCAATCAGAAGAGGCGGAGAAAGAAGCAAAGCAAGAAGCAAAGCAAGAAGCGAAGCAAGAAGCGAAGCAAGAAGCAAAGCAAGAAGCAAAACAAGAGAAAGAAGATGATAAAAAATCTGGGAAGGCAGAAGATCATTCCGAAGCAAAGAAAAAGGAAGAGTTTGTGACAGACTCTGGTAAATTAGAAGCATCAGCAAAACTTCATAAACCAAAGTTGGAACAAAGTAACCCTCGAGCGGGAAGTCTTTCTTTAAAACCAAACAAAATGTCACTAGAAGTGGGGAAAAAGCCAAGGCCTTTGAGTGACCTTTCGTTTCTAGAAATAGATCGCGCGACATCTAAAGAATTGATACATTTGAACAAGGGAAGAGCTAAACCGAAGGGTAGGCGCCCCCCTTCTAAAGCAGCTGATTTGTCCCATCTGACGGCCAATGAGGAGGAGATCGATGTTGATGAAACGCCGAAGGAGGAAAATAGAGAGGAGACGACGCCGAATTCGAAGAAAGAAGAAAAAGGCTTGAGAACGCCTCCAAAGCCCAGGCCGAAGTCAATGCAGCCTCTGGAATCGCCGAGCACGGAAAAAGAAATGGGTGTCATACGAACTGGCTCGATTCCTCACAAATCATCGGAAGCTTTGAAGGCAAAATTGAAATTAGAAGAGGAAGATCCTAAAGTTGATCTGACTTCAAAGCCAGATATAACATCTCCGCCAAGACCAGAGCCTCCTAAGAAGGAAGGTTCCGTGAAGAAGAAACCTAAGCTGCCAATGGGGGTCCCCTTGCCTGGATTCCCAAATATTCTTGGAAAACCCAGCTTGCCTAAGAAGGACAGGTCCCCATCGCTTAAAAAGGATGAACAAAATGAAGGAAGCCAGATACATAACTCAGAGGATGAAACTTCTATGAAAACTGAAGATAGTAACGTTGATACATTGAAGTTGGATGACAATATTGGGAGCGAATCCAGTCCGCAGGCGGAGGCAGAAAAAGAGAAGACGCCTGAGGTTGCGGAGAAACCAAAGCCAAAGAAATTTAAGCCGCCTGGGGGTGTGCCAATGGGGTTTGGTGGGGCATTGATGGCAGAAATGAAGAAAAAGCGGGGTATAAAAGACAAGGAGCCTGAAACTCCCGATAAACATGCTACTGAAGAAAAGCCTGCCACTGAGAATAAACCTCCTGCTGTGACGTCACCACCTACCGCAGCGAAGCCAACACCGGCCGCTAGGAAGCCGCCTCCTCCAGCGAGGCTTTCAGCAGAGAAAAGAAGGTCCTTGATTCTTGAAGCAGGAGCCAAACCAATTATCACAGATAAACCTGATGGGCCTGTAATCGAGGAGAAAAAAGAGGCCGACGCGGCGGAGGAGAAACTAACAGCAACTGAAGGCGAAGGAGGATCGGCAGAAAAACATGGCGATGGCACATCTGAGGAAGCAGAAAACCAAGGCAACAAGGAAACTACTGAAGAGACTGTGAAAGAGAAAAATATTTCAGAATAA

Transcript

rna-XM_065208893.1

aaaaaacaattggaGAAGGAAGTGTCCAAGGCAAGCTGAAGAGGGAAATCTTAATCATCTCGGAAGGTTCCCGCACTGATTGAATTTAGTGCACGggaatgcaaataaaagactTCAAATAAAACATGGAGCAAAGCAAAGGAGAGCAAACTTTACTTAGTGAAGTTCAAAAGGCAATTCCCCAAAGATCAGGAAATGtcacattttttaagaaagttgGTCTTGAAAAAGGAGGCAGTAGATTTTTGGTAATATCTACAAACAGGGTTTTTATACTCTCTACAAAGACACCATTCAAGGCTGAAACAAGCTTTCATTTGCTTGAAATCAAATCAGTGGAAAGTTCAAAACCATGCATGCTGCAGTTCAAGGTGGTCCATGAAAAACCGGTGTCAGTTGCTATAGCAACAGAAAGTGAAGATGATATCCAGTTTATTGTCGCTCAGATTATTGCATTGCTGCGTCACAACTTTCCTGGCTCAAGCATAGGCAATGAATTGAAGTTAAAAATCGAGCCTTCAgagaaacttgaaaatatcacaaaacTTGCTGTTGCACTTGCTAGTCCGGCATCTGATACTGATATGGGACCATGTGGTGGATTTTCGTTATCATACTCGTCGATTTGCGATCTGCATGGAGCAAAACCGATGGCTGAGGTCATTTGGGATGTGGATAAAATCTACGGAAGTCATGGATGTAAAAACTTCAACATATCTGATTTCGACCATTTAGAAGTAAAGGAACTGATTCCTATTCTCGAAACTTTCGAATACAACAACTGGTTTCAAGGCCTTTCCTGTCGATCCTACAAATTAAGCAACGAGCTGGTAGATGGTTTGGCCAAAGTCTTCAAATCTAACACTTCGATTGAAGAACTTGACCTTTACGAGTGTCGGCTATCGAAaGAAAATGTGCAGAAATTGTCACAAGCTGTTACATCGAATCCGAAGACAGGgcttaaaagaataaatttggGAAAGAATACAATAGATGATAGGGGCGCATCTTCGTTTTGTGCTGTTTTGTCAGCACTACAGCATGGTTTTGAGTCACTTCTCATCAAGGATGTTGGAATAACTGGCAAAGgAGTGTCGTTGATATTCTCAGCCATCAAAGGAAATCACCACATGACATCATCGCTAACATGCCTGAATCTATCCTCCAACCCATTAAAAGCTGATGGCACCTCGGCAGTCTGTGAGTTTCTTGCAAAGGCCAATGTCCTTCAAGAGCTTCATTTGTCCAATTCGGAATGTTCTCTGGAGCTGGTATTCGGAGCATTGGCTAGGGGATGTCTTCAGCATTTGAAGATTGTAAATTTAGCAGGGAATCCTCCTTCGTATAGAAAATCTAAAGATACTCAAATTGCACCCTCTGTTACCACGTTCTTTAGTTCAAGTATGGCCTTGGAATCTGTAAACCTTTCTCGTACGAAGATTTCTGCTGAGTTCACCAAAGCAATTCTAATCGGCTTGATTTCCAACACTGGTCTTACAGATGTTTCCTTAAATCTATCTGGCAATGAGTTACGATCGGCTGGAGCAGCAGAAATAAGTAGCTGCATTGACAGTGTCAAGAATCTTGTTCAGCTGGAACTCGATGATAATGGTTTGGACATGGACCTTATTGCCATCTGCCATAGTGTAAAAAAGAGCACCTCCCTTAAACGCCTTAGTCTGTCACAAAACATCGGAAAATCCAAgaatatCAATGTACCTGAAATTCTGGAAAGCATTGTTGAAATGATCATCATGGAGTCCTTGCCATTGACCTCACTTTCAATCGCTGACAATCGGCTGAGACAAGATGCGTACGTGATAATCGATGCACTAGGCACCAATGGTCTTTTAGAAGAACTTGACATAAGCGGAAATTTTATTGGTGATGAAGGAGCAAGACTTCTAGCCAAAGCATTGCAAATAAACACCAAGTTAAAGAAGATAAGCCTTGATCGAAATGGGATCACTCTTAAAGGATACAGCAGTATTGCCATGTCAATCGAAAGGAATTATACACTGCAGTTAATTCCAACCCCGTTCGGGGACCTACTGCCCCTGACGAAAAATAATGGACAAGCCGTAACTAAATGTTTTACGAAAATCGATGAGCTACTGCTTCGAAATCAGTCGATTGAAGTTGGTGAGAAGGATCCTTCTGTCAAATTAAAGCAAAACCTACTGCTAAGCTCGCTAGATCAAGAGAGCACCGACTATTTATTGGTTAAAGTCCAGGACGCCATTGCTGAGCTGAATGGGTTAGAAAATGACGAAACCATTGCAAAAGAGGTGGAAGCTGGAAAGGAAGCGATTAAAGATGCTGACAAAATGAAGCAGATGTTGTTCAAGCTCTTTGTGGACCTGGGAAACCCTTCGAAAAAGATTGAAGAGAAAGCTGATGAAATGTTAAAAGAAGTCACTGGTTTTGCAAATGACCTAGTCAAGGAGAATGTATCTGGTACGCTTGCACACGTGAAAGAACAATGTTCTTCAATTGCATCTAACGAGGAAACGCTGAAAGAGCTTGAAGCATTGGTTTCATCCGAAGGCAAAGTTGATAGTCTTGGACTGAGAGAGACCATAACACGAACTATGGTGGGccttatttcaaataaagtgAATGATGCAACCCTTCGCGTTGCTTCTGCTCTTGGTGAAAGCCTCACAAACATGATGCAAGAGACGCTGAACCAGTCAAAGGTCAAACTGGACTTACTTTCGAtggaaaacaaagataaagagTTGAATAAGGATGCTCAAAAGACAGGAAGCTTGCCAAGATCACCTGTCGATGACAAAGATGAGAGTCTGCTGGCTGCACAGAAAGCAAAGAATCGTATGAGCACCCAGCTTTTTGCTGATGATGGAACGGTCCGGAGCAAAGGAATTGCCAGGCGCCCAACATTTAGGCGTGAAAAGCAGTTCGAAGACGTTGCCGTGGAGATTTCCATTGATGATGTCCCTGTTGTAGAAAATAACGAGAAGGTTGAGAAAGAGGCAGAACTAGAACGAAAAACAGAGGCTAAGGAAGAAGAAAGTATAGAACTGCCTAAGGAGAAAAAGAGCCAATCAGAAGAGGCGGAGAAAGAAGCAAAGCAAGAAGCAAAGCAAGAAGCGAAGCAAGAAGCGAAGCAAGAAGCAAAGCAAGAAGCAAAACAAGAGAAAgaagatgataaaaaatctggGAAGGCAGAAGATCATTCcgaagcaaagaaaaaggaagagtTTGTGACAGACTCTGGTAAATTAGAAGCATCAGCAAAACTTCATAAACCAAAGTTGGAACAAAGTAACCCTCGAGCGGGAAGTCTTTCtttaaaaccaaacaaaatgtCACTAGAAGTGGGGAAAAAGCCAAGGCCTTTGAGTGACCTTTCGTTTCTAGAAATagATCGCGCGACATCTAAAGAATTGATACATTTGAACAAGGGAAGAGCTAAACCGAAGGGTAGGCGCCCCCCTTCTAAAGCAGCTGATTTGTCCCATCTGACGGCCAATGAGGAGGAGATCGATGTTGATGAAACGCCGAAGGAGGAAAATAGAGAGGAGACGACGCCGAATtcgaagaaagaagaaaaaggctTGAGAACGCCTCCAAAGCCCAGGCCGAAGTCAATGCAGCCTCTGGAATCGCCGAGCACGGAAAAAGAAATGGGTGTCATACGAACTGGCTCGATTCCTCACAAATCATCGGAAGCTTTGAaggcaaaattgaaattagaaGAGGAAGATCCTAAAGTTGATCTGACTTCAAAGCCAGATATAACATCTCCGCCAAGACCAGAGCCTCCTAAGAAGGAAGGTTCCGTGAAGAAGAAACCTAAGCTGCCAATGGGGGTCCCCTTGCCTGGATTCCCAAATATTCTTGGAAAACCCAGCTTGCCTAAGAAGGACAGGTCCCCATCGCTTAAAAAGGATGAACAAAATGAAGGAAGCCAGATACATAACTCAGAGGATGAAACTTCTATGAAAACTGAAGATAGTAACGTTGATACATTGAAGTTGGATGACAATATTGGGAGCGAATCCAGTCCGCAGGCGGAGGCAGAAAAAGAGAAGACGCCTGAGGTTGCGGAGAAACCAAAGCCAAAGAAATTTAAGCCGCCTGGGGGTGTGCCAATGGGGTTTGGTGGGGCATTGATGgcagaaatgaagaaaaagcgGGGTATAAAAGACAAGGAGCCTGAAACTCCCGATAAACATGCTACTGAAGAAAAGCCTGCCACTGAGAATAAACCTCCTGCTGTGACGTCACCACCTACCGCAGCGAAGCCAACACCGGCCGCTAGGAAGCCGCCTCCTCCAGCGAGGCTTTCAGCAGAGAAAAGAAGGTCCTTGATTCTTGAAGCAGGAGCCAAACCAATTATCACAGATAAACCTGATGGGCCTGTAATCGAGGAGAAAAAAGAGGCCGACGCGGCGGAGGAGAAACTAACAGCAACTGAAGGCGAAGGAGGATCGGCAGAAAAACATGGCGATGGCACATCTGAGGAAGCAGAAAACCAAGGCAACAAGGAAACTACTGAAGAGACtgtgaaagagaaaaatatttcagAATAATAATATCGATATCGGAGAAAATGAGATGTGATGAACAAATGAATATCCAGCTGTttgaagaagagaagaaaactGTTTATGGGGACAatcaaagtatatttttatgactCGTCTTGTCTTTTGCATCATATTATACACATAAACAGGTTTATGTATATCTTTTTTGGAGATTCAGAATAATTAATATTTCGCAACTGGGAATTTTGTAAACAGATGTAGCTTTGTAAACATGCCTCGTATAATAGGTAGTAACACCTCGTCAGTTTGTTAAGATGTGGTATTTATTAATAAATGATAGacaatgtttcaaaagtgAGAGTAGGAATTGCATCAAACATTCAAAGACATTGTATCAAGAATTACTTACTTAAATTTAAGGCACAGACTTTTGTTGATAATAGGAAGTTGACTTTAAAGCGTCGATCTTTGCCAGAAATGAAGTTTTGTAACTCTGTTTAAATTTCGTATTTCCATCTCACAGAGTTTGTAGGGTAGTCATACGCATATAAAAAGTATACTTAGCATTTTAAAGCAATCTGTTTCGAgttttgtaacaaaaaatcttCGTAACTTGTAGAAATGTTTTAGATGGTCTCACGAGttgtaaatttaaagtttACCATTATGAAATATATCTGCACGTTCTTTCGTTGATCGTTGATTTAGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17888 all species →	Carm_PH	Carmil pleckstrin homology domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041245 all species →	Domain	CARMIL, pleckstrin homology domain	Interproscan
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20493	LRRC16, CARMIL; leucine-rich repeat-containing protein 16	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.